lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer | ENSG00000226711 | FAM66C | rs34311045:8323135:G:T | 4 | PRAD,LUSC,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs12370428:8323079:A:G | 4 | PRAD,LUSC,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs12372630:8352832:C:T | 4 | PRAD,LUAD,THYM,KIRC | 0 | | ENSG00000226711 | FAM66C | rs7965442:8328874:A:G | 6 | PRAD,THYM,LUSC,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4883077:8324525:G:T | 5 | PRAD,LUSC,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs11043742:8326256:G:A | 5 | PRAD,THYM,PCPG,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs11043743:8326260:A:G | 5 | PRAD,THYM,PCPG,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs35217701:8324340:AT:A | 5 | PRAD,THYM,LUSC,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs79298385:8353649:AAC:A | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840979:8355288:T:C | 3 | PRAD,THYM,KIRC | 0 | | ENSG00000226711 | FAM66C | rs71042344:8352550:GT:G | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs7485891:8355729:A:G | 4 | PRAD,THYM,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4523766:8326567:C:T | 5 | PRAD,THYM,LUSC,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs7306155:8354423:C:T | 3 | PRAD,THYM,KIRC | 0 | | ENSG00000226711 | FAM66C | rs58712432:8349970:C:T | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4278579:8356121:G:C | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs71042341:8327469:AT:A | 5 | PRAD,THYM,LUSC,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs11830311:8351064:A:C | 6 | PRAD,LUAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840918:8323921:T:C | 5 | PRAD,THYM,LUSC,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs7968628:8329240:A:C | 5 | PRAD,THYM,LUSC,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10743253:8329700:A:C | 5 | PRAD,THYM,LUSC,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840977:8354653:C:T | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs12369280:8325018:C:T | 6 | PRAD,LUAD,THYM,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs59495395:8325443:G:C | 6 | PRAD,LUAD,THYM,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs10770298:8330796:A:G:- | 5 | PRAD,THYM,LUSC,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4242879:8326009:C:T | 5 | PRAD,THYM,LUSC,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840921:8324613:A:G | 7 | PRAD,LUAD,THYM,LUSC,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs7350621:8343188:C:T | 6 | PRAD,LUAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs34787357:8325462:A:G | 6 | PRAD,LUAD,THYM,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs4242878:8325660:A:G | 6 | PRAD,LUAD,THYM,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs10770308:8347358:A:G | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs6486894:8354135:G:A | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10770317:8354987:G:A | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840924:8326425:C:T | 6 | PRAD,LUAD,THYM,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs4604963:8355856:G:A | 6 | PRAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840926:8327369:A:G | 6 | PRAD,LUAD,THYM,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs4453311:8327676:G:A | 6 | PRAD,LUAD,THYM,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs11043962:8355254:T:C | 6 | PRAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840962:8346608:A:G:- | 0 | | 6 | PRAD,LUAD,THYM,KIRC,THCA,BRCA | ENSG00000226711 | FAM66C | rs12368250:8348230:A:G | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs11613962:8324717:A:G | 5 | PRAD,THYM,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs61922211:8331906:C:T | 4 | PRAD,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs4291750:8346866:C:T | 6 | PRAD,LUAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs6486877:8331234:A:G | 6 | PRAD,THYM,LUSC,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs7304320:8331317:C:T | 6 | PRAD,THYM,LUSC,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10770295:8329574:C:T | 5 | PRAD,THYM,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs10743252:8329676:C:T | 5 | PRAD,THYM,LUSC,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs10770297:8330484:A:C | 6 | PRAD,THYM,LUSC,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4883080:8348768:T:C | 6 | PRAD,LUAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4533110:8345964:G:T | 6 | PRAD,LUAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840980:8355328:G:A | 6 | PRAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840981:8355351:A:G | 6 | PRAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs7350570:8342863:T:G | 6 | PRAD,LUAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs11043862:8342703:C:T | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs11043860:8342492:T:C | 6 | PRAD,LUAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs11043934:8352902:G:T | 6 | PRAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4548691:8358550:G:A | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10841001:8358053:G:A | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4463910:8346867:A:G | 7 | PRAD,LUAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840953:8342309:G:A | 5 | PRAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs7970875:8345518:A:G | 6 | PRAD,LUAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10770309:8347958:G:C | 6 | PRAD,LUAD,THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4883079:8345075:G:T | 7 | PRAD,LUAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840950:8340554:G:A | 7 | PRAD,LUAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs7138926:8339586:A:G | 3 | PRAD,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs11043800:8336212:T:C | 5 | PRAD,LUAD,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10770306:8339778:T:C | 7 | PRAD,LUAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10770342:8357956:C:G | 7 | PRAD,LUAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs11043808:8336594:G:A | 3 | PRAD,KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs12311395:8357507:C:T:- | 0 | | 6 | PRAD,THYM,KIRP,KIRC,THCA,BRCA | ENSG00000226711 | FAM66C | rs4604965:8308297:A:G | 2 | PRAD,KIRC | 0 | | ENSG00000226711 | FAM66C | rs7977447:8361035:C:T | 3 | PRAD,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs7968858:8356908:T:C | 6 | PRAD,THYM,KIRP,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4883086:8372757:A:C:+ | 2 | PRAD,KIRC | 0 | | ENSG00000226711 | FAM66C | rs10840818:8305976:G:T | 0 | | 3 | LUAD,KIRC,BRCA | ENSG00000226711 | FAM66C | rs10840834:8306476:C:T | 0 | | 3 | LUAD,KIRC,BRCA | ENSG00000226711 | FAM66C | rs7294887:8306590:G:T | 0 | | 3 | LUAD,KIRC,BRCA | ENSG00000226711 | FAM66C | rs7296152:8306829:C:T | 0 | | 2 | LUAD,KIRC | ENSG00000226711 | FAM66C | rs4589367:8305588:T:A | 0 | | 3 | LUAD,KIRC,BRCA | ENSG00000226711 | FAM66C | rs7296176:8306902:C:T | 0 | | 2 | LUAD,KIRC | ENSG00000226711 | FAM66C | rs4297540:8307004:G:A | 0 | | 2 | LUAD,KIRC | ENSG00000226711 | FAM66C | rs34534786:8305368:TG:T | 0 | | 2 | LUAD,KIRC | ENSG00000226711 | FAM66C | rs61922216:8337305:G:C | 3 | THYM,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs10840927:8327516:G:T | 4 | THYM,PCPG,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs7397859:8359304:C:T | 4 | THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs4627150:8343961:C:T:- | 4 | THYM,KIRC,THCA,BRCA | 0 | | ENSG00000226711 | FAM66C | rs12426297:8334366:C:T | 0 | | 3 | THYM,KIRC,THCA | ENSG00000226711 | FAM66C | rs11043930:8352702:A:G | 1 | THYM | 0 | | ENSG00000226711 | FAM66C | rs4334105:8332691:C:A | 3 | PCPG,KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs11043734:8324663:G:A | 2 | KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs71451946:8338420:A:AC | 2 | KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs4619218:8333260:C:G | 2 | KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs4523762:8335159:A:C | 2 | KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs10840914:8321045:G:C | 2 | KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs7976346:8330732:T:C | 2 | KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs10743248:8320262:T:C | 1 | KIRC | 0 | | ENSG00000226711 | FAM66C | rs10840913:8320842:A:G | 2 | KIRC,THCA | 0 | | ENSG00000226711 | FAM66C | rs11519179:8303978:T:A | 0 | | 2 | KIRC,BRCA | ENSG00000226711 | FAM66C | rs10840851:8308145:C:G | 0 | | 2 | KIRC,BRCA | ENSG00000226711 | FAM66C | rs10840849:8307968:C:T:- | 0 | | 2 | KIRC,BRCA | ENSG00000226711 | FAM66C | rs10840850:8308025:T:C | 0 | | 2 | KIRC,BRCA | ENSG00000226711 | FAM66C | rs6486847:8309235:A:G | 1 | KIRC | 0 | | ENSG00000226711 | FAM66C | rs6486903:8368213:C:G:+ | 2 | KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840833:8306414:A:G | 0 | | 2 | KIRC,BRCA | ENSG00000226711 | FAM66C | rs11043622:8305249:C:T | 0 | | 2 | KIRC,BRCA | ENSG00000226711 | FAM66C | rs4293193:8307358:A:G:+ | 2 | KIRC,BRCA | 0 | | ENSG00000226711 | FAM66C | rs10840853:8308449:T:G | 0 | | 2 | KIRC,BRCA | ENSG00000226711 | FAM66C | rs7963107:8310035:A:G | 0 | | 1 | KIRC | ENSG00000226711 | FAM66C | rs4414303:8335227:G:A | 2 | THCA,BRCA | 0 | |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000226711.5 | ENST00000456135.5 | 83 | 550 | 801 | ENSG00000226711.5 | ENST00000454799.5 | 139 | 618 | 199 | ENSG00000226711.5 | ENST00000544214.4 | 132 | 597 | 199 | ENSG00000226711.5 | ENST00000541558.4 | 166 | 686 | 186 | ENSG00000226711.5 | ENST00000372173.5 | 211 | 1573 | 938 | ENSG00000226711.5 | ENST00000535567.4 | 83 | 339 | 590 | ENSG00000226711.5 | ENST00000420514.5 | 72 | 559 | 341 | ENSG00000226711.5 | ENST00000438689.5 | 109 | 163 | 492 | ENSG00000226711.5 | ENST00000540566.1 | 88 | 238 | 501 |
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