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lncRNA: ENSG00000238123

Summary for MID1IP1-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000238123
	Gene symbol	MID1IP1-AS1
	Gene name	MID1IP1 antisense RNA 1
	HGNC	40932
	Entrez ID
	Gene type	antisense
	Synonyms	Xp11.4\|MID1IP1-AS1
	UniProtAcc

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Structure and expression level for MID1IP1-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000238123	3.387553e-01	1.165425e-03	KICH	1.570791e-03

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lncRNA-Protein interaction for MID1IP1-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000009954	BAZ1B	35.12	91.6523	Q9UIG0	Epi	NA
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000181555	SETD2	29.43	91.7489	Q9BYW2	Epi	NA
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000086758	HUWE1	26.85	92.883	Q7Z6Z7	Epi	NA
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000171988	JMJD1C	24.06	93.6072	Q15652	Epi	NA
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000164190	NIPBL	23.69	94.0263	Q6KC79	Epi	ChIP-seq
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000139618	BRCA2	19.01	92.4788	P51587	Epi	NA
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000165632	TAF3	32.56	91.4569	Q5VWG9	Epi	ChIP-seq
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000253729	PRKDC	28.44	92.5096	P78527	Epi	NA
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000147130	ZMYM3	24.22	91.6102	Q14202	Epi	NA
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000139613	SMARCC2	22.19	92.6896	Q8TAQ2	Epi	ChIP-seq
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000156650	KAT6B	11.99	94.2239	Q8WYB5	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000238123	ENST00000436893	MID1IP1-AS1	ENSG00000167232	ZNF91	20.5	90.7688	Q05481	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for MID1IP1-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for MID1IP1-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SLC66A2,RPL37A,COA3,DDT,RNF181,NDUFA13,LAMTOR2,CTDNEP1,PEX14,NUTF2,FTL,CHMP4A,AURKAIP1,RFXANK,MRPL40,ATP5PO,PLEKHO1,VPS28,PET100,NAA38,ZNF593,ANAPC11,PTOV1,SCNM1,RPS19BP1,ARPC4,EDF1,FAM50A,RUVBL2,AUP1,SERF2,TMEM160,MBD3,MRPL27,TFPT,UBL5,SDHAF2,PHPT1,ISY1,RAB4B,THAP3,RPL35,KRTCAP2,GPX4,SNRPD2,FAM174C,ATP5MC2,MICOS13,SLIRP,NDUFA11,RPL36,SCAND1,COX6B1,PFDN5,MZT2A,TMEM208,ISOC2,SIVA1,MRPL55,FKBP8,CHCHD5,DGUOK,ROMO1,RHOG,RPS17,UBXN1,RPS11,BAD,METRNL,PFN1,PMF1,NELFE,PPP4C,COPS9,GADD45GIP1,TNFRSF4,CCDC124,GTF3C6,NFKBIE,R3HDM4,DPM3,RNF25,PSMC5,MPST,RFNG,RPS8,TMEM222,MRPL28,COA8,MCRIP1,ELOB,ZFAND2B,EIF6,CSNK2B,HSPBP1,GUK1,GSTO1,TRIR,MZT2B,JOSD2,SURF2,AP2S1,ATP5MJ,NDUFAF8,RPP21,VKORC1,NUDT14,PFDN2,NDUFS3,SPAG7,PIH1D1,NOSIP,SNRPC,EVA1B,CIAO2B,NAA10,AIP,UBE2J2,STX8,DGCR6L,TRPT1,PGLS,NT5C,SSNA1,ATP5MC1,TRAPPC1,POLR2I,MRPL52,RHOC,NDUFS8,PQBP1,NFKBIL1,MIF,GMFG,SNRPA,ATP5F1D,PSMB1,C19orf53,ATP5IF1,UBA52,YIF1B,EIF3K,LSM7,MRPS15,ARL2,TMEM219,PSMB6,DUSP23,IFI27L2,METTL26,RANGRF,FDX2,MTLN,CD63,HCFC1R1,NDUFB8,NDUFA3,PRMT1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000238123	ENST00000436893	exon_skip_356108	chr20:34740362-34743341	-37.33	-0.1061	NCOA6	ENST00000359003,ENST00000374796	In-frame
ENSG00000238123	ENST00000436893	exon_skip_358606	chr20:63202286-63203807	-39.19	-0.1107	YTHDF1	ENST00000370339	In-frame

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for MID1IP1-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000238123.1	ENST00000436893.1	77	459	692

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential