 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer | | ENSG00000176236 | C10orf111 | rs72774390:15134114:C:T | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs79247418:15130794:C:G | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs72774380:15126692:A:C | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs141004124:15129331:CTA:C | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs72774385:15130453:C:G | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs72774381:15127366:A:G | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs72774383:15128003:G:T | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs3814172:15139109:T:C | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs72774376:15126406:A:G | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs3814173:15139081:C:A | 0 | | 3 | PRAD,LUSC,BRCA | | ENSG00000176236 | C10orf111 | rs72774394:15140560:A:G | 0 | | 3 | PRAD,LUSC,BRCA | | ENSG00000176236 | C10orf111 | rs75197034:15141446:C:G | 0 | | 3 | PRAD,LUSC,BRCA | | ENSG00000176236 | C10orf111 | rs72774382:15127741:A:G | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs34040166:15146061:C:G | 0 | | 2 | PRAD,BRCA | | ENSG00000176236 | C10orf111 | rs72776103:15159218:T:C | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs11259496:15156609:A:T:+ | 2 | PRAD,BRCA | 0 | | | ENSG00000176236 | C10orf111 | rs45494102:15148115:C:T | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs72774398:15149100:C:G | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs11259501:15159023:T:C | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs111533741:15164688:G:T | 0 | | 2 | PRAD,LUSC | | ENSG00000176236 | C10orf111 | rs3858175:15139633:C:T | 0 | | 1 | PRAD | | ENSG00000176236 | C10orf111 | rs375399673:15135035:CTTTTTTTTTTT:C | 0 | | 2 | PRAD,LGG | | ENSG00000176236 | C10orf111 | rs11259483:15135100:A:G | 0 | | 2 | PRAD,LGG | | ENSG00000176236 | C10orf111 | rs45461898:15154419:G:C | 0 | | 1 | BRCA | | ENSG00000176236 | C10orf111 | rs113204679:15155337:C:G | 0 | | 1 | BRCA | | ENSG00000176236 | C10orf111 | rs12219877:15152952:G:A | 0 | | 1 | BRCA | | ENSG00000176236 | C10orf111 | rs111758350:15153377:G:T | 0 | | 1 | BRCA | | ENSG00000176236 | C10orf111 | rs111559941:15155295:C:T | 0 | | 1 | BRCA | | ENSG00000176236 | C10orf111 | rs7099479:15137347:C:G:- | 1 | LGG | 0 | | | ENSG00000176236 | C10orf111 | rs7897780:15141845:T:C | 0 | | 1 | LGG | | ENSG00000176236 | C10orf111 | rs11259482:15134999:T:A | 0 | | 1 | LGG | | ENSG00000176236 | C10orf111 | rs12254027:15134222:G:A | 0 | | 1 | LGG | | ENSG00000176236 | C10orf111 | rs11259480:15134527:T:C | 0 | | 1 | LGG |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000176236.6 | ENST00000624760.1 | 132 | 962 | 564 |
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