 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CNOT1,LRP6,PARG,EPB41L5,ERC1,NEK4,CMTM4,PRKAR2A,L2HGDH,NFAT5,KIF2A,PLS1,CSDE1,EXOC7,SOS2,KTN1,USP9X,MAGI1,RNF123,HACD3,CHP1,HUWE1,LONP2,TAF1,ZMYND11,SERINC5,NAF1,DYNC1LI2,KBTBD4,TOM1L1,DCAF17,USP32,GNL3L,FOXJ3,KIDINS220,NPTN,ATRN,AKAP1,EIF4G1,HECTD1,RAI1,BPTF,DDB1,NCOA2,PBX1,ARHGAP5,DDX3X,RAB11A,PUM1,ALDH7A1,NR2C2,TJP2,ZNF91,BCL2L2,RNF38,SYNJ1,NDUFS1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000237181 | ENST00000429872 | exon_skip_75398 | chr11:72692752-72692785 | -12.49 | -0.4461 | ARAP1 | ENST00000393605 | In-frame | | ENSG00000237181 | ENST00000429872 | exon_skip_515330 | chrX:65524563-65524614 | -10.48 | -0.5516 | LAS1L | ENST00000374811 | In-frame | | ENSG00000237181 | ENST00000429872 | exon_skip_368285 | chr22:29329711-29329720 | -5.39 | -0.6737 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000237181 | ENST00000429872 | exon_skip_60345 | chr11:63903985-63904147 | -21.02 | -0.1314 | MARK2 | ENST00000402010 | In-frame | | ENSG00000237181 | ENST00000429872 | exon_skip_95025 | chr12:79805591-79805768 | -16.91 | -0.1217 | PPP1R12A | ENST00000261207,ENST00000450142 | In-frame | | ENSG00000237181 | ENST00000429872 | exon_skip_482403 | chr8:27445793-27445919 | -15.67 | -0.1328 | PTK2B | ENST00000346049,ENST00000397501 | In-frame | | ENSG00000237181 | ENST00000429872 | exon_skip_2091 | chr1:17634547-17634562 | -5.91 | -2.9550 | ARHGEF10L | ENST00000361221 | In-frame | | ENSG00000237181 | ENST00000429872 | exon_skip_353131 | chr20:58669290-58669453 | -25.71 | -0.1850 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000237181 | ENST00000429872 | exon_skip_379903 | chr3:184180644-184180650 | -2.01 | -0.4020 | AP2M1 | ENST00000292807 | In-frame | | ENSG00000237181 | ENST00000429872 | exon_skip_44853 | chr10:104010815-104010908 | -10.24 | -0.1766 | SLK | ENST00000369755 | In-frame | | ENSG00000237181 | ENST00000429872 | exon_skip_461111 | chr6:90544551-90544632 | -13.37 | -0.1938 | MAP3K7 | ENST00000369329 | In-frame | | ENSG00000237181 | ENST00000429872 | exon_skip_64939 | chr11:112230207-112230230 | -6.33 | -2.1100 | PTS | ENST00000280362 | Frame-shift | | ENSG00000237181 | ENST00000429872 | exon_skip_334374 | chr2:227347225-227347384 | -20.83 | -0.1811 | MFF | ENST00000353339 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000237181 | ENST00000429872 | RAI1 | ENSG00000108557 | ENST00000353383 | -0.1026 | 1 | - | GBM | | ENSG00000237181 | ENST00000429872 | RAI1 | ENSG00000108557 | ENST00000583166 | -0.2689 | 30 | - | GBM | | ENSG00000237181 | ENST00000429872 | TJP2 | ENSG00000119139 | ENST00000377259 | -0.1295 | 1 | - | GBM | | ENSG00000237181 | ENST00000429872 | ZMYND11 | ENSG00000015171 | ENST00000509513 | -0.1278 | 101 | - | GBM | | ENSG00000237181 | ENST00000429872 | ZMYND11 | ENSG00000015171 | ENST00000602682 | -0.2380 | 34 | - | GBM | | ENSG00000237181 | ENST00000429872 | ZMYND11 | ENSG00000015171 | ENST00000558098 | -0.1278 | 101 | - | GBM | | ENSG00000237181 | ENST00000429872 | RNF123 | ENSG00000164068 | ENST00000327697 | -0.1140 | 448 | - | GBM | | ENSG00000237181 | ENST00000429872 | RNF123 | ENSG00000164068 | ENST00000432042 | -0.2402 | 83 | - | GBM | | ENSG00000237181 | ENST00000429872 | RNF123 | ENSG00000164068 | ENST00000443204 | -0.1379 | 298 | - | GBM | | ENSG00000237181 | ENST00000429872 | RNF123 | ENSG00000164068 | ENST00000433785 | -0.1338 | 1 | - | GBM | | ENSG00000237181 | ENST00000429872 | CMTM4 | ENSG00000183723 | ENST00000561680 | -0.1595 | 198 | - | GBM,KIRC,KIRP | | ENSG00000237181 | ENST00000429872 | CMTM4 | ENSG00000183723 | ENST00000563952 | -0.1051 | 229 | - | GBM,KIRC,KIRP | | ENSG00000237181 | ENST00000429872 | NDUFS1 | ENSG00000023228 | ENST00000449699 | -0.2111 | 53 | - | KIRC | | ENSG00000237181 | ENST00000429872 | NDUFS1 | ENSG00000023228 | ENST00000432169 | -0.2111 | 53 | - | KIRC | | ENSG00000237181 | ENST00000429872 | EPB41L5 | ENSG00000115109 | ENST00000331393 | -0.1085 | 82 | - | KIRC | | ENSG00000237181 | ENST00000429872 | KIF2A | ENSG00000068796 | ENST00000401507 | -0.1183 | 455 | - | GBM | | ENSG00000237181 | ENST00000429872 | KIF2A | ENSG00000068796 | ENST00000407818 | -0.1689 | 318 | - | GBM | | ENSG00000237181 | ENST00000429872 | KIF2A | ENSG00000068796 | ENST00000506857 | -0.1396 | 281 | - | GBM | | ENSG00000237181 | ENST00000429872 | ATRN | ENSG00000088812 | ENST00000446916 | -0.1576 | 33 | - | GBM | | ENSG00000237181 | ENST00000429872 | USP32 | ENSG00000170832 | ENST00000300896 | -0.1058 | 132 | - | GBM | | ENSG00000237181 | ENST00000429872 | USP32 | ENSG00000170832 | ENST00000592339 | -0.1316 | 496 | - | GBM | | ENSG00000237181 | ENST00000429872 | USP32 | ENSG00000170832 | ENST00000593071 | -0.1316 | 502 | - | GBM | | ENSG00000237181 | ENST00000429872 | USP32 | ENSG00000170832 | ENST00000589552 | -0.1020 | 446 | - | GBM | | ENSG00000237181 | ENST00000429872 | USP32 | ENSG00000170832 | ENST00000590297 | -0.1025 | 304 | - | GBM | | ENSG00000237181 | ENST00000429872 | L2HGDH | ENSG00000087299 | ENST00000261699 | -1.5200 | 441 | LUSC | KIRC,KIRP | | ENSG00000237181 | ENST00000429872 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.3260 | 13 | LUSC | KIRC,KIRP | | ENSG00000237181 | ENST00000429872 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1077 | 255 | LUSC | KIRC,KIRP | | ENSG00000237181 | ENST00000429872 | HECTD1 | ENSG00000092148 | ENST00000554471 | -0.1423 | 243 | - | GBM | | ENSG00000237181 | ENST00000429872 | BCL2L2 | ENSG00000129473 | ENST00000556599 | -0.4239 | 3 | - | GBM | | ENSG00000237181 | ENST00000429872 | MAGI1 | ENSG00000151276 | ENST00000460329 | -0.1169 | 1 | - | GBM | | ENSG00000237181 | ENST00000429872 | MAGI1 | ENSG00000151276 | ENST00000497477 | -0.1766 | 100 | - | GBM | | ENSG00000237181 | ENST00000429872 | HACD3 | ENSG00000074696 | ENST00000565299 | -0.1657 | 76 | - | KIRC,KIRP |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000237181.1 | ENST00000429872.1 | 121 | 179 | 544 |
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