 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000248508 | ENST00000559012 | exon_skip_13601 | chr1:164820071-164820184 | -12.77 | -0.1359 | PBX1 | ENST00000420696 | Frame-shift | | ENSG00000248508 | ENST00000559012 | exon_skip_82144 | chr12:50087362-50087485 | -15.40 | -0.1510 | SMARCD1 | ENST00000394963 | In-frame | | ENSG00000248508 | ENST00000559012 | exon_skip_482144 | chr8:22539468-22539498 | -8.81 | -0.5506 | PPP3CC | ENST00000240139 | In-frame | | ENSG00000248508 | ENST00000559012 | exon_skip_424741 | chr4:83458345-83458429 | -8.56 | -0.1173 | MRPS18C | ENST00000295491 | In-frame | | ENSG00000248508 | ENST00000559012 | exon_skip_27065 | chr1:52906518-52906611 | -12.76 | -0.2163 | ECHDC2 | ENST00000371522 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000248508 | ENST00000559012 | exon_skip_111863 | chr14:23565815-23565892 | -15.03 | -0.2783 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000248508 | ENST00000559012 | exon_skip_343146 | chr2:127057472-127057601 | -17.62 | -0.1546 | BIN1 | ENST00000316724 | In-frame | | ENSG00000248508 | ENST00000559012 | exon_skip_494079 | chr8:144099080-144099205 | -20.57 | -0.1922 | SHARPIN | ENST00000398712 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40041009-40041121 | 244.00 | -96.13 | 113 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40041428-40041546 | 242.00 | -103.78 | 117 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40039871-40039985 | 220.00 | -102.13 | 116 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40040809-40040929 | 216.00 | -100.66 | 118 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40040493-40040611 | 215.00 | -106.48 | 114 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40040370-40040484 | 213.00 | -97.28 | 117 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40040131-40040245 | 206.00 | -98.03 | 115 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40039712-40039815 | 196.00 | -95.48 | 109 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40039565-40039667 | 183.00 | -90.89 | 100 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40039312-40039417 | 181.00 | -102.40 | 107 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40040248-40040352 | 181.00 | -95.39 | 111 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40039993-40040094 | 171.00 | -83.92 | 109 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40039416-40039527 | 169.00 | -89.66 | 110 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40040618-40040726 | 163.00 | -105.88 | 109 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40041168-40041284 | 157.00 | -99.42 | 118 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000504245 | chr15:40041302-40041411 | 156.00 | -103.46 | 114 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000560341 | chr15:40039773-40039875 | 232.00 | -97.01 | 100 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000560341 | chr15:40039579-40039710 | 192.00 | -99.97 | 126 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000560341 | chr15:40039350-40039459 | 179.00 | -97.52 | 111 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000560341 | chr15:40039477-40039588 | 150.00 | -87.12 | 115 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000559012 | chr15:40064915-40065029 | 220.00 | -102.13 | 116 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000559012 | chr15:40064431-40064562 | 204.00 | -90.89 | 122 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000559012 | chr15:40064756-40064859 | 196.00 | -95.48 | 109 | NA | | ENSG00000248508 | hsa-mir-222 | ENST00000559012 | chr15:40064609-40064711 | 183.00 | -90.89 | 100 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40040592-40040711 | 223.00 | -109.90 | 119 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40040479-40040591 | 216.00 | -101.70 | 114 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40040251-40040357 | 194.00 | -92.69 | 88 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40040951-40041056 | 190.00 | -93.82 | 111 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40039945-40040054 | 187.00 | -86.24 | 109 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40040733-40040848 | 183.00 | -87.46 | 116 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40039491-40039608 | 177.00 | -84.79 | 116 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40039708-40039823 | 176.00 | -94.70 | 110 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40041363-40041468 | 173.00 | -106.74 | 108 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40039312-40039391 | 158.00 | -91.24 | 85 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40040350-40040458 | 155.00 | -85.12 | 112 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40041226-40041342 | 155.00 | -89.26 | 115 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40040064-40040182 | 149.00 | -77.55 | 116 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40039831-40039948 | 145.00 | -89.60 | 114 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000504245 | chr15:40041088-40041201 | 143.00 | -90.84 | 119 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000560341 | chr15:40039576-40039698 | 184.00 | -94.52 | 114 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000560341 | chr15:40039715-40039835 | 183.00 | -95.47 | 120 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000560341 | chr15:40039423-40039542 | 166.00 | -87.40 | 120 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000559012 | chr15:40064479-40064584 | 196.00 | -82.34 | 109 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000559012 | chr15:40064388-40064468 | 178.00 | -74.14 | 72 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000559012 | chr15:40064752-40064867 | 176.00 | -94.70 | 110 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000559012 | chr15:40064614-40064730 | 171.00 | -90.75 | 116 | NA | | ENSG00000248508 | hsa-mir-766 | ENST00000559012 | chr15:40064923-40065049 | 154.00 | -108.94 | 126 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000248508 | SRP14-DT,hsa-mir-222,MARCHF8 | KICH,TGCT,THCA,LGG,GBM | | ENSG00000248508 | SRP14-DT,hsa-mir-222,ZBTB5 | KICH,THCA,LGG,GBM,KIRP | | ENSG00000248508 | SRP14-DT,hsa-mir-222,XPNPEP3 | TGCT,THCA,LGG,GBM,KIRP | | ENSG00000248508 | SRP14-DT,hsa-mir-222,DHTKD1 | KICH,TGCT,THCA,LGG,GBM | | ENSG00000248508 | SRP14-DT,hsa-mir-222,SHLD2 | KICH,THCA,LGG,GBM,KIRP |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000248508.5 | ENST00000504245.4 | 160 | 3797 | 3315 | | ENSG00000248508.5 | ENST00000560341.2 | 127 | 690 | 1073 | | ENSG00000248508.5 | ENST00000559012.1 | 78 | 240 | 476 |
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