lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer | ENSG00000235295 | FLJ41941 | rs9605498:18512094:C:T:+ | 0 | | 3 | PRAD,HNSC,BRCA | ENSG00000235295 | FLJ41941 | rs77499168:18511682:G:GA | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs55763408:18510936:C:T | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs56168430:18510974:T:A | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs56041799:18510989:A:T | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs56072380:18511085:T:C | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs60004776:18511135:G:A | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs9604824:18511506:C:A | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs73151102:18511546:G:C | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs60053588:18511625:G:A | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs61237280:18511648:C:T | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs9605499:18512109:C:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs372779827:18508600:CAGTA:C | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs4819658:18509086:A:T | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs4819659:18509095:C:T | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs11297598:18509625:CT:C | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs9605500:18512325:C:T:- | 0 | | 3 | PRAD,HNSC,BRCA | ENSG00000235295 | FLJ41941 | rs9604823:18510145:G:T | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs2401499:18501543:C:T | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs4819655:18505487:G:A | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs58725145:18504654:A:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs60948583:18504677:C:T | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs57620626:18504693:G:A | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs4566454:18502110:T:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs55749522:18510634:A:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs55985934:18510675:T:C | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs55704597:18510791:T:C | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs4819478:18507575:T:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs147151577:18507729:GTGAAAT:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs4819479:18507849:G:A | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs73151097:18508802:T:A | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs9604822:18506773:T:C | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs2034298:18505068:G:A | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs9605495:18503477:T:C | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs2401498:18501480:T:C | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs72613684:18504152:T:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs67016185:18504191:A:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs9605496:18504315:A:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs2034297:18505062:G:A | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs2034299:18505121:A:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs4819657:18505703:A:G | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs199778545:18502789:C:CAGGAT | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs8137526:18503211:C:T | 0 | | 2 | PRAD,HNSC | ENSG00000235295 | FLJ41941 | rs28606652:18500390:C:T | 0 | | 3 | PRAD,HNSC,BRCA | ENSG00000235295 | FLJ41941 | rs56718526:18498155:G:T | 0 | | 3 | PRAD,HNSC,BRCA | ENSG00000235295 | FLJ41941 | rs458480:18539370:A:G:- | 3 | LUAD,LUSC,BRCA | 0 | | ENSG00000235295 | FLJ41941 | rs4819661:18518829:A:G:+ | 2 | HNSC,BRCA | 0 | | ENSG00000235295 | FLJ41941 | rs4819660:18518634:C:T:- | 0 | | 2 | HNSC,BRCA | ENSG00000235295 | FLJ41941 | rs9605502:18517918:G:A | 0 | | 1 | HNSC | ENSG00000235295 | FLJ41941 | rs407977:18512758:T:G | 0 | | 1 | HNSC | ENSG00000235295 | FLJ41941 | rs8142200:18496522:C:T:+ | 2 | HNSC,BRCA | 0 | | ENSG00000235295 | FLJ41941 | rs9605494:18500678:G:A | 0 | | 2 | HNSC,BRCA | ENSG00000235295 | FLJ41941 | rs9306204:18498685:A:G | 0 | | 2 | HNSC,BRCA | ENSG00000235295 | FLJ41941 | rs55877126:18500357:AT:A | 0 | | 2 | HNSC,BRCA | ENSG00000235295 | FLJ41941 | rs67803064:18500031:G:A | 0 | | 2 | HNSC,BRCA | ENSG00000235295 | FLJ41941 | rs7284666:18499307:C:G:+ | 0 | | 1 | BRCA |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000235295.1 | ENST00000443243.1 | 98 | 2479 | 2183 |
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