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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000235295

Summary for LINC01634

check button Gene summary

Gene informationEnsembl ID

ENSG00000235295

Gene symbol

LINC01634

Gene namelong intergenic non-protein coding RNA 1634
HGNC

52421

Entrez ID

100192420

Gene typelincRNA
SynonymsFLJ41941|22q11.21|LINC01634
UniProtAcc

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Structure and expression level for LINC01634

check buttonDifferentially expressed gene analysis between cancer and normal samples.
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value

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lncRNA-Protein interaction for LINC01634

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for LINC01634

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LINC01634

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for LINC01634

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer
ENSG00000235295FLJ41941rs9605498:18512094:C:T:+03PRAD,HNSC,BRCA
ENSG00000235295FLJ41941rs77499168:18511682:G:GA02PRAD,HNSC
ENSG00000235295FLJ41941rs55763408:18510936:C:T02PRAD,HNSC
ENSG00000235295FLJ41941rs56168430:18510974:T:A02PRAD,HNSC
ENSG00000235295FLJ41941rs56041799:18510989:A:T02PRAD,HNSC
ENSG00000235295FLJ41941rs56072380:18511085:T:C02PRAD,HNSC
ENSG00000235295FLJ41941rs60004776:18511135:G:A02PRAD,HNSC
ENSG00000235295FLJ41941rs9604824:18511506:C:A02PRAD,HNSC
ENSG00000235295FLJ41941rs73151102:18511546:G:C02PRAD,HNSC
ENSG00000235295FLJ41941rs60053588:18511625:G:A02PRAD,HNSC
ENSG00000235295FLJ41941rs61237280:18511648:C:T02PRAD,HNSC
ENSG00000235295FLJ41941rs9605499:18512109:C:G02PRAD,HNSC
ENSG00000235295FLJ41941rs372779827:18508600:CAGTA:C02PRAD,HNSC
ENSG00000235295FLJ41941rs4819658:18509086:A:T02PRAD,HNSC
ENSG00000235295FLJ41941rs4819659:18509095:C:T02PRAD,HNSC
ENSG00000235295FLJ41941rs11297598:18509625:CT:C02PRAD,HNSC
ENSG00000235295FLJ41941rs9605500:18512325:C:T:-03PRAD,HNSC,BRCA
ENSG00000235295FLJ41941rs9604823:18510145:G:T02PRAD,HNSC
ENSG00000235295FLJ41941rs2401499:18501543:C:T02PRAD,HNSC
ENSG00000235295FLJ41941rs4819655:18505487:G:A02PRAD,HNSC
ENSG00000235295FLJ41941rs58725145:18504654:A:G02PRAD,HNSC
ENSG00000235295FLJ41941rs60948583:18504677:C:T02PRAD,HNSC
ENSG00000235295FLJ41941rs57620626:18504693:G:A02PRAD,HNSC
ENSG00000235295FLJ41941rs4566454:18502110:T:G02PRAD,HNSC
ENSG00000235295FLJ41941rs55749522:18510634:A:G02PRAD,HNSC
ENSG00000235295FLJ41941rs55985934:18510675:T:C02PRAD,HNSC
ENSG00000235295FLJ41941rs55704597:18510791:T:C02PRAD,HNSC
ENSG00000235295FLJ41941rs4819478:18507575:T:G02PRAD,HNSC
ENSG00000235295FLJ41941rs147151577:18507729:GTGAAAT:G02PRAD,HNSC
ENSG00000235295FLJ41941rs4819479:18507849:G:A02PRAD,HNSC
ENSG00000235295FLJ41941rs73151097:18508802:T:A02PRAD,HNSC
ENSG00000235295FLJ41941rs9604822:18506773:T:C02PRAD,HNSC
ENSG00000235295FLJ41941rs2034298:18505068:G:A02PRAD,HNSC
ENSG00000235295FLJ41941rs9605495:18503477:T:C02PRAD,HNSC
ENSG00000235295FLJ41941rs2401498:18501480:T:C02PRAD,HNSC
ENSG00000235295FLJ41941rs72613684:18504152:T:G02PRAD,HNSC
ENSG00000235295FLJ41941rs67016185:18504191:A:G02PRAD,HNSC
ENSG00000235295FLJ41941rs9605496:18504315:A:G02PRAD,HNSC
ENSG00000235295FLJ41941rs2034297:18505062:G:A02PRAD,HNSC
ENSG00000235295FLJ41941rs2034299:18505121:A:G02PRAD,HNSC
ENSG00000235295FLJ41941rs4819657:18505703:A:G02PRAD,HNSC
ENSG00000235295FLJ41941rs199778545:18502789:C:CAGGAT02PRAD,HNSC
ENSG00000235295FLJ41941rs8137526:18503211:C:T02PRAD,HNSC
ENSG00000235295FLJ41941rs28606652:18500390:C:T03PRAD,HNSC,BRCA
ENSG00000235295FLJ41941rs56718526:18498155:G:T03PRAD,HNSC,BRCA
ENSG00000235295FLJ41941rs458480:18539370:A:G:-3LUAD,LUSC,BRCA0
ENSG00000235295FLJ41941rs4819661:18518829:A:G:+2HNSC,BRCA0
ENSG00000235295FLJ41941rs4819660:18518634:C:T:-02HNSC,BRCA
ENSG00000235295FLJ41941rs9605502:18517918:G:A01HNSC
ENSG00000235295FLJ41941rs407977:18512758:T:G01HNSC
ENSG00000235295FLJ41941rs8142200:18496522:C:T:+2HNSC,BRCA0
ENSG00000235295FLJ41941rs9605494:18500678:G:A02HNSC,BRCA
ENSG00000235295FLJ41941rs9306204:18498685:A:G02HNSC,BRCA
ENSG00000235295FLJ41941rs55877126:18500357:AT:A02HNSC,BRCA
ENSG00000235295FLJ41941rs67803064:18500031:G:A02HNSC,BRCA
ENSG00000235295FLJ41941rs7284666:18499307:C:G:+01BRCA

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000235295.1ENST00000443243.19824792183