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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000166881

Summary for TMEM194A

check button Gene summary

Gene informationEnsembl ID

ENSG00000166881

Gene symbol

TMEM194A

Gene namenuclear envelope integral membrane protein 1
HGNC

29001

Entrez ID

23306

Gene typeprotein_coding
SynonymsNEMP1|KIAA0286
UniProtAcc

O14524


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for TMEM194A

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
TMEM194A1.18e+031.04e+001.68e-016.21e+005.19e-103.25e-09KICH
TMEM194A9.15e+021.08e+001.51e-017.12e+001.04e-127.87e-12COAD

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Sex-biased somatic mutation for TMEM194A

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for TMEM194A

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
LUADcg14777342chr12:57086307CGI:chr12:57087014-57089333promoter,gene body1.39e-013.34e-023.97e+007.07e-052.10e-041.06e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta

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Exon skipping events with PSI in TCGA for TMEM194A

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for TMEM194A

∗Please access CAeditome for RNA editing annotation.
check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for TMEM194A

check buttonTFs related to TMEM194A.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
TF Gene
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
ESCAFOXM1TMEM194A3.45e+009.05e-034.27e+009.84e-01Female-biased
ESCAPRDM6TMEM194A4.14e+009.87e-013.19e+002.75e-03Male-biased
ESCASP1TMEM194A4.30e+009.92e-013.07e+005.25e-04Male-biased
ESCATEAD4TMEM194A3.12e+006.03e-034.02e+009.83e-01Female-biased
ESCAZBTB17TMEM194A4.01e+009.86e-013.00e+001.83e-03Male-biased
ESCAZNF121TMEM194A4.03e+009.88e-012.43e+005.92e-05Male-biased
ESCAZNF180TMEM194A4.12e+009.86e-013.23e+003.88e-03Male-biased
ESCAZNF184TMEM194A3.39e+006.81e-034.27e+009.86e-01Female-biased
ESCAZNF441TMEM194A4.29e+009.89e-013.39e+003.48e-03Male-biased
ESCAZNF677TMEM194A3.38e+006.36e-034.28e+009.87e-01Female-biased
ESCAZNF770TMEM194A4.04e+009.89e-012.47e+007.09e-05Male-biased
ESCAZNF785TMEM194A2.80e+003.33e-033.83e+009.82e-01Female-biased
LAMLFOXA1TMEM194A5.35e+009.89e-014.38e+008.18e-03Male-biased
LAMLFOXA3TMEM194A5.42e+009.89e-014.46e+008.50e-03Male-biased
LAMLFOXL1TMEM194A5.31e+009.84e-014.47e+001.36e-02Male-biased
LAMLFOXR2TMEM194A5.62e+009.92e-014.57e+006.31e-03Male-biased
LAMLONECUT3TMEM194A5.74e+009.88e-014.84e+001.10e-02Male-biased
LAMLZNF25TMEM194A5.61e+009.89e-014.68e+009.60e-03Male-biased
LAMLZNF354BTMEM194A5.56e+009.84e-014.73e+001.43e-02Male-biased

check buttonTMEM194A related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for TMEM194A

check buttonRBPs related to ES in TMEM194A.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType

check buttonTMEM194A related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs1480024chr12:66778169:G:T--0.2002668375224590.0158475167532561GBMFemale-baised eQTL
rs2555036chr12:55638208:G:A-0.09662577599814210.0284862054576221LUSCFemale-baised eQTL
rs199910679chr12:55594567:G:C-0.09017102995218570.0499013399389541LUSCFemale-baised eQTL
rs17694621chr12:63485913:C:T-0.09031549138563110.0220300817415405KIRCFemale-baised eQTL
rs185741323chr12:63436835:A:G-0.090331107677590.0230224577989794KIRCFemale-baised eQTL
rs17751166chr12:63483375:T:A-0.08926974816568350.0266594936813785KIRCFemale-baised eQTL
rs56127660chr12:63483431:A:G-0.08926974816568350.0266594936813785KIRCFemale-baised eQTL
rs12581265chr12:63441455:G:A-0.08928866197824310.0268199934288332KIRCFemale-baised eQTL
rs4453285chr12:63442791:T:A-0.08928866197824310.0268199934288332KIRCFemale-baised eQTL
rs7315615chr12:63444902:A:T-0.08928866197824310.0268199934288332KIRCFemale-baised eQTL
rs4763085chr12:63450697:A:G-0.08928866197824310.0268199934288332KIRCFemale-baised eQTL
rs4633512chr12:63462278:C:T-0.09084409711024460.0279393676309035KIRCFemale-baised eQTL
rs1014347chr12:63359182:A:G-0.08742769426221810.0345871361643411KIRCFemale-baised eQTL
rs12578486chr12:63477320:T:C-0.08714509319190280.0378689493789699KIRCFemale-baised eQTL
rs34555131chr12:63478573:C:A-0.08714509319190280.0378689493789699KIRCFemale-baised eQTL
rs4426177chr12:63488907:T:G-0.08684497530510670.0387534556451434KIRCFemale-baised eQTL
rs11174970chr12:63430835:T:C-0.08546254815841560.0400475770532477KIRCFemale-baised eQTL
rs73135758chr12:63431551:G:A-0.08546254815841560.0400475770532477KIRCFemale-baised eQTL
rs2137392chr12:63432580:C:T-0.08546254815841560.0400475770532477KIRCFemale-baised eQTL
rs56020455chr12:63433287:T:G-0.08546254815841560.0400475770532477KIRCFemale-baised eQTL
rs73140190chr12:63467893:G:A-0.08670314164132820.0424540859771375KIRCFemale-baised eQTL
rs3847913chr12:63425415:C:G-0.08493273416093230.0444059019053558KIRCFemale-baised eQTL
rs924822chr12:66900681:G:T-0.154323881146140.0217261749635229BLCAFemale-baised eQTL
rs56351333chr12:62088875:T:G-0.138680644195130.0433410365895296BLCAFemale-baised eQTL
rs10877979chr12:63174305:T:G-0.1198597189935850.0465040952136451BLCAFemale-baised eQTL
rs7979948chr12:63178862:C:T-0.1198597189935850.0465040952136451BLCAFemale-baised eQTL
rs11174834chr12:63180918:C:T-0.1198597189935850.0465040952136451BLCAFemale-baised eQTL
rs10161455chr12:63185288:T:C-0.1198597189935850.0465040952136451BLCAFemale-baised eQTL
rs10877987chr12:63188553:T:G-0.1198597189935850.0465040952136451BLCAFemale-baised eQTL
rs1250138chr12:62991234:G:A--0.07389382176245750.0211443914588963LUADFemale-baised eQTL
rs771974chr12:62998230:G:A--0.07024745548004320.0344662557328229LUADFemale-baised eQTL
rs771976chr12:62995076:G:C--0.06848551584293480.0389608513961758LUADFemale-baised eQTL
rs12825989chr12:54848335:T:A-0.04913129613474940.0474060187854193LUADFemale-baised eQTL
rs12367018chr12:54851168:C:G-0.04893322738633310.049852935829779LUADFemale-baised eQTL
rs2071358chr12:47972666:G:T-0.07825960857464960.00804514350840531COADFemale-baised eQTL
rs12367126chr12:59024877:T:G-0.0830775172823410.0194521875412648COADFemale-baised eQTL
rs7299689chr12:47807534:C:T-0.09237398839521690.0289183336477616COADFemale-baised eQTL
rs2731074chr12:48505641:G:A--0.05374832370538950.0329135010053957COADFemale-baised eQTL
rs35979828chr12:54292096:C:T-0.111876699785910.034870546133853COADFemale-baised eQTL
rs4760621chr12:48167479:A:G--0.06723411558099090.0371614038658944COADFemale-baised eQTL
rs6580656chr12:48176821:C:T--0.06646654214019610.0419194483917095COADFemale-baised eQTL
rs7975228chr12:61136925:G:C--0.05824454329153080.042804412307187COADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs10876141chr12:51125867:A:G--0.1732046463673230.0371848876492228SARCMale-baised eQTL
rs2720185chr12:58085697:C:T--0.3069658774502360.0451112308988194SARCMale-baised eQTL
rs11836228chr12:57690561:G:C-0.1540090330607571.31082288294478e-08COADMale-baised eQTL
rs61921615chr12:65986896:T:C-0.1536092197389191.35810337961517e-07COADMale-baised eQTL
rs73134775chr12:63133150:G:A-0.1223687682554441.60243359079137e-05COADMale-baised eQTL
rs11175173chr12:63790883:A:C-0.133939398933185.16509620704621e-05COADMale-baised eQTL
rs2738250chr12:63155813:G:C-0.1084361633487570.00015647800933038COADMale-baised eQTL
rs7953751chr12:65990037:T:C-0.1031715516688950.000192111627756986COADMale-baised eQTL
rs78195265chr12:56928551:C:T-0.142634362960120.000702934106192371COADMale-baised eQTL
rs10082919chr12:53225680:G:T-0.1130910785898820.00116867948255146COADMale-baised eQTL
rs12309437chr12:53226147:C:G-0.1116272798639410.00175658245029729COADMale-baised eQTL
