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lncRNA: ENSG00000255517

Summary for DPP3-DT

Gene summary

Gene information	Ensembl ID	ENSG00000255517
	Gene symbol	DPP3-DT
	Gene name	DPP3 divergent transcript
	HGNC	55494
	Entrez ID	101928069
	Gene type	antisense
	Synonyms	DPP3-DT\|11q13.2\|CTD-3074O7.5
	UniProtAcc

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Structure and expression level for DPP3-DT

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000255517	5.567912e-01	7.122452e-05	CHOL	2.419504e-04
ENSG00000255517	3.171594e-01	8.487958e-11	LIHC	3.271400e-10

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lncRNA-Protein interaction for DPP3-DT

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000255517	ENST00000527092	CTD-3074O7.5	ENSG00000149929	HIRIP3	11.99	92.9275	Q9BW71	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for DPP3-DT

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for DPP3-DT

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

QKI,CDC5L,SH2B3,CHST11,GOLGA3,RFX7,YLPM1,NAF1,SH3PXD2A,EIF4G3,SBNO2,SIPA1L1,SNX6,UBR1,CHD8,RAB3GAP1,PTPN11,STRN3,ADAM10,ITGB1,FCHO2,SLC17A5,POLR2A,SLAIN2,ANKFY1,CAMK2D,FNDC3A,SEC24B,ITPRIPL2,ATF7,CIC,ATP2A2,SON,ZDHHC20,MACF1,LIMA1,PRRC2C,KMT2D,RAB31,PKD2,PTPN12,APAF1,CPEB4,RNF111,TP53BP1,PCNX1,OTUD4,VCL,IQGAP1,G3BP1,GIGYF2,SEPTIN11,RNF31,CLIP1,CLCN3,SART3,PCDH1,SEC23A,NCOA2,UBE3B,ARHGAP5,RCOR1,FRYL,HSD17B4,SAMD4A,TBC1D2B,BAZ2A,GNS,PIKFYVE,SPCS3,USP9X,ARSB,MYOF,ACVR1,ZCCHC2,APOL6,PDLIM5,KIF13B,ASH1L,DYNC1LI2,CAND1,RASA1,GNPTAB,DNAJC13,CERT1,DNAJC3,STAT6,SSH1,TMEM131,RNF145,XRN1,SMG6,MED13L,EPG5,KIAA0232,IGF2R,ATP11A,TRIP12,ATP9B,ICAM1,NFAT5,KIF2A,REST,PPP4R1,CSNK1A1,CDC23,CLASP1,DYNC1H1,GON4L,AKAP13,TEP1,CALU,SEC31A,CTNNA1,ERAP1,ELF1,AFF1,UGGT1,CARM1,ANO6,LRP1,CAST,PICALM,DENND5A,BDP1,USP14,CANX,FNDC3B,DOCK1,NEMF,GLYR1,VPS13C,IBTK,NCOR1,FN1,BAZ1A,NSD1,CREB1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000255517	ENST00000525142	exon_skip_90104	chr12:10709907-10710114	-33.04	-0.2873	YBX3	ENST00000228251	In-frame
ENSG00000255517	ENST00000525142	exon_skip_494079	chr8:144099080-144099205	-25.49	-0.2256	SHARPIN	ENST00000398712	Frame-shift
ENSG00000255517	ENST00000525142	exon_skip_303345	chr19:17227839-17228005	-22.90	-0.1624	OCEL1	ENST00000215061	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for DPP3-DT

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000255517.5	ENST00000527092.4	83	262	513
ENSG00000255517.5	ENST00000602951.1	119	390	749
ENSG00000255517.5	ENST00000533502.1	53	83	244
ENSG00000255517.5	ENST00000527274.2	80	216	458
ENSG00000255517.5	ENST00000525142.1	143	300	731

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential