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Center for Computational Systems Medicine
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Gene summary

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Gene structure and Gene expression level

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Sex-biased somatic mutation

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DNA methylation with beta values in gene

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Exon skipping events with PSI in TCGA

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RNA A-to-I editing events in TCGA

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Sex-biased TF-Gene network of gene

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Sex-biased RBP-ES network of gene

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Sex-biased CeRNA regulation of gene

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Sex-biased eQTL regulation of gene

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Sex-biased eQTM regulation of gene

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Sex-biased sQTL regulation of gene

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Sex-biased sQTM regulation of gene

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Related disease information of gene

Gene: ENSG00000009335

Summary for UBE3C

check button Gene summary

Gene informationEnsembl ID

ENSG00000009335

Gene symbol

UBE3C

Gene nameubiquitin protein ligase E3C
HGNC

16803

Entrez ID

9690

Gene typeprotein_coding
SynonymsUBE3C|KIAA0010|KIAA10
UniProtAcc

Q15386


check buttonDrugs associated with this gene(DrugBank).
Gene IDGene SymbolDrug IDDrug NameDrug Type

check buttonCancer therapeutic drugs associated with this gene(NCI).
Gene IDGene NameDrug IDDrug NameDrug TypeCancer

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Structure and expression level for UBE3C

check buttonAS events and RNA A-to-I editing events of the gene in TCGA based on Genvode V22 structure.
∗For more information on exon skipping events please check the ExonskipDB database.
∗For more information on exon skipping events please check the CAeditome database.
UCSC result

check buttonLandscape of gene expressions across multiple cancer types.
gene expression analysis

check buttonDifferentially expressed gene analysis between tumor male and tumor female samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor male and normal male samples.
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type

check buttonDifferentially expressed gene analysis between tumor female and normal female samples.
DEG result
Coding NameBase Meanlog2FoldChangelfcSEStatP valueP.adjust ValueCancer Type
UBE3C8.27e+031.13e+001.22e-019.26e+002.13e-204.93e-19KICH

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Sex-biased somatic mutation for UBE3C

∗For more information on exon skipping events please check the ExonskipDB database.
Gene IDCancer TypeHugo SymbolMaleFemalepvalorci.upci.lowadjPval

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DNA methylation with beta values for UBE3C

check buttonLandscape of DNA methylation across multiple cancer types.
methylation heatmap

check buttonDifferentially expressed CpG sites between male tumor and female tumor patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
BRCAcg05182265chr7:157140512CGI:chr7:157138475-157139666promoter,gene body6.16e-017.65e-01-2.16e+003.10e-024.15e-02-1.49e-01

check buttonDifferentially expressed CpG sites between male tumor and male normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
LUSCcg05182265chr7:157140512CGI:chr7:157138475-157139666promoter,gene body5.11e-016.49e-01-2.30e+002.13e-022.51e-02-1.38e-01

check buttonDifferentially expressed CpG sites between female tumor and female normal patients.
Cancer TypeCpG SitePositionCpG IslandPosition to Geneave1ave2wilcoxon.wwilcoxon.ppadjdBeta
COADcg05182265chr7:157140512CGI:chr7:157138475-157139666promoter,gene body4.39e-015.83e-01-2.31e+002.07e-022.67e-02-1.44e-01

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Exon skipping events with PSI in TCGA for UBE3C

∗Please access ExonSkipDB for exon skipping annotation.
check buttonLandscape of exon skipping events across multiple cancer types.
AS event heatmap

check buttonDifferentially expressed exon skipping events between male tumor and female tumor patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between male tumor and male normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

check buttonDifferentially expressed exon skipping events between female tumor and female normal patients.
Cancer TypeExon Skippingave.female_Tave.female_Nwilcoxon.wwilcoxon.ppadjdPSI

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RNA A-to-I editing events in TCGA for UBE3C

∗Please access CAeditome for RNA editing annotation.
check buttonLandscape of RNA editing events across multiple cancer types.
ED heatmap

check buttonDifferentially expressed RNA editing events between male tumor and female tumor patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre
LUADUBE3C-008chr7_157232530_+2.39e-013.04e-01-2.64e+008.40e-032.71e-02-6.50e-02
LUSCUBE3C-008chr7_157232459_+2.07e-011.33e-012.37e+001.77e-024.91e-027.35e-02
SKCMUBE3C-008chr7_157232530_+2.98e-012.21e-011.99e+004.63e-024.90e-027.76e-02
COADUBE3C-008chr7_157232445_+4.98e-013.16e-012.28e+002.29e-023.53e-021.82e-01
COADUBE3C-008chr7_157232587_+3.45e-012.77e-012.08e+003.79e-024.41e-026.88e-02
COADUBE3C-008chr7_157232626_+3.10e-011.75e-012.42e+001.57e-022.91e-021.36e-01
STADUBE3C-008chr7_157232530_+2.56e-013.24e-01-2.04e+004.09e-024.96e-02-6.76e-02
STADUBE3C-008chr7_157235112_+1.83e-012.43e-01-2.17e+003.03e-024.96e-02-5.96e-02

check buttonDifferentially expressed RNA editing events between male tumor and male normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonDifferentially expressed RNA editing events between female tumor and female normal patients.
Cancer TypeTranscriptEditingave.male_Tave.female_Twilcoxon.wwilcoxon.pp_adjdFre

check buttonProtein coding RNA editing(s).
Editing PositionVariant TypeGene SymbolTranscript IDNTchangeAAchange

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Sex-biased TF-Gene network for UBE3C

check buttonTFs related to UBE3C.
∗The female-biased TF-gene edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased TF-gene edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
TF Gene
Cancer TypeTFTarget GeneMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
PAADZNF418UBE3C4.62e+009.92e-013.46e+001.93e-03Male-biased
PAADZNF79UBE3C4.21e+009.82e-013.31e+006.85e-03Male-biased
PAADZNF879UBE3C4.29e+009.85e-013.35e+005.73e-03Male-biased

check buttonUBE3C related gene.
∗Only the gene encode TF might with this result.
∗For more information please check Sex-biased TF-Coding gene network.

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Sex-biased RBP-ES network for UBE3C

check buttonRBPs related to ES in UBE3C.
∗The female-biased RBP-ES edges were identified if Female_Edge_threshold>0.98 and Male_Edge_threshold<=0.98.
∗The male-biased RBP-ES edges were identified if Male_Edge_threshold>0.98 and Female_Edge_threshold<=0.98.
RBP ES
Cancer TypeRBPTarget ESMale Edge ScoreMale Edge ThresholdFemale Edge ScoreFemale Edge ThresholdType
UVMZCRB1exon_skip_4728641.12e+012.29e-031.16e+019.97e-01Female-biased
THYMPABPC5exon_skip_4728647.15e+009.13e-037.48e+009.80e-01Female-biased
COADIGF2BP2exon_skip_4728387.68e+009.16e-038.02e+009.82e-01Female-biased
COADIGF2BP3exon_skip_4728387.69e+009.02e-038.03e+009.83e-01Female-biased
COADKHDRBS2exon_skip_4728387.44e+009.81e-037.77e+009.81e-01Female-biased
ESCAPTBP1exon_skip_4728777.24e+009.84e-016.69e+004.62e-03Male-biased
ESCAZC3H10exon_skip_4728419.08e+001.65e-029.47e+009.81e-01Female-biased
READhnRNPKexon_skip_4728668.79e+001.16e-029.11e+009.85e-01Female-biased
READIGF2BP2exon_skip_4728387.69e+001.13e-028.02e+009.80e-01Female-biased
READIGF2BP3exon_skip_4728387.70e+001.13e-028.03e+009.80e-01Female-biased
READZC3H10exon_skip_4728419.57e+009.95e-019.11e+002.34e-03Male-biased
MESOIGF2BP2exon_skip_4728378.68e+008.15e-039.05e+009.87e-01Female-biased
MESOIGF2BP3exon_skip_4728378.65e+008.20e-039.01e+009.87e-01Female-biased
MESOPABPC5exon_skip_4728647.24e+008.84e-037.60e+009.81e-01Female-biased
MESOZC3H10exon_skip_4728419.04e+004.70e-039.46e+009.92e-01Female-biased
GBMHNRNPH2exon_skip_4728685.96e+008.74e-046.54e+009.81e-01Female-biased
KIRCPABPN1exon_skip_4728777.62e+009.85e-017.27e+005.48e-03Male-biased
BLCAHNRNPH2exon_skip_4728686.08e+001.18e-036.66e+009.82e-01Female-biased
SARCZC3H10exon_skip_4728419.10e+002.50e-039.62e+009.95e-01Female-biased

check buttonUBE3C related ES.
∗Only the gene encode RBP might with this result.
∗For more information please check Sex-biased RBP-ES network in cancer.