rs2242032chr12:62335441:G:C-0.06301990749783940.00206791901900961COADMale-baised eQTL
rs35634758chr12:62360977:T:G-0.06186896016186770.0023078068802788COADMale-baised eQTL
rs11174449chr12:62374307:C:A-0.06186896016186770.0023078068802788COADMale-baised eQTL
rs10877819chr12:62276031:A:T-0.06097614574005850.0032351380251104COADMale-baised eQTL
rs1678535chr12:57663906:A:G--0.114540863564030.00481945075518086COADMale-baised eQTL
rs2619472chr12:57666190:A:G--0.114540863564030.00481945075518086COADMale-baised eQTL
rs7953584chr12:57704406:G:A-0.1165880002369520.00498492326958939COADMale-baised eQTL
rs74563432chr12:63288096:G:C-0.1165219372943590.00639555230795485COADMale-baised eQTL
rs2229774chr12:53211761:G:A-0.09738878504333950.00835518366664125COADMale-baised eQTL
rs12297219chr12:58449768:A:C-0.06350352733204070.00895634666559757COADMale-baised eQTL
rs1846397chr12:63253076:A:T-0.05947762552193170.00987611943346247COADMale-baised eQTL
rs7967972chr12:63251148:T:C-0.05937407817095440.0102527940324918COADMale-baised eQTL
rs7300729chr12:65518741:A:C-0.07962308722315550.0148939866416942COADMale-baised eQTL
rs10877123chr12:58487490:G:A-0.06918644914131390.0150526314050046COADMale-baised eQTL
rs12305806chr12:58487756:A:G-0.06918644914131390.0150526314050046COADMale-baised eQTL
rs149487444chr12:63340614:T:C-0.09887242565030610.0159408126925755COADMale-baised eQTL
rs10877124chr12:58488095:G:C-0.06886072470631850.0173305592187648COADMale-baised eQTL
rs10878024chr12:63270666:T:C-0.0557821776261160.0173870060054908COADMale-baised eQTL
rs146797800chr12:63340951:G:A-0.09976416362619750.0178550034864089COADMale-baised eQTL
rs7974371chr12:48541947:C:G--0.05653570199380660.0178720575456914COADMale-baised eQTL
rs7135191chr12:63498815:C:T-0.0524684042522060.0182642002917252COADMale-baised eQTL
rs10878026chr12:63270740:T:C-0.05496422911230850.0200290420289831COADMale-baised eQTL
rs10784349chr12:63264506:A:G-0.05559533910277230.0201727932507038COADMale-baised eQTL
rs10878018chr12:63265177:C:G-0.05559533910277230.0201727932507038COADMale-baised eQTL
rs10784351chr12:63265818:T:C-0.05559533910277230.0201727932507038COADMale-baised eQTL
rs11174909chr12:63262263:T:C-0.05424936572363090.0236736490955198COADMale-baised eQTL
rs10878019chr12:63267557:C:G-0.05346520523934060.0248568013916982COADMale-baised eQTL
rs10876341chr12:52774378:T:G-0.05685765054574330.025754698704202COADMale-baised eQTL
rs10878020chr12:63269133:A:G-0.05305161917360080.0262276138563386COADMale-baised eQTL
rs10506327chr12:54131289:C:T-0.07594866197015580.026236267211296COADMale-baised eQTL
rs11175141chr12:63729620:G:A-0.04846966077060930.0340170600670361COADMale-baised eQTL
rs10506375chr12:58479056:T:C-0.06260969750708070.0355225123880407COADMale-baised eQTL
rs7953967chr12:62318289:G:T-0.05439503232450980.0382775185143423COADMale-baised eQTL
rs7956375chr12:63725743:T:G-0.04730618669882010.0392222440107823COADMale-baised eQTL
rs7961265chr12:58484544:A:G-0.06224228780459010.0407894916441228COADMale-baised eQTL
rs11175490chr12:64641065:A:G-0.08687447819014950.040944382052301COADMale-baised eQTL
rs7966981chr12:63270216:C:T-0.05043918284643950.0412469607978195COADMale-baised eQTL
rs10878022chr12:63270433:C:T-0.05043918284643950.0412469607978195COADMale-baised eQTL
rs10878023chr12:63270515:T:G-0.05043918284643950.0412469607978195COADMale-baised eQTL
rs12231227chr12:58483297:T:C-0.06233127812797970.0414999684013995COADMale-baised eQTL
rs28550801chr12:58482607:A:G-0.06212515096898250.0423445862637387COADMale-baised eQTL
rs7972916chr12:63726214:A:G-0.04663663529760420.0443594572791923COADMale-baised eQTL
rs7973343chr12:63726375:G:A-0.04663663529760420.0443594572791923COADMale-baised eQTL
rs574041chr12:63727142:T:C-0.04663663529760420.0443594572791923COADMale-baised eQTL
rs7956412chr12:63728941:C:T-0.04663663529760420.0443594572791923COADMale-baised eQTL
rs11171752chr12:56135847:T:C-0.07226215652004890.0447896035968746COADMale-baised eQTL
rs11172046chr12:56903756:G:C-0.06027606836700660.0449709209555037COADMale-baised eQTL
rs1313102chr12:63489208:C:T--0.04685357463377710.0450786058340397COADMale-baised eQTL
rs11174423chr12:62317444:T:C-0.05300971927248160.0456098139158221COADMale-baised eQTL
rs11836268chr12:62327211:G:A-0.06321782291645790.0477166522643683COADMale-baised eQTL
rs10784352chr12:63271730:G:C-0.04950302737487630.0479738673050983COADMale-baised eQTL
rs7969589chr12:63489720:G:A-0.0469903858774310.0484701389073202COADMale-baised eQTL
rs12307900chr12:62317187:C:T-0.05243307535900510.0492747997309193COADMale-baised eQTL
rs11174433chr12:62345664:A:G-0.05252277984880140.0495764714378839COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of TMEM194A

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource