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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000219545

Summary for UMAD1

check button Gene summary

Gene informationEnsembl ID

ENSG00000219545

Gene symbol

UMAD1

Gene name
HGNC
Entrez ID

729852

Gene typeantisense
Synonyms
UniProtAcc

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Structure and expression level for UMAD1

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002195453.545855e-011.685176e-02CHOL1.872171e-02

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lncRNA-Protein interaction for UMAD1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000219545ENST00000482067UMAD1ENSG00000146247PHIP68.7993.5737Q8WWQ0EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000067369TP53BP166.5390.9547Q12888EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000168137SETD559.3290.1535Q9C0A6EpiPredict
ENSG00000219545ENST00000482067UMAD1ENSG00000185658BRWD158.1190.5822Q9NSI6EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000165632TAF355.8991.3842Q5VWG9EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000118058KMT2A55.494.7986Q03164TF,EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000197724PHF252.5390.335O75151EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000171316CHD751.9990.0105Q9P2D1EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000085224ATRX49.3294.97P46100EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000185658BRWD148.3592.0329Q9NSI6EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000141027NCOR145.3190.9574O75376EpiNA
ENSG00000219545ENST00000493246UMAD1ENSG00000149311ATM44.9892.2855Q13315EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000147133TAF141.9891.86P21675EpiNA
ENSG00000219545ENST00000482067UMAD1ENSG00000198646NCOA640.2591.5439Q14686EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000131149GSE140.1490.4652Q14687EpiNA
ENSG00000219545ENST00000493246UMAD1ENSG00000096968JAK238.890.6522O60674EpiNA
ENSG00000219545ENST00000493246UMAD1ENSG00000196367TRRAP38.1192.1645Q9Y4A5EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000171634BPTF37.9890.0979Q12830TF,EpiNA
ENSG00000219545ENST00000493246UMAD1ENSG00000253729PRKDC37.8495.0387P78527EpiNA
ENSG00000219545ENST00000493246UMAD1ENSG00000164080RAD54L237.1690.9385Q9Y4B4EpiPredict
ENSG00000219545ENST00000493246UMAD1ENSG00000187555USP732.390.899Q93009EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000156650KAT6B18.8993.5932Q8WYB5EpiPredict
ENSG00000219545ENST00000471760UMAD1ENSG00000105821DNAJC24.4291.149Q99543EpiNA
ENSG00000219545ENST00000482067UMAD1ENSG00000198604BAZ1A77.6891.608Q9NRL2EpiPredict
ENSG00000219545ENST00000471760UMAD1ENSG00000123636BAZ2B67.4994.6399Q9UIF8TF,EpiNA
ENSG00000219545ENST00000482067UMAD1ENSG00000181555SETD263.3291.2437Q9BYW2EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000155827RNF2061.5990.4406Q5VTR2EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000032219ARID4A58.9992.705P29374EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000054267ARID4B58.8792.8811Q4LE39EpiPredict
ENSG00000219545ENST00000471760UMAD1ENSG00000048649RSF158.2691.9526Q96T23EpiPredict
ENSG00000219545ENST00000482067UMAD1ENSG00000165288BRWD358.1593.8955Q6RI45EpiPredict
ENSG00000219545ENST00000471760UMAD1ENSG00000009954BAZ1B57.1691.8851Q9UIG0EpiPredict
ENSG00000219545ENST00000471760UMAD1ENSG00000005483KMT2E52.7991.7415Q8IZD2EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000165671NSD152.493.9394Q96L73EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000181555SETD251.9693.7213Q9BYW2EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000104517UBR548.1890.9592O95071RBP,EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000086758HUWE147.0494.8172Q7Z6Z7EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000005339CREBBP46.8391.8867Q92793EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000055609KMT2C46.3594.4039Q8NEZ4EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000012048BRCA141.4392.6179P38398RBP,EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000164190NIPBL39.2493.5223Q6KC79EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000084093REST36.6791.0157Q13127TF,EpiNA
ENSG00000219545ENST00000493246UMAD1ENSG00000163939PBRM136.1291.2043Q86U86EpiPredict
ENSG00000219545ENST00000493246UMAD1ENSG00000196116TDRD734.6990.585Q8NHU6EpiNA
ENSG00000219545ENST00000493246UMAD1ENSG00000086758HUWE134.6590.202Q7Z6Z7EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000137337MDC132.9992.1983Q14676EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000083168KAT6A28.7592.8201Q92794EpiNA
ENSG00000219545ENST00000482067UMAD1ENSG00000135999EPC222.1291.5422Q52LR7EpiNA

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000219545ENST00000482067UMAD1ENSG00000118058KMT2A62.5790.1418Q03164TF,EpiNA
ENSG00000219545ENST00000482067UMAD1ENSG00000116539ASH1L54.2390.5097Q9NR48TF,EpiNA
ENSG00000219545ENST00000482067UMAD1ENSG00000198176TFDP14.2891.7072Q14186TF,EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000102189EEA168.1892.2566Q15075TFPredict
ENSG00000219545ENST00000471760UMAD1ENSG00000123636BAZ2B67.4994.7045Q9UIF8TF,EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000025293PHF2066.1390.2464Q9BVI0TF,EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000144747TMF158.2892.0703P82094TFPredict
ENSG00000219545ENST00000471760UMAD1ENSG00000118058KMT2A55.494.7095Q03164TF,EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000171634BPTF37.9890.4722Q12830TF,EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000167232ZNF9135.0591.5377Q05481TFNA
ENSG00000219545ENST00000471760UMAD1ENSG00000117000RLF33.3291.6021Q13129TFNA
ENSG00000219545ENST00000471760UMAD1ENSG00000140836ZFHX324.3893.592Q15911TFNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000219545ENST00000471760UMAD1ENSG00000056097ZFR67.2793.3007Q96KR1RBPNA
ENSG00000219545ENST00000471760UMAD1ENSG00000104517UBR548.1891.6369O95071RBP,EpiNA
ENSG00000219545ENST00000471760UMAD1ENSG00000198000NOL846.3290.835Q76FK4RBPNA
ENSG00000219545ENST00000471760UMAD1ENSG00000137776SLTM43.3695.1432Q9NWH9RBPNA
ENSG00000219545ENST00000471760UMAD1ENSG00000012048BRCA141.4393.446P38398RBP,EpiNA
ENSG00000219545ENST00000493246UMAD1ENSG00000068784SRBD137.0590.8639Q8N5C6RBPNA
ENSG00000219545ENST00000471760UMAD1ENSG00000078269SYNJ236.590.0547O15056RBPPredict
ENSG00000219545ENST00000493246UMAD1ENSG00000129566TEP134.9791.2635Q99973RBPNA
ENSG00000219545ENST00000493246UMAD1ENSG00000114127XRN134.1990.9874Q8IZH2RBPPredict
ENSG00000219545ENST00000493246UMAD1ENSG00000021776AQR31.7190.2981O60306RBPPredict
ENSG00000219545ENST00000471760UMAD1ENSG00000133226SRRM117.4993.519Q8IYB3RBPNA
ENSG00000219545ENST00000471760UMAD1ENSG00000083544TDRD315.7190.7335Q9H7E2RBP,EpiNA

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lncRNA-DNA interaction for UMAD1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for UMAD1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
TECR,GRAMD1A,PGP,SH3GL1,CHKB,FAM189B,DAPK3,ECH1,RNF181,SF3A2,S100A11,PAXX,PCYT2,IER5L,IMP4,GSTP1,ANAPC11,CSK,FPGS,FXYD5,RPS19BP1,MFSD5,PCGF2,EDF1,FNDC10,CLPP,AUP1,RPL35A,DMAC2,PARVB,ASPSCR1,PICK1,MRPL27,RANGAP1,MVD,C4orf48,OST4,MIIP,NXN,MYG1,ANKRD39,PPP1R13L,STX10,SLIRP,LIMD2,TSR3,EHD1,CNPY3,TLE5,STK11,LRFN4,OGFOD3,PNPLA6,TUFM,AP2M1,GCAT,MRPS26,COPE,SCYL1,MRPS12,LRSAM1,POLR2L,PPP1CA,PFN1,SELENOO,ADAT3,VWA1,UBALD2,MRPL41,ATXN7L2,SDF2L1,PPDPF,CSNK1E,ARFRP1,SH2B2,ALDH16A1,CHMP1A,NDUFV1,MRPL2,TYMP,MRPL28,HMOX2,PIDD1,YDJC,MRPL37,WDR74,LYPLA2,HRAS,RHBDD3,FBXW5,RPL32,STUB1,PTMS,TRIR,MZT2B,TMC6,PIEZO1,RPSA,NDUFAF8,LZTR1,MRPL4,PPP2R3B,SHF,NOSIP,SAC3D1,IPO4,SLC25A1,COQ4,EEF2,TBL3,TRPT1,FIZ1,RRP1,PGLS,ANKRD54,PCGF1,PEX16,FAM207A,NT5DC2,NDUFS8,NDUFS7,TMEM258,NFKBIL1,HES4,FDXR,ARF5,CFAP410,ATG9A,VPS51,NFKB2,FAM71E1,HLX,JMJD4,ARMC6,HDGFL2,FBXW9,ELMO3,GRWD1,NACC1,FAM160B2,YJU2,SLC39A3,PFDN6,TRIM47,INTS11,TXNRD2,OGFR,MFSD12,FKBP2,NDUFB8,PEMT,SCX,GFUS,RAB40C,E4F1,RTKN,GEMIN7,TMEM147,TM7SF2,RPL37A,DPP7,REX1BD,RTL8C,FAAP20,TOMM40,ENDOG,RPL36A,PWWP2B,CHMP4A,AURKAIP1,RFXANK,ALDOA,SLC19A1,VARS1,NAA38,BCL7C,GTF3C5,POLL,SPINDOC,ARPC4,JUND,BCL2L12,FAM234A,RUVBL2,YPEL3,REEP4,LONP1,KIAA0930,TMUB1,SERF2,GRK2,CNFN,SPATC1L,TIMM17B,ATF4,TUBGCP2,MBD3,C12orf57,CCDC137,POLE4,DCXR,ISY1,TOM1,BOK,SH3BGRL3,RPL35,KRTCAP2,SNRPD2,NPRL3,KPTN,CLTB,DGAT1,NELFB,CAPNS1,NCAPH2,CTBP1,PKN1,PPP1R14A,FKBP8,ABHD17A,RHOG,UBXN1,RPS11,TK1,DUS2,ERCC1,RHOT2,UNC93B1,CENPT,FZR1,FUOM,GPX1,RNF25,HDAC10,MPST,RBM42,SART1,C11orf24,TMEM222,CENPB,CSNK1G2,CRIP2,LRP5,HPS6,ZNHIT2,RAB34,MRTO4,PSMD4,SARS2,SIPA1,DPM2,TMEM39B,SURF2,RABAC1,AP2S1,PUF60,FASN,RAC3,CLTA,DOHH,MACROD1,MVK,JMJD8,MTA2,ADCK5,ERCC2,RARG,ZDHHC12,TUBB4B,FBXL6,NENF,NAT14,ARRDC1,DDX54,MFSD10,ELOF1,SNRPA,ATP5F1D,COX8A,EXD3,OTUB1,ATAD3A,AGPAT2,TOR2A,LSM7,AGTRAP,DUSP23,ZMYND19,SLC52A2,METTL26,SAP30BP,MAP3K11,FDX2,B4GALT7,RNF208,DEAF1,SHARPIN,TRIOBP,DNAJC4,MYPOP,SLC66A2,TCIRG1,ARFGAP2,SAMD10,CDC37,NUDT8,FBXL15,MLST8,PEX14,MOB2,LRRC45,PLEKHO1,CDC34,PHB2,CIAO3,VPS28,CCDC61,TAPBP,BCKDK,PTOV1,CPTP,BABAM1,SCNM1,CTU2,SPPL2B,NDUFS5,CHMP2A,CYHR1,RPL13A,GYS1,FAM50A,CLUH,IFITM3,FAAP100,SLC25A10,THAP7,PTGES2,FHOD1,LGALS1,PSMD13,TFPT,HSD11B1L,RAB4B,PRKD2,MBOAT7,THAP3,YIF1A,C1orf159,ITPA,PRMT7,GPX4,NME3,USE1,CEP131,RABL6,FAM174C,ALG3,ATP5MC2,ROM1,PFDN5,WDR24,WDR83OS,WDR13,PARP10,MZT2A,SIVA1,MRPL55,ROMO1,S1PR4,TMEM259,NDUFB10,SMARCB1,METRNL,C8orf82,STK25,SERPINH1,GLI4,GAPDH,SORBS3,COMTD1,MVB12A,WDR83,SLC25A22,MYL6B,MAP1S,HSPB1,PLEKHJ1,SHB,HSD17B10,PFKL,CST3,LMNA,CSNK2B,KIAA2013,RABEP2,MPND,HEXD,ZYX,SGF29,HIGD2A,UCN,PPP2R1A,CUTA,ATG4D,ANAPC2,JOSD2,GSDMD,NDUFB11,VKORC1,CPSF1,FARSA,TWF2,HGH1,RIN1,KLHDC4,UBE2M,ARMC5,AMPD2,LCAT,CHPF,KLHDC3,TSSC4,G6PC3,AIP,IRF3,PRR7,BANF1,NCLN,SLC10A3,EMC9,IFITM2,NPM3,CARS2,TPGS1,NT5C,OXLD1,S100A16,VAX2,NTHL1,CHTF18,POLR2I,MRPL52,RHOD,RHOC,PLEKHF1,RPL10,UQCC2,FASTK,INKA1,ARL6IP4,RPS6KB2,LENG1,UBA52,RACK1,TARBP2,ALKBH7,RIN3,PHKG2,TPRN,ANKRD13D,MTLN,SUGP1,H2AX,GNB2,DHX34,CCS,GGA1,ESS2,PRMT1,SPHK1,PUSL1,TP53I13,RPS10,TMEM91,RRAS,NDUFA13,CD320,TRIM11,EGFL7,CLEC11A,COMT,THOC6,PET100,PTDSS2,CORO7,DDX49,CHCHD10,RAB11B,TMEM238,NELFA,EGLN2,PAFAH1B3,DYNLRB1,PIGQ,MCM5,THAP4,TMEM160,DUS1L,BCAT2,PPP1R16A,TCEA2,CTU1,ABHD14A,RALY,RANBP3,NOP53,MOB3A,ANTKMT,SIL1,ARHGDIA,TRABD,GAMT,TPRA1,RPL36,SCAND1,DDA1,ZNRD2,COX6B1,PSMC3,BOP1,GPS1,LYL1,DDX39A,SMG9,CHCHD5,NAPRT,THOP1,BAD,TSPAN4,PMF1,APRT,USF2,MED25,C19orf48,PPP4C,GRHPR,TNFRSF4,MRPS2,RBM10,TEAD4,TEDC1,RECQL4,R3HDM4,PHLDA3,DPM3,MED16,TMEM250,GALK1,SSBP4,GIPC1,MCRIP1,DYNC2I2,LMF2,TCF25,TXN2,CDK2AP2,PPP6R2,TRMT61A,C19orf25,HSPBP1,PSME2,PLXNA1,QTRT1,ADRM1,EIF3G,NAA60,PPP1R14B,B3GAT3,MIER2,SPATA2L,ECI1,PDLIM7,SYMPK,PES1,DUS3L,PAOX,UBALD1,ENKD1,PFDN2,TSPO,NME4,PIH1D1,SSR4,EVA1B,CXXC1,CIAO2B,MUTYH,CD81,INO80B,ACTG1,GFER,UBE2J2,DGCR6L,EHMT2,C9orf16,MAF1,LGALS3BP,STAP2,MICALL1,TRAPPC1,CFL1,HOMER3,PELP1,NPDC1,MIF,BMP1,CCDC85B,UBE2S,MCAT,MED15,TRIM28,CTDSP1,SHISA5,C20orf27,MCRS1,RCN3,GTPBP6,YIF1B,PPAN,PRR14,BRF1,TELO2,CLASRP,TEDC2,TPI1,TIMM8B,IFI27L2,RPL23,LY6E,KLF16,IDUA,ABHD12,SLC25A28,COMMD4,HCFC1R1,NDUFA3,TMEM134,CD151,DCAF15,TBCB
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000219545ENST00000471760exon_skip_6457chr1:52083339-52083541-16.51-0.1331BTF3L4ENST00000313334Frame-shift
ENSG00000219545ENST00000406829exon_skip_85538chr12:71894324-71894375-10.12-0.2200TBC1D15ENST00000550746In-frame
ENSG00000219545ENST00000482067exon_skip_120741chr15:34228428-34228589-13.93-0.1201EMC4ENST00000267750Frame-shift
ENSG00000219545ENST00000471760exon_skip_137309chr16:66558189-66558348-9.87-0.1161CKLFENST00000264001In-frame
ENSG00000219545ENST00000482067exon_skip_430434chr4:82356536-82356683-11.78-0.1214HNRNPDENST00000313899In-frame
ENSG00000219545ENST00000406829exon_skip_445390chr5:150403120-150403312-23.70-0.1362CD74ENST00000009530In-frame
ENSG00000219545ENST00000471760exon_skip_470226chr7:103307595-103307708-11.74-0.1381PMPCBENST00000249269Frame-shift
ENSG00000219545ENST00000406829exon_skip_476549chr7:76013741-76013887-16.38-0.1437STYXL1ENST00000248600,ENST00000359697,ENST00000431581Frame-shift
ENSG00000219545ENST00000406829exon_skip_106758chr14:55663954-55664041-9.34-0.1112KTN1ENST00000395314In-frame
ENSG00000219545ENST00000406829exon_skip_363747chr22:23877720-23877869-16.43-0.1165SLC2A11ENST00000345044Frame-shift
ENSG00000219545ENST00000406829exon_skip_11528chr1:155136827-155136951-14.15-0.1665SLC50A1ENST00000368404Frame-shift
ENSG00000219545ENST00000482067exon_skip_78771chr11:134248808-134248959-12.79-0.1579THYN1ENST00000341541,ENST00000392594,ENST00000392595Frame-shift
ENSG00000219545ENST00000406829exon_skip_140232chr16:634888-634956-9.87-0.1732METTL26ENST00000301686Frame-shift
ENSG00000219545ENST00000482067exon_skip_336805chr2:9407448-9407598-16.44-0.1981ITGB1BP1ENST00000355346,ENST00000360635In-frame
ENSG00000219545ENST00000471760exon_skip_390418chr3:183842297-183842447-13.37-0.1143PARLENST00000317096In-frame
ENSG00000219545ENST00000406829exon_skip_5818chr1:45568484-45568684-17.83-0.1081AKR1A1ENST00000351829,ENST00000372070Frame-shift
ENSG00000219545ENST00000471760exon_skip_358606chr20:63202286-63203807-43.84-0.1001YTHDF1ENST00000370339In-frame

-lncRNA and exonskipping events are negatively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for UMAD1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA-RBP complex positive regulation
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type
ENSG00000219545ENSG00000056097ZFRexon_skip_6457ENSG00000134717:chr1:52083339-52083541BTF3L4ENST00000313334Frame-shiftSARC,MESO,THYM,PCPG,TGCT
ENSG00000219545ENSG00000068784SRBD1exon_skip_430434ENSG00000138668:chr4:82356536-82356683HNRNPDENST00000313899In-frameUVM,THYM,PAAD,TGCT,THCA
ENSG00000219545ENSG00000114127XRN1exon_skip_430434ENSG00000138668:chr4:82356536-82356683HNRNPDENST00000313899In-frameUVM,THYM,PAAD,TGCT,THCA
ENSG00000219545ENSG00000137776SLTMexon_skip_430434ENSG00000138668:chr4:82356536-82356683HNRNPDENST00000313899In-frameUVM,THYM,PCPG,TGCT,THCA
ENSG00000219545ENSG00000056097ZFRexon_skip_430434ENSG00000138668:chr4:82356536-82356683HNRNPDENST00000313899In-frameUVM,READ,THYM,PCPG,PAAD,TGCT,THCA

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000219545.8ENST00000493246.47196311
ENSG00000219545.8ENST00000463725.484376122
ENSG00000219545.8ENST00000469183.49852348
ENSG00000219545.8ENST00000468567.487603340
ENSG00000219545.8ENST00000471760.49341322
ENSG00000219545.8ENST00000482067.292193468
ENSG00000219545.8ENST00000406829.210310321