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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000221953

Summary for LINC02897

check button Gene summary

Gene informationEnsembl ID

ENSG00000221953

Gene symbol

LINC02897

Gene namelong intergenic non-protein coding RNA 2897
HGNC

33759

Entrez ID

388759

Gene typelincRNA
SynonymsLINC02897|01q44|C1orf229
UniProtAcc

Q6ZS94


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Structure and expression level for LINC02897

check buttonDifferentially expressed gene analysis between cancer and normal samples.
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value

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lncRNA-Protein interaction for LINC02897

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for LINC02897

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LINC02897

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for LINC02897

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer
ENSG00000221953C1orf229rs3844080:247306833:A:G:+02THCA,LGG
ENSG00000221953C1orf229rs7531763:247308791:C:T02THCA,LGG
ENSG00000221953C1orf229rs5782416:247312106:CA:C02THCA,LGG
ENSG00000221953C1orf229rs76170357:247279057:G:C01THCA
ENSG00000221953C1orf229rs113027410:247286851:T:C01THCA
ENSG00000221953C1orf229rs10754537:247325417:T:G02THCA,LGG
ENSG00000221953C1orf229rs4105113:247300179:T:G02THCA,LGG
ENSG00000221953C1orf229rs12141126:247322001:A:G02THCA,LGG
ENSG00000221953C1orf229rs10924919:247272298:C:T:+02THCA,LGG
ENSG00000221953C1orf229rs3736325:247264862:C:G02THCA,LGG
ENSG00000221953C1orf229rs6675536:247322298:A:C:-2THCA,LGG0
ENSG00000221953C1orf229rs10924912:247263433:T:C02THCA,LGG
ENSG00000221953C1orf229rs74152933:247278860:C:T01THCA
ENSG00000221953C1orf229rs10802468:247263032:C:T02THCA,LGG
ENSG00000221953C1orf229rs74152930:247274215:G:T01THCA
ENSG00000221953C1orf229rs6662594:247273737:T:C02THCA,LGG
ENSG00000221953C1orf229rs10924915:247266664:G:A02THCA,LGG
ENSG00000221953C1orf229rs67344627:247317419:GAC:G02THCA,LGG
ENSG00000221953C1orf229rs78271330:247250265:A:G01THCA
ENSG00000221953C1orf229rs113025099:247250634:T:G01THCA
ENSG00000221953C1orf229rs75450345:247249390:A:G01THCA
ENSG00000221953C1orf229rs79228664:247249789:G:C01THCA
ENSG00000221953C1orf229rs76515716:247249824:A:G01THCA
ENSG00000221953C1orf229rs79886904:247249827:T:G01THCA
ENSG00000221953C1orf229rs113780752:247250167:A:G01THCA
ENSG00000221953C1orf229rs144599167:247309031:A:G01THCA
ENSG00000221953C1orf229rs372750416:247314776:G:A01THCA
ENSG00000221953C1orf229rs111776436:247259433:G:GC01THCA
ENSG00000221953C1orf229rs79805001:247326975:C:T01THCA
ENSG00000221953C1orf229rs75162140:247316632:T:C01THCA
ENSG00000221953C1orf229rs34256812:247271740:A:AG02THCA,LGG
ENSG00000221953C1orf229rs77835659:247249303:A:G01THCA
ENSG00000221953C1orf229rs77497399:247260172:G:C01THCA
ENSG00000221953C1orf229rs41311575:247261614:G:A01THCA
ENSG00000221953C1orf229rs77701886:247248765:T:C01THCA
ENSG00000221953C1orf229rs114141468:247271441:T:C01THCA
ENSG00000221953C1orf229rs78281580:247277832:C:G01THCA
ENSG00000221953C1orf229rs114743654:247277833:C:G01THCA
ENSG00000221953C1orf229rs79920190:247301870:C:T01THCA
ENSG00000221953C1orf229rs60176339:247278125:A:T01THCA
ENSG00000221953C1orf229rs201911076:247262718:C:CA01THCA
ENSG00000221953C1orf229rs111605640:247249933:G:A01THCA
ENSG00000221953C1orf229rs59992604:247251422:T:C01THCA
ENSG00000221953C1orf229rs115135865:247272412:G:T01THCA
ENSG00000221953C1orf229rs115110916:247270051:C:T01THCA
ENSG00000221953C1orf229rs113360157:247273872:C:T01THCA
ENSG00000221953C1orf229rs75493280:247277350:C:A01THCA
ENSG00000221953C1orf229rs141557009:247275218:C:G01THCA
ENSG00000221953C1orf229rs79991382:247277728:A:G01THCA
ENSG00000221953C1orf229rs12130774:247250095:T:C01THCA
ENSG00000221953C1orf229rs12134244:247250103:A:G01THCA
ENSG00000221953C1orf229rs12088411:247272528:G:T01THCA
ENSG00000221953C1orf229rs9793102:247323260:G:T:-02THCA,LGG
ENSG00000221953C1orf229rs10493861:247306917:T:C02THCA,LGG
ENSG00000221953C1orf229rs3844079:247307353:C:T02THCA,LGG
ENSG00000221953C1orf229rs7521596:247308691:T:C02THCA,LGG
ENSG00000221953C1orf229rs6426218:247259571:A:G:+02THCA,LGG
ENSG00000221953C1orf229rs6659254:247302314:G:C02THCA,LGG
ENSG00000221953C1orf229rs35531017:247307268:CAG:C02THCA,LGG
ENSG00000221953C1orf229rs7549674:247259858:A:T02THCA,LGG
ENSG00000221953C1orf229rs12130663:247288954:C:G01THCA
ENSG00000221953C1orf229rs2890104:247253583:A:G:+2THCA,LGG0
ENSG00000221953C1orf229rs113679040:247277233:A:G01THCA
ENSG00000221953C1orf229rs77426740:247253731:T:C02THCA,LGG
ENSG00000221953C1orf229rs1552988:247255942:T:C02THCA,LGG
ENSG00000221953C1orf229rs6681227:247250100:A:G01LGG
ENSG00000221953C1orf229rs6702419:247251135:C:T01LGG
ENSG00000221953C1orf229rs12084753:247252200:A:G01LGG
ENSG00000221953C1orf229rs12133763:247252683:T:C01LGG
ENSG00000221953C1orf229rs35511369:247253192:C:T01LGG
ENSG00000221953C1orf229rs12144733:247252836:C:T01LGG
ENSG00000221953C1orf229rs35314391:247253074:G:A01LGG
ENSG00000221953C1orf229rs3892246:247254538:C:T01LGG
ENSG00000221953C1orf229rs35452630:247253414:C:A01LGG
ENSG00000221953C1orf229rs2890106:247257833:T:G01LGG
ENSG00000221953C1orf229rs2890101:247253475:C:T01LGG
ENSG00000221953C1orf229rs2890102:247253485:A:G01LGG
ENSG00000221953C1orf229rs2379193:247253493:T:C01LGG
ENSG00000221953C1orf229rs57003817:247253899:C:T01LGG
ENSG00000221953C1orf229rs60293371:247253903:T:C01LGG
ENSG00000221953C1orf229rs60677310:247253910:A:C01LGG
ENSG00000221953C1orf229rs6669242:247251482:A:G:+01LGG
ENSG00000221953C1orf229rs2890103:247253566:A:G01LGG
ENSG00000221953C1orf229rs2890105:247253685:C:T01LGG
ENSG00000221953C1orf229rs60794525:247253730:A:ACGGCCTCACACATGGGTGG01LGG
ENSG00000221953C1orf229rs34350972:247254050:G:C01LGG
ENSG00000221953C1orf229rs2379192:247253338:T:G01LGG
ENSG00000221953C1orf229rs10924907:247243908:G:T01LGG
ENSG00000221953C1orf229rs10924914:247266656:C:G01LGG
ENSG00000221953C1orf229rs12748331:247252121:A:C01LGG
ENSG00000221953C1orf229rs4925692:247267274:C:A01LGG
ENSG00000221953C1orf229rs142667695:247257077:CAAA:C01LGG
ENSG00000221953C1orf229rs13376442:247256818:C:T01LGG
ENSG00000221953C1orf229rs12691533:247257327:A:T01LGG
ENSG00000221953C1orf229rs112075536:247300809:A:G01LGG
ENSG00000221953C1orf229rs12093759:247305873:C:T01LGG
ENSG00000221953C1orf229rs10924927:247303263:G:A01LGG
ENSG00000221953C1orf229rs10802471:247307061:G:A01LGG
ENSG00000221953C1orf229rs12076222:247300760:A:G01LGG
ENSG00000221953C1orf229rs41305955:247241850:G:C01LGG
ENSG00000221953C1orf229rs10465619:247301467:T:C01LGG
ENSG00000221953C1orf229rs10924928:247303895:G:C01LGG
ENSG00000221953C1orf229rs6659256:247259699:G:A01LGG
ENSG00000221953C1orf229rs5782414:247315607:CA:C01LGG
ENSG00000221953C1orf229rs10465609:247302446:C:T01LGG
ENSG00000221953C1orf229rs12138686:247271918:G:A01LGG
ENSG00000221953C1orf229rs12136286:247194242:G:A01LGG
ENSG00000221953C1orf229rs12121335:247194244:C:T01LGG
ENSG00000221953C1orf229rs2642960:247203693:C:T:-01LGG
ENSG00000221953C1orf229rs57498207:247227819:C:T01LGG
ENSG00000221953C1orf229rs12751386:247199758:C:G01LGG
ENSG00000221953C1orf229rs34870081:247196761:C:T01LGG
ENSG00000221953C1orf229rs12141826:247200639:A:G:-01LGG
ENSG00000221953C1orf229rs2818880:247201852:T:C01LGG
ENSG00000221953C1orf229rs12119918:247262843:C:G01LGG
ENSG00000221953C1orf229rs10802469:247263044:T:C01LGG
ENSG00000221953C1orf229rs7412787:247245529:A:G01LGG
ENSG00000221953C1orf229rs10802463:247232808:A:G01LGG
ENSG00000221953C1orf229rs12129591:247230223:A:T01LGG
ENSG00000221953C1orf229rs6662592:247273727:T:A01LGG
ENSG00000221953C1orf229rs2055190:247245356:T:A01LGG
ENSG00000221953C1orf229rs6685921:247225668:T:G01LGG
ENSG00000221953C1orf229rs12723583:247228504:T:C01LGG
ENSG00000221953C1orf229rs2055193:247233285:C:T01LGG
ENSG00000221953C1orf229rs4622098:247225357:C:T01LGG
ENSG00000221953C1orf229rs1007457:247227539:A:G01LGG
ENSG00000221953C1orf229rs12142274:247235316:C:T01LGG
ENSG00000221953C1orf229rs6664157:247239070:T:C01LGG
ENSG00000221953C1orf229rs1874407:247223477:C:T01LGG
ENSG00000221953C1orf229rs12127349:247234861:G:A01LGG
ENSG00000221953C1orf229rs12080836:247266872:G:A01LGG
ENSG00000221953C1orf229rs10924917:247266877:A:G01LGG
ENSG00000221953C1orf229rs7528817:247226994:C:T01LGG
ENSG00000221953C1orf229rs34764574:247227025:T:G01LGG
ENSG00000221953C1orf229rs6658298:247247178:C:T01LGG
ENSG00000221953C1orf229rs6695894:247228450:T:C01LGG
ENSG00000221953C1orf229rs12740588:247197861:A:T01LGG
ENSG00000221953C1orf229rs6676355:247223730:A:T01LGG
ENSG00000221953C1orf229rs6677000:247224284:A:G01LGG
ENSG00000221953C1orf229rs12119007:247218227:T:C01LGG
ENSG00000221953C1orf229rs2642962:247209049:T:C01LGG
ENSG00000221953C1orf229rs192432:247211449:G:A01LGG
ENSG00000221953C1orf229rs2172795:247206375:G:A01LGG
ENSG00000221953C1orf229rs273378:247212461:T:C01LGG
ENSG00000221953C1orf229rs10754536:247262943:G:A01LGG
ENSG00000221953C1orf229rs7518407:247214479:A:G01LGG
ENSG00000221953C1orf229rs12140839:247208890:G:A01LGG
ENSG00000221953C1orf229rs71566686:247210413:AG:A01LGG
ENSG00000221953C1orf229rs34252176:247232745:C:CA01LGG
ENSG00000221953C1orf229rs34225777:247204723:C:T01LGG
ENSG00000221953C1orf229rs34919391:247212843:A:G01LGG
ENSG00000221953C1orf229rs12122715:247226753:T:C01LGG
ENSG00000221953C1orf229rs2890339:247298975:G:A01LGG
ENSG00000221953C1orf229rs34060714:247204467:G:C01LGG
ENSG00000221953C1orf229rs2255481:247196539:A:G:-1LGG0
ENSG00000221953C1orf229rs166643:247210142:T:C01LGG
ENSG00000221953C1orf229rs6426209:247208972:T:G01LGG

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000221953.5ENST00000623686.1822472