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lncRNA: ENSG00000253200

Summary for RP11-582J16.5

Gene summary

Gene information	Ensembl ID	ENSG00000253200
	Gene symbol	RP11-582J16.5
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-582J16.5

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for RP11-582J16.5

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000173473	SMARCC1	77.71	95.1484	Q92922	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000149311	ATM	76.25	97.0265	Q13315	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000036257	CUL3	75.35	94.9933	Q13618	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000156983	BRPF1	75.25	95.2138	P55201	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000139842	CUL4A	74.18	93.9177	Q13619	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000168137	SETD5	73.13	94.5789	Q9C0A6	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000164169	PRMT9	70.66	93.1433	Q6P2P2	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000196367	TRRAP	67.95	96.2065	Q9Y4A5	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000128908	INO80	67.87	93.3175	Q9ULG1	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000100425	BRD1	66.92	94.5924	O95696	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000024048	UBR2	65.76	92.1664	Q8IWV8	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000146247	PHIP	65.24	97.1483	Q8WWQ0	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000110851	PRDM4	63.28	91.4506	Q9UKN5	TF,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000253729	PRKDC	62.33	97.2096	P78527	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000124177	CHD6	59.16	94.361	Q8TD26	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000185658	BRWD1	57.79	96.8843	Q9NSI6	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000263001	GTF2I	57.22	95.1645	P78347	TF,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000164080	RAD54L2	56.27	95.9057	Q9Y4B4	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000101126	ADNP	56.03	93.9428	Q9H2P0	TF,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000127663	KDM4B	52.56	94.0214	O94953	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000136891	TEX10	51.05	96.2667	Q9NXF1	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000135655	USP15	48.11	95.1164	Q9Y4E8	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000101109	STK4	44.85	92.8572	Q13043	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000094631	HDAC6	42.4	92.6865	Q9UBN7	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000117625	RCOR3	35.29	93.5665	Q9P2K3	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000143033	MTF2	15.77	91.6304	Q9Y483	TF,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000096070	BRPF3	80.64	96.0123	Q9ULD4	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000064313	TAF2	76.62	95.456	Q6P1X5	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000125484	GTF3C4	71.99	93.3118	Q9UKN8	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000147162	OGT	70.56	94.5593	O15294	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000073614	KDM5A	57.74	94.7405	P29375	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000163939	PBRM1	56.92	94.6773	Q86U86	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000165288	BRWD3	56.41	95.9755	Q6RI45	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000076108	BAZ2A	53.63	93.4093	Q9UIF9	TF,RBP,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000115548	KDM3A	47.51	93.989	Q9Y4C1	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000186532	SMYD4	43.72	91.482	Q8IYR2	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000132356	PRKAA1	43.43	92.1116	Q13131	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000163104	SMARCAD1	43.12	95.1881	Q9H4L7	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000119638	NEK9	37.4	93.7704	Q8TD19	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000130024	PHF10	16.49	93.3758	Q8WUB8	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000142453	CARM1	9.67	91.0923	Q86X55	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000135801	TAF5L	5.37	92.7346	O75529	Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000119760	SUPT7L	4.02	91.858	O94864	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000168152	THAP9	85.62	94.4897	Q9H5L6	TF	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000135164	DMTF1	64.17	93.5942	Q9Y222	TF	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000110851	PRDM4	63.28	91.4039	Q9UKN5	TF,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000100426	ZBED4	59.14	93.8533	O75132	TF	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000263001	GTF2I	57.22	94.8911	P78347	TF,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000101126	ADNP	56.03	93.8041	Q9H2P0	TF,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000170581	STAT2	56.03	95.0003	P52630	TF	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000076108	BAZ2A	53.63	93.3534	Q9UIF9	TF,RBP,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000159140	SON	50.92	95.2969	P18583	TF,RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000117000	RLF	43.62	91.9635	Q13129	TF	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000101544	ADNP2	40.11	92.9	Q6IQ32	TF	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000105856	HBP1	36.07	93.0514	O60381	TF	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000213928	IRF9	24.02	92.4062	Q00978	TF	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000117036	ETV3	22.29	92.8896	P41162	TF	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000141646	SMAD4	15.77	92.6984	Q13485	TF	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000143033	MTF2	15.77	91.303	Q9Y483	TF,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000158711	ELK4	2.43	90.7232	P28324	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000213079	SCAF8	63.35	95.6307	Q9UPN6	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000125676	THOC2	62.17	96.045	Q8NI27	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000165271	NOL6	59.85	95.1957	Q9H6R4	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000129566	TEP1	58.45	96.8516	Q99973	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000136937	NCBP1	57.47	95.5736	Q09161	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000134698	AGO4	57.16	93.8724	Q9HCK5	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000114127	XRN1	55.06	96.5158	Q8IZH2	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000126070	AGO3	54.39	92.7443	Q9H9G7	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000076108	BAZ2A	53.63	93.3813	Q9UIF9	TF,RBP,Epi	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000129317	PUS7L	51.72	91.8287	Q9H0K6	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000159140	SON	50.92	95.3253	P18583	TF,RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000021776	AQR	50.81	96.2641	O60306	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000135870	RC3H1	43.01	95.3109	Q5TC82	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000123908	AGO2	43.0	93.0373	Q9UKV8	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000148840	PPRC1	41.6	95.6557	Q5VV67	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000156304	SCAF4	41.43	95.8036	O95104	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000162231	NXF1	39.87	92.3675	Q9UBU9	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000196943	NOP9	37.95	93.9115	Q86U38	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000111605	CPSF6	25.58	92.8707	Q16630	RBP	ENCODE;High-throughput data combine LncPro prediction
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000111615	KRR1	23.06	92.2561	Q13601	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000155636	RBM45	22.36	90.3222	Q8IUH3	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000149532	CPSF7	19.83	93.8898	Q8N684	RBP	NA
ENSG00000253200	ENST00000521025	RP11-582J16.5	ENSG00000155858	LSM11	14.62	93.2041	P83369	RBP	ENCODE

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lncRNA-DNA interaction for RP11-582J16.5

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-582J16.5

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

ATP5MC1,PSMB4,OST4,TTC1,COX4I1,GPX4,NDUFS8,ELOB,DDT,RNF181,UQCRQ,LAMTOR2,NDUFA13,COX8A,TMEM256,COX7C,COX6B1,DAD1,ATOX1,COX5A,COX7A2,AURKAIP1,PRDX5,HIGD2A,GSTO1,CHCHD5,CUTA,MRPS12,NDUFB10,POLR2L,MRPS15,AP2S1,TMEM219,NDUFB7,ATP6V0B,ATP5MJ,TALDO1,PRR13,PSMB6,NDUFB11,IFI27L2,CHMP2A,MRPL34,NDUFS6,VKORC1,ATP5PD,NDUFS3,BRI3,ARPC4,MRPL41,COMMD1,MTLN,NUPR1,PARK7,NDUFB1,C1orf122,COMMD9,NDUFA3,SERF2,ATP5MK,OAZ1,GPX1,ATP5ME,HCST,BLVRB

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-582J16.5

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000253200.1	ENST00000521025.1	144	433	2

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential