 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer | | ENSG00000250490 | FLJ33360 | rs2250523:6371954:A:C | 8 | PRAD,LIHC,KIRP,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs4592:6372248:G:A | 8 | PRAD,LIHC,KIRP,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs271395:6370851:G:A | 8 | PRAD,LIHC,KIRP,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs271398:6369397:C:T | 8 | PRAD,LIHC,KIRP,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs271399:6368521:C:T:- | 8 | PRAD,LIHC,KIRP,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs9313147:6377832:A:G | 0 | | 6 | PRAD,KIRP,KIRC,BLCA,BRCA,LGG | | ENSG00000250490 | FLJ33360 | rs930104:6369883:G:T | 0 | | 2 | PRAD,THCA | | ENSG00000250490 | FLJ33360 | rs930105:6369804:C:T | 0 | | 1 | PRAD | | ENSG00000250490 | FLJ33360 | rs12659137:6387151:G:T | 0 | | 3 | PRAD,THCA,BRCA | | ENSG00000250490 | FLJ33360 | rs72651085:6379179:T:C | 0 | | 3 | PRAD,THCA,BRCA | | ENSG00000250490 | FLJ33360 | rs72651087:6379214:G:C | 0 | | 3 | PRAD,THCA,BRCA | | ENSG00000250490 | FLJ33360 | rs73736846:6385070:T:G | 0 | | 3 | PRAD,THCA,BRCA | | ENSG00000250490 | FLJ33360 | rs2455146:6374004:A:G | 6 | PRAD,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs2455147:6374079:A:C | 6 | PRAD,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs2562616:6374985:T:C | 6 | PRAD,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs9451:6372585:A:G | 6 | PRAD,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs271396:6370230:T:C | 6 | PRAD,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs271397:6370215:A:G:+ | 0 | | 5 | PRAD,KIRC,THCA,BRCA,LGG | | ENSG00000250490 | FLJ33360 | rs905140:6375337:A:G | 6 | PRAD,KIRC,BLCA,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs57056522:6386437:T:TAA | 0 | | 3 | PRAD,KIRC,THCA | | ENSG00000250490 | FLJ33360 | rs4701726:6384283:A:C:- | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs4702339:6383669:C:G | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs4702340:6383710:A:C | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs4701729:6386221:G:A | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs11134158:6383318:T:C | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs35897467:6380816:T:C | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs11951949:6382153:A:G | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs4701725:6384105:A:G | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs4702344:6394495:C:T | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs13159142:6395225:G:A | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs4702341:6384152:C:G | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs4701727:6385943:T:A | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs62331791:6390756:G:A | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs11957437:6396626:C:T | 0 | | 2 | COAD,THCA | | ENSG00000250490 | FLJ33360 | rs16877258:6398877:A:G:+ | 3 | KIRC,THCA,BRCA | 0 | | | ENSG00000250490 | FLJ33360 | rs60509023:6400434:AGT:A | 0 | | 3 | KIRC,THCA,BRCA | | ENSG00000250490 | FLJ33360 | rs12653796:6405604:A:G | 0 | | 3 | KIRC,THCA,BRCA | | ENSG00000250490 | FLJ33360 | rs16877273:6406409:T:C | 0 | | 2 | KIRC,THCA | | ENSG00000250490 | FLJ33360 | rs16877262:6400181:A:G:- | 0 | | 2 | KIRC,THCA | | ENSG00000250490 | FLJ33360 | rs1393067:6402598:C:T | 0 | | 2 | KIRC,THCA | | ENSG00000250490 | FLJ33360 | rs271401:6367590:C:G | 4 | KIRC,THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs4702338:6381395:A:G | 0 | | 3 | KIRC,THCA,LGG | | ENSG00000250490 | FLJ33360 | rs6869702:6401135:G:A | 0 | | 2 | THCA,LGG | | ENSG00000250490 | FLJ33360 | rs57679685:6406730:C:A | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs1501615:6407694:A:T:- | 0 | | 2 | THCA,LGG | | ENSG00000250490 | FLJ33360 | rs4701728:6386041:A:G | 0 | | 3 | THCA,BRCA,LGG | | ENSG00000250490 | FLJ33360 | rs16877282:6415844:A:G:+ | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs10041500:6387741:C:G:+ | 3 | THCA,BRCA,LGG | 0 | | | ENSG00000250490 | FLJ33360 | rs17775764:6405678:C:T:- | 0 | | 2 | THCA,LGG | | ENSG00000250490 | FLJ33360 | rs4360006:6396902:T:C | 0 | | 3 | THCA,BRCA,LGG | | ENSG00000250490 | FLJ33360 | rs17831845:6373100:G:A | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs2134121:6410753:T:C | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs56400224:6370055:G:A | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs12153614:6378312:C:T | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs55776321:6375053:G:A | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs12189308:6392602:A:G:+ | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs13163053:6395345:G:C | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs4702343:6392979:G:C | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs72716096:6404973:A:C | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs72716090:6396760:G:A | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs11744626:6393448:C:T:+ | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs2047717:6382595:G:C | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs2047718:6382969:T:C | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs56403520:6383474:G:A | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs67014838:6383559:C:G | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs12189163:6386569:G:A | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs113302436:6417990:G:A | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs143664249:6418186:CA:C | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs998222:6390651:A:G:- | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs17831958:6377293:C:T | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs12153555:6378094:C:G | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs17627775:6368634:A:C | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs67357954:6371040:G:A | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs66741909:6371457:G:C | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs17775195:6371680:G:C | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs17545306:6366977:C:T:+ | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs72716075:6365915:C:G | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs10073360:6393298:A:C | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs12654055:6410448:T:C | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs13359562:6388700:G:T | 0 | | 1 | THCA | | ENSG00000250490 | FLJ33360 | rs140297915:6389343:CA:C | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs72716094:6398280:C:T | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs72716091:6396939:G:A | 1 | THCA | 0 | | | ENSG00000250490 | FLJ33360 | rs271415:6352932:A:G:- | 0 | | 1 | LGG |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000250490.1 | ENST00000507444.1 | 132 | 813 | 415 | | ENSG00000250490.1 | ENST00000502644.1 | 162 | 1 | 489 |
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