 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,RBM19,NCOA2,ILF3,GLI4,PBX2,RBM39,ZBTB4,IRF3,CIRBP,DDX56,MZF1,MYSM1,NRF1,AKAP8,ZNF2,KAT7,ARID2,ZXDC,SUGP2,DMTF1,ZNF70,BAZ2A,ZNF24,RBM28,ATF6B,TBP,DDX55,KMT2B,STAT2,TET3,NR6A1,ZFP14,RNPC3,ZFP69,SAFB2,THOC1,ZNF25,MNT,CNOT4,SON,ZBED5,CENPT,TTC14,CREB1,RC3H1,SUGP1,ZNF44,ZNF91,SRSF4,RBMX,AGO2,RBM4B,TIGD6,RBM26,CPSF1,RBM14,PURB,ZBTB3,MYEF2,MBD1,IKZF4,PUS7L,ASH1L,MEIS1,DHX34,NFIA,CPSF4,RBM15,SP4,CPSF7,THOC2,CXXC1,ZNF34,THAP6,PATZ1,DDX17,MOV10,SRRM2,RFX7,PRR12,MECP2,PHF1,PURA,ZC3H8,RBM41,HSF4,NOL9,DZIP3,ZFP62,SGSM2,CELF1,SCMH1,ELK4,TIGD1,RBM45,PRDM2,RBM10,DDX51,E2F4,MBD4,AGO3,FOXP1,SRSF2,MBD6,ZGPAT,FIZ1,PBX4,ZMAT1,ZNF83,ZNF3,RFX3,NXF1,ZNF8,ZNF18,NR2C2,STAT6,DDX11,PUS10,RBM6,HMGN3,ZNF14,RFX1,RBM48,GMEB2,NOL3,ZFHX3,XPO1,RBM5,ELF2,SMAD4,ZNF43,ZFP28,ZNF17,SRCAP,DOT1L,ZNF84,DDX42,BAZ2B,RXRB,TRA2A,AHDC1,KMT2A,ZNF69,SRSF7,HINFP,NR2C1,ZFP3,TEP1,SFPQ,TET2,RBM33,NOL8,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000229180 | ENST00000625310 | exon_skip_111863 | chr14:23565815-23565892 | -15.05 | -0.2315 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_114365 | chr14:74290026-74290118 | -13.03 | -0.1515 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_370518 | chr22:50247691-50247776 | -12.76 | -0.1636 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_66482 | chr11:126274926-126275021 | -15.65 | -0.1841 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_74009 | chr11:64773429-64773505 | -10.49 | -0.1665 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_319223 | chr19:43526200-43526349 | -18.21 | -0.1282 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_374375 | chr3:49675182-49675309 | -17.41 | -0.1527 | APEH | ENST00000296456 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_382458 | chr3:38131595-38131638 | -10.99 | -0.7850 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_499390 | chr9:127808557-127808705 | -22.28 | -0.1921 | FPGS | ENST00000373247 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_111870 | chr14:23566561-23566686 | -15.06 | -0.2215 | AP1G2 | ENST00000397120 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_290158 | chr17:42953723-42953778 | -9.06 | -0.3124 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_300663 | chr19:1425877-1425960 | -14.22 | -0.3307 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_326885 | chr2:74490024-74490127 | -14.73 | -0.1519 | TTC31 | ENST00000233623 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_370525 | chr22:50250426-50250523 | -16.29 | -0.2011 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_431827 | chr4:109696409-109696486 | -8.00 | -0.1176 | CASP6 | ENST00000265164 | Frame-shift | | ENSG00000229180 | ENST00000449307 | exon_skip_442657 | chr5:74730259-74730398 | -15.88 | -0.1176 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000229180 | ENST00000449307 | exon_skip_470226 | chr7:103307595-103307708 | -16.18 | -0.1602 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000229180 | ENST00000625310 | exon_skip_511212 | chrX:71555189-71555385 | -22.04 | -0.1344 | OGT | ENST00000373719 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | | ENSG00000229180 | ENSG00000004534 | RBM6 | exon_skip_114365 | ENSG00000119688:chr14:74290026-74290118 | ABCD4 | ENST00000356924 | Frame-shift | STAD,READ,OV,PAAD,THCA | | ENSG00000229180 | ENSG00000004534 | RBM6 | exon_skip_370518 | ENSG00000100429:chr22:50247691-50247776 | HDAC10 | ENST00000216271 | Frame-shift | SARC,UVM,READ,PRAD,PAAD | | ENSG00000229180 | ENSG00000004534 | RBM6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,READ,OV,UCS,PAAD,THCA |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000229180.5 | ENST00000449307.3 | 50 | 141 | 293 | | ENSG00000229180.5 | ENST00000625310.1 | 168 | 2233 | 2739 |
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