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lncRNA: ENSG00000233230

Summary for AC079807.2

Gene summary

Gene information	Ensembl ID	ENSG00000233230
	Gene symbol	AC079807.2
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for AC079807.2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000233230	3.238331e-01	3.000238e-02	CHOL	3.150063e-02
ENSG00000233230	-4.759687e-01	2.426160e-06	KICH	6.110891e-06
ENSG00000233230	-3.221331e-01	3.926559e-15	THCA	6.503363e-14

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lncRNA-Protein interaction for AC079807.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000173473	SMARCC1	81.42	92.6614	Q92922	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000067369	TP53BP1	76.17	92.2525	Q12888	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000128908	INO80	73.03	94.0574	Q9ULG1	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000168137	SETD5	68.99	95.2201	Q9C0A6	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000146247	PHIP	68.01	94.6645	Q8WWQ0	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000156983	BRPF1	67.41	91.0739	P55201	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000118058	KMT2A	62.55	95.5071	Q03164	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000141867	BRD4	62.38	94.2941	O60885	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000197724	PHF2	61.94	94.292	O75151	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000119778	ATAD2B	61.19	91.357	Q9ULI0	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000171316	CHD7	60.79	94.1794	Q9P2D1	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000181090	EHMT1	59.93	91.4442	Q9H9B1	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000085224	ATRX	58.1	94.6738	P46100	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000185658	BRWD1	57.45	95.1037	Q9NSI6	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000101040	ZMYND8	54.87	92.8548	Q9ULU4	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000116731	PRDM2	54.13	93.9621	Q13029	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000124177	CHD6	53.36	93.1637	Q8TD26	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000141027	NCOR1	53.27	95.7157	O75376	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000147130	ZMYM3	51.66	90.5204	Q14202	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000187605	TET3	51.21	94.9366	O43151	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000036549	ZZZ3	50.64	90.2196	Q8IYH5	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000147133	TAF1	50.21	93.9372	P21675	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000173575	CHD2	48.97	93.4	O14647	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000104885	DOT1L	48.66	92.7451	Q8TEK3	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000131149	GSE1	47.91	94.6078	Q14687	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000171634	BPTF	46.69	93.5318	Q12830	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000140396	NCOA2	43.98	92.7113	Q15596	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000134852	CLOCK	43.2	90.9416	O15516	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000087206	UIMC1	42.13	94.2453	Q96RL1	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000198646	NCOA6	39.76	94.7434	Q14686	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000163935	SFMBT1	37.58	90.3957	Q9UHJ3	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000163635	ATXN7	35.33	91.7465	O15265	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000272333	KMT2B	34.79	94.3599	Q9UMN6	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000049618	ARID1B	29.05	93.8947	Q8NFD5	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000156650	KAT6B	25.63	94.5175	Q8WYB5	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000123636	BAZ2B	79.89	93.8967	Q9UIF8	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000112983	BRD8	79.52	91.0103	Q9H0E9	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000025293	PHF20	77.46	93.8245	Q9BVI0	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000155827	RNF20	71.84	91.5575	Q5VTR2	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000172943	PHF8	69.35	92.8827	Q9UPP1	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000032219	ARID4A	68.69	94.1266	P29374	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000048649	RSF1	67.88	95.6938	Q96T23	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000054267	ARID4B	67.08	94.6261	Q4LE39	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000009954	BAZ1B	65.84	95.7994	Q9UIG0	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000100888	CHD8	63.65	95.7044	Q9HCK8	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000181555	SETD2	62.57	96.1308	Q9BYW2	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000005483	KMT2E	61.18	95.8488	Q8IZD2	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000165671	NSD1	60.77	96.2041	Q96L73	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000170004	CHD3	59.71	94.656	Q12873	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000114933	INO80D	59.5	92.5941	Q53TQ3	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000108557	RAI1	58.96	95.4355	Q7Z5J4	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000163939	PBRM1	58.31	90.8453	Q86U86	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000165288	BRWD3	57.38	94.32	Q6RI45	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000005339	CREBBP	56.62	96.1168	Q92793	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000177200	CHD9	56.53	95.1558	Q3L8U1	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000100393	EP300	56.21	95.9578	Q09472	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000073614	KDM5A	55.47	91.5612	P29375	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000169375	SIN3A	55.39	91.69	Q96ST3	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000129292	PHF20L1	55.31	94.7094	A8MW92	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000116539	ASH1L	53.76	94.0546	Q9NR48	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000103549	RNF40	53.75	92.4513	O75150	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000109118	PHF12	53.68	91.4532	Q96QT6	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000164190	NIPBL	50.94	94.9964	Q6KC79	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000171988	JMJD1C	50.18	91.9888	Q15652	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000084676	NCOA1	50.09	94.2259	Q15788	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000078403	MLLT10	49.45	92.4429	P55197	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000143970	ASXL2	48.95	93.4032	Q76L83	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000204406	MBD5	46.69	92.083	Q9P267	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000168769	TET2	46.59	95.1124	Q6N021	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000055483	USP36	43.87	91.4125	Q9P275	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000137337	MDC1	41.84	95.0636	Q14676	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000183495	EP400	40.89	96.3624	Q96L91	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000126012	KDM5C	37.47	90.3949	P41229	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000102974	CTCF	36.15	91.7467	P49711	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000124151	NCOA3	32.72	95.0777	Q9Y6Q9	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000120071	KANSL1	29.58	93.129	Q7Z3B3	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000135999	EPC2	22.89	90.9934	Q52LR7	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000141582	CBX4	12.42	92.0351	O00257	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000127483	HP1BP3	11.9	90.8275	Q5SSJ5	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000131263	RLIM	11.33	91.8358	Q9NVW2	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000135801	TAF5L	4.84	90.1572	O75529	Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000163961	RNF168	2.37	92.4659	Q8IYW5	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000123636	BAZ2B	79.89	94.1174	Q9UIF8	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000025293	PHF20	77.46	94.0086	Q9BVI0	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000144747	TMF1	69.63	91.5079	P82094	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000102908	NFAT5	68.59	92.8756	O94916	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000118058	KMT2A	62.55	95.6935	Q03164	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000135164	DMTF1	61.26	91.0401	Q9Y222	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000130254	SAFB2	60.6	95.4692	Q14151	TF,RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000100207	TCF20	57.87	95.5695	Q9UGU0	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000130940	CASZ1	56.28	94.2857	Q86V15	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000181827	RFX7	55.73	93.8717	Q2KHR2	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000105127	AKAP8	54.34	94.0417	O43823	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000116731	PRDM2	54.13	93.0405	Q13029	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000116539	ASH1L	53.76	94.0611	Q9NR48	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000196867	ZFP28	52.24	90.527	Q8NHY6	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000187605	TET3	51.21	95.1674	O43151	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000036549	ZZZ3	50.64	90.2308	Q8IYH5	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000084676	NCOA1	50.09	94.618	Q15788	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000011451	WIZ	50.01	93.0178	O95785	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000104885	DOT1L	48.66	93.3756	Q8TEK3	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000198300	PEG3	48.28	94.7466	Q9GZU2	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000147124	ZNF41	48.15	92.4753	P51814	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000171634	BPTF	46.69	93.8493	Q12830	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000168769	TET2	46.59	95.4389	Q6N021	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000070476	ZXDC	44.94	92.3952	Q2QGD7	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000084093	REST	44.72	90.4204	Q13127	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000140396	NCOA2	43.98	93.339	Q15596	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000167232	ZNF91	43.3	94.1213	Q05481	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000134852	