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Sex-biased CeRNA regulation of gene

check buttonSex-biased CeRNA regulation of gene.
Gene IDceRNA(lncRNA-miRNA-mRNA)GroupCancer Type

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Sex-biased eQTL regulation of gene

check buttonSex-biased eQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
eQTLDescription

check buttonMale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs1076283chr7:149395916:A:G-0.06095995746007820.0184910702514458LUADFemale-baised eQTL
rs2727527chr7:151650376:A:C-0.04539776360565030.0384637879691944LUADFemale-baised eQTL
rs10272564chr7:149008398:G:A-0.0955758434121380.00542335829119724COADFemale-baised eQTL
rs4727005chr7:149007777:C:T-0.09396368445165610.00699779924518216COADFemale-baised eQTL
rs3779039chr7:149013484:C:T-0.0928466621519490.00739621612522477COADFemale-baised eQTL
rs6965440chr7:149023989:A:C-0.09438885601474930.0117772327635955COADFemale-baised eQTL
rs6464930chr7:149023814:C:T-0.09329934231899380.0134267322987106COADFemale-baised eQTL
rs112684174chr7:149024689:A:G-0.09459233270961290.013826825695623COADFemale-baised eQTL
rs112799047chr7:149024797:C:A-0.09459233270961290.013826825695623COADFemale-baised eQTL
rs10233906chr7:149025555:C:T-0.09459233270961290.013826825695623COADFemale-baised eQTL
rs112634954chr7:149024771:G:A-0.09349000646674730.0156123432978186COADFemale-baised eQTL
rs6944853chr7:149024089:G:A-0.08719455658928480.0166647574080698COADFemale-baised eQTL
rs9065chr7:149003757:C:T-0.09711430041526440.0188549448459832COADFemale-baised eQTL
rs6464929chr7:149020375:G:A-0.08494895141142880.0216384683486201COADFemale-baised eQTL
rs66691097chr7:149008851:C:G-0.08507821445537060.021824933312126COADFemale-baised eQTL
rs11980538chr7:149009071:T:C-0.08507821445537060.021824933312126COADFemale-baised eQTL
rs13247593chr7:149026177:A:G-0.0877550777866790.0243968510913959COADFemale-baised eQTL
rs28463009chr7:149011111:G:C-0.08754415430655160.024962611314074COADFemale-baised eQTL
rs4727006chr7:149007843:A:G-0.08349309579321540.0269267589816137COADFemale-baised eQTL
rs7805319chr7:148999077:C:T-0.09496091041961930.0281274822581055COADFemale-baised eQTL
rs7809055chr7:148999211:C:G-0.09496091041961930.0281274822581055COADFemale-baised eQTL
rs6464928chr7:149002830:G:A-0.08372541165569810.0315638411230416COADFemale-baised eQTL
rs1052549chr7:149003450:A:C-0.08372541165569810.0315638411230416COADFemale-baised eQTL
rs6963547chr7:149022576:T:C-0.08836324025662910.0344030032765691COADFemale-baised eQTL
rs10085877chr7:149004554:G:C-0.08562457539211940.0349569048440141COADFemale-baised eQTL
rs10236808chr7:149001382:C:T-0.08214634130836970.0377223685670631COADFemale-baised eQTL
rs7795577chr7:149005394:A:G-0.08133402081676560.0380685426072076COADFemale-baised eQTL
rs28532077chr7:149005065:C:T-0.08481944737670280.0393579066050331COADFemale-baised eQTL
rs7781312chr7:149027144:A:T-0.08459068621148280.0434008923743743COADFemale-baised eQTL
rs1551926chr7:149022491:T:C--0.08164195259296270.0446515669570901COADFemale-baised eQTL
rs6958855chr7:149021946:T:A-0.08442189349580990.0490069360330446COADFemale-baised eQTL

check buttonFemale-specific eQTL regulation.
SNP IDSNP InfoPosition to GeneEffect ScoreFDRCancer TypeBiased Type
rs112857065chr7:155969463:G:A-0.08193996348914490.0140502336880132LGGMale-baised eQTL
rs6459976chr7:155969079:C:T-0.07794540964778980.0277104401011616LGGMale-baised eQTL
rs73181280chr7:157557966:A:T-0.05288500096406630.013169484068171BLCAMale-baised eQTL
rs113717500chr7:157563622:G:A-0.05208592262401110.0152213211113888BLCAMale-baised eQTL
rs4716758chr7:157566869:G:C-0.05208592262401110.0152213211113888BLCAMale-baised eQTL
rs373233384chr7:157563203:T:C-0.05100695191818370.0226160038982506BLCAMale-baised eQTL
rs2788495chr7:158803615:G:A-0.06581258239195140.0329504514973191BLCAMale-baised eQTL
rs10274893chr7:158491550:A:T--0.08136730547628740.00304969885205211LUADMale-baised eQTL
rs10232620chr7:158534547:C:T--0.07544624486099840.0136623659021655LUADMale-baised eQTL
rs10261281chr7:158534627:G:C--0.07544624486099840.0136623659021655LUADMale-baised eQTL
rs10232983chr7:158534856:C:T--0.07543775728936390.0136885597557878LUADMale-baised eQTL
rs4909238chr7:158532880:T:C--0.07364974145570270.0144514706459515LUADMale-baised eQTL
rs10081191chr7:158530114:A:C--0.07309714681930230.0150361379547944LUADMale-baised eQTL
rs12670231chr7:158532646:G:A--0.07309714681930230.0150361379547944LUADMale-baised eQTL
rs4909239chr7:158533395:A:G--0.07309714681930230.0150361379547944LUADMale-baised eQTL
rs12534193chr7:158530510:G:C--0.071957047741630.0226618790916849LUADMale-baised eQTL
rs10265417chr7:158487897:C:T--0.07005574532719920.0232156291362125LUADMale-baised eQTL
rs56083936chr7:158488793:C:G--0.07051031637127040.0236616561859781LUADMale-baised eQTL
rs57121296chr7:158533599:G:A--0.07206245804981280.0237540620827879LUADMale-baised eQTL
rs10225002chr7:158487943:T:C--0.07000228219996730.0248390533511276LUADMale-baised eQTL
rs62481733chr7:155901270:C:T-0.1393691036992787.36221073680511e-05COADMale-baised eQTL
rs61577287chr7:155893664:A:G-0.1281394240282160.000303473179382604COADMale-baised eQTL
rs77365900chr7:155904365:G:A-0.1326163195951170.000697985622417369COADMale-baised eQTL
rs62481737chr7:155904723:C:T-0.1326163195951170.000697985622417369COADMale-baised eQTL
rs117464208chr7:155906279:G:T-0.1328436626497040.000934382388740903COADMale-baised eQTL
rs13246178chr7:154520093:G:T-0.06788016800845150.00365059057014199COADMale-baised eQTL
rs73460109chr7:147783720:C:T-0.1160787473640280.00530101490283313COADMale-baised eQTL
rs12113689chr7:147746400:G:A-0.09981383285923710.0090907220310485COADMale-baised eQTL
rs143394879chr7:147734686:C:A-0.09680534842403520.00983709520555581COADMale-baised eQTL
rs138749160chr7:147734799:T:C-0.09680534842403520.00983709520555581COADMale-baised eQTL
rs926102chr7:153065831:G:A--0.05588550385900250.0108191645848394COADMale-baised eQTL
rs59703369chr7:148468354:G:A-0.1096124089297820.0152602568059692COADMale-baised eQTL
rs75506728chr7:148468537:A:G-0.1096124089297820.0152602568059692COADMale-baised eQTL
rs1234356chr7:150686741:T:C--0.05482133497462690.0155110044336208COADMale-baised eQTL
rs78586460chr7:155933774:A:T-0.08730495638498160.0164056357859301COADMale-baised eQTL
rs150938970chr7:155934816:C:T-0.08730495638498160.0164056357859301COADMale-baised eQTL
rs73475064chr7:147757698:G:T-0.1017296093978290.0177335385171068COADMale-baised eQTL
rs77328689chr7:147729420:A:G-0.09632740234453950.0271136347394841COADMale-baised eQTL
rs75263336chr7:147730106:G:A-0.09632740234453950.0271136347394841COADMale-baised eQTL
rs73475065chr7:147758096:C:G-0.09398155357274470.0303117799113196COADMale-baised eQTL
rs62490366chr7:150677653:A:G-0.0510720562443250.0304060723454548COADMale-baised eQTL
rs112981485chr7:147734334:G:A-0.09368985856362670.0310590659475942COADMale-baised eQTL
rs6962148chr7:148467246:T:C-0.09445666485594610.034426171091476COADMale-baised eQTL
rs6976253chr7:148467845:G:A-0.09445666485594610.034426171091476COADMale-baised eQTL
rs9640245chr7:147791538:G:A-0.09073416870182230.0371424396734037COADMale-baised eQTL
rs73460125chr7:147792352:C:T-0.09073416870182230.0371424396734037COADMale-baised eQTL
rs56279394chr7:150678124:C:T-0.04951943851962320.0393790881118196COADMale-baised eQTL
rs56138121chr7:150678313:G:T-0.04951943851962320.0393790881118196COADMale-baised eQTL
rs62477167chr7:154561879:C:G-0.05951712969212450.0405098162628959COADMale-baised eQTL
rs73460131chr7:147797663:T:C-0.08984055740288010.0405380048631966COADMale-baised eQTL
rs73460128chr7:147792745:A:T-0.08978830529405820.0406419244602651COADMale-baised eQTL
rs12056208chr7:147728374:T:C-0.0907598482816780.0415686809771258COADMale-baised eQTL
rs954395chr7:150673167:A:G-0.04869710824892530.0447838764701683COADMale-baised eQTL
rs62477165chr7:154558404:T:C-0.05979172036573910.0454886877194373COADMale-baised eQTL
rs141832123chr7:147736064:A:G-0.08836087868010650.0466016539338646COADMale-baised eQTL
rs12112564chr7:147747980:A:G-0.08784476845008590.0486898085763718COADMale-baised eQTL

check buttonOpposite sex-biased eQTL regulation.
SNP IDSNP InfoPosition to GeneMale EffectMale FDRFemale EffectFemale FDRSex-biased Gene in CancerCancer Type

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Sex-biased eQTM regulation of gene

check buttonSex-biased eQTM regulation of gene (The figures only show the pairs with FDR<1e-5. For more information please check the below table).
eQTMDescription

check buttonMale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonFemale-specific eQTM regulation.
CpG SiteCpG PostionPosition to GeneEffect ScoreFDRCor.rCor.PvalueCancer Type

check buttonOpposite sex-biased eQTM regulation.
CpG SiteCpG PostionCpG IslandPosition to GeneMale EffectMale FDRFemale EffectFemale FDRMale CorMale P-valueFemale CorFemale P-valueSex-biased Coding GeneCancer Type

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Sex-biased sQTL regulation of gene

check buttonSex-biased sQTL regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTLDescription

check buttonMale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type
exon_skip_472831chr7:157169047:157169122In-framers1184671chr7:157288893:T:CDistant downstream0.05397880085426940.00805170482200301HNSCFemale-baised sQTL

check buttonFemale-specific sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESEffect ScoreFDRCancer TypeBiased Type

check buttonOpposite sex-biased sQTL regulation.
ES IDSkipped ExonORF AnnoSNP IDSNP InfoSNP Position to ESMale EffectMale FDRFemale EffectFemale FDRCancer Type

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Sex-biased sQTM regulation of gene

check buttonSex-biased sQTM regulation of gene (The figures only show the pairs with FDR <1e-5. For more information please check the below table).
sQTMDescription

check buttonMale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonFemale-specific sQTM regulation.
EX IDSkipped ExonCPG SiteCPG PositionPosition to EX EventsEffect ScoreFDRCor.rCor.PvalueORF_annoCancer Type

check buttonOpposite sex-biased sQTM regulation.
EX IDEX InfoSkipped ExonCPG SiteCPG PositionCPG IslandPosition to EX EventsMale EffectMale FDRFemale EffectFemale FDRMale CorrelationMale P-valueFemale CorrelationFemale P-valueORF_annoCancer Type

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Related disease information of UBE3C

check buttonDiseases associated with this gene (DisGeNET).
Gene IDGene SymbolDisease IDDisease NameNumber of PMIDSource
ENSG00000009335UBE3CC0087031Juvenile-Onset Still Disease1CTD_human
ENSG00000009335UBE3CC3495559Juvenile arthritis1CTD_human
ENSG00000009335UBE3CC3714758Juvenile psoriatic arthritis1CTD_human
ENSG00000009335UBE3CC4552091Polyarthritis, Juvenile, Rheumatoid Factor Negative1CTD_human
ENSG00000009335UBE3CC4704862Polyarthritis, Juvenile, Rheumatoid Factor Positive1CTD_human