CLOCK	43.2	91.3406	O15516	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000169554	ZEB2	42.36	92.7745	O60315	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000189079	ARID2	42.32	90.2797	Q68CP9	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000198521	ZNF43	40.96	92.0984	P17038	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000126464	PRR12	38.93	94.8774	Q9ULL5	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000196670	ZFP62	37.79	93.9789	Q8NB50	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000102974	CTCF	36.15	92.1408	P49711	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000125812	GZF1	34.82	93.4313	Q9H116	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000272333	KMT2B	34.79	95.2881	Q9UMN6	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000170448	NFXL1	33.79	92.9094	Q6ZNB6	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000140836	ZFHX3	33.6	95.3973	Q15911	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000147789	ZNF7	33.36	92.131	P17097	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000114439	BBX	33.04	93.3462	Q8WY36	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000198040	ZNF84	32.73	93.163	P51523	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000124151	NCOA3	32.72	95.2926	Q9Y6Q9	TF,Epi	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000124459	ZNF45	32.66	93.7102	Q02386	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000146587	RBAK	32.27	91.3994	Q9NYW8	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000164631	ZNF12	23.25	90.213	P17014	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000186272	ZNF17	22.55	92.9127	P17021	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000126705	AHDC1	21.94	93.0744	Q5TGY3	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000118689	FOXO3	18.27	91.4168	O43524	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000105708	ZNF14	17.45	92.2852	P17017	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000065970	FOXJ2	13.11	91.182	Q9P0K8	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000184939	ZFP90	12.94	90.9887	Q8TF47	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000197857	ZNF44	12.61	91.0664	P15621	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000168661	ZNF30	12.52	90.4951	P17039	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000187792	ZNF70	12.09	91.4157	Q9UC06	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000095574	IKZF5	10.28	91.4851	Q9H5V7	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000180787	ZFP3	10.04	91.5702	Q96NJ6	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000196378	ZNF34	6.68	92.2298	Q8IZ26	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000278129	ZNF8	5.2	91.6655	P17098	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000187815	ZFP69	5.14	91.4051	Q49AA0	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000186660	ZFP91	3.56	92.2339	Q96JP5	TF	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000198939	ZFP2	0.96	91.1655	Q6ZN57	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000130254	SAFB2	60.6	94.0736	Q14151	TF,RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000004534	RBM6	59.79	90.0639	P78332	RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000213079	SCAF8	57.37	94.6239	Q9UPN6	RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000198000	NOL8	54.88	92.4393	Q76FK4	RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000106344	RBM28	53.0	90.7209	Q9NW13	RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000137776	SLTM	52.19	93.9407	Q9NWH9	RBP	ENCODE
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000135870	RC3H1	37.08	90.5476	Q5TC82	RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000156304	SCAF4	32.02	93.51	O95104	RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000129351	ILF3	28.47	93.2545	Q12906	RBP	ENCODE
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000133226	SRRM1	23.74	94.6423	Q8IYB3	RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000167978	SRRM2	17.65	95.1372	Q9UQ35	RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000124193	SRSF6	16.51	90.7705	Q13247	RBP	NA
ENSG00000233230	ENST00000417692	AC079807.2	ENSG00000100461	RBM23	7.11	90.5179	Q86U06	RBP	NA

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lncRNA-DNA interaction for AC079807.2

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for AC079807.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

UQCR11,SH3BGRL3,GPX4,FAM174C,MRPL47,UQCRQ,COX7C,TMEM208,GSTO1,MRPL54,RHOG,COPE,ATP5F1E,NDUFB7,COX6A1,CTSB,BRI3,EDF1,CD63,FKBP2,NDUFA1,GPX1,NCLN,TRIAP1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000233230	ENST00000417692	exon_skip_500548	chr9:131494404-131494486	-10.83	-0.1388	PRRC2B	ENST00000357304	Frame-shift
ENSG00000233230	ENST00000417692	exon_skip_326009	chr2:64581189-64581273	-11.39	-0.1931	AFTPH	ENST00000238855,ENST00000409933	In-frame

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for AC079807.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000233230.1	ENST00000432064.1	76	115	345
ENSG00000233230.1	ENST00000439870.1	92	277	2
ENSG00000233230.1	ENST00000417692.1	80	7	249

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential