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Editing gene: PPP4R1 (CAeditome ID:9989)

Gene summary for PPP4R1

Gene summary

Gene information	Gene symbol	PPP4R1
	Gene ID	9989
	Gene name	protein phosphatase 4 regulatory subunit 1
	Synonyms	MEG1\|PP4(Rmeg)\|PP4R1
	Cytomap	18p11.22
	Type of gene	protein-coding
	Description	serine/threonine-protein phosphatase 4 regulatory subunit 1serine/threonine phosphatase 4
	Modification date	20210518
	UniProtAcc	Q8TF05
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for PPP4R1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000154845.14

RNA A-to-I editing events in Cancer.

CAediting_1252820(9548754, -), CAediting_1252821(9554193, -), CAediting_1252822(9554379, -), CAediting_1252823(9555057, -), CAediting_1252824(9555058, -), CAediting_1252825(9555067, -), CAediting_1252826(9555146, -), CAediting_1252827(9555189, -), CAediting_1252828(9555219, -), CAediting_1252829(9555296, -), CAediting_1252830(9556386, -), CAediting_1252831(9564968, -), CAediting_1252832(9565971, -), CAediting_1252833(9565979, -), CAediting_1252834(9566010, -), CAediting_1252835(9566036, -), CAediting_1252836(9566048, -), CAediting_1252837(9566049, -), CAediting_1252838(9566075, -), CAediting_1252839(9566433, -), CAediting_1252840(9566527, -), CAediting_1252841(9566574, -), CAediting_1252842(9566637, -), CAediting_1252843(9568083, -), CAediting_1252844(9568086, -), CAediting_1252845(9568120, -), CAediting_1252846(9568162, -), CAediting_1252847(9568172, -), CAediting_1252848(9568221, -), CAediting_1252849(9568224, -), CAediting_1252850(9568251, -), CAediting_1252851(9568258, -), CAediting_1252852(9568263, -), CAediting_1252853(9568298, -), CAediting_1252854(9568819, -), CAediting_1252855(9568844, -), CAediting_1252856(9568851, -), CAediting_1252857(9568911, -), CAediting_1252858(9568972, -), CAediting_1252859(9569738, -), CAediting_1252860(9569843, -), CAediting_1252861(9569888, -), CAediting_1252862(9569898, -), CAediting_1252863(9569914, -), CAediting_1252864(9569921, -), CAediting_1252865(9569924, -), CAediting_1252866(9569925, -), CAediting_1252867(9569946, -), CAediting_1252868(9569949, -), CAediting_1252869(9569951, -), CAediting_1252870(9570020, -), CAediting_1252871(9570022, -), CAediting_1252872(9570025, -), CAediting_1252873(9570041, -), CAediting_1252874(9577461, -), CAediting_1252875(9577462, -), CAediting_1252876(9577541, -), CAediting_1252877(9577572, -), CAediting_1252878(9577607, -), CAediting_1252879(9577631, -), CAediting_1252880(9578367, -), CAediting_1252881(9578375, -), CAediting_1252882(9578400, -), CAediting_1252883(9578401, -), CAediting_1252884(9578457, -), CAediting_1252885(9578458, -), CAediting_1252886(9594092, -), CAediting_1252887(9594176, -), CAediting_1252888(9594180, -), CAediting_1252889(9594181, -), CAediting_1252890(9594186, -), CAediting_1252891(9594202, -), CAediting_1252892(9598808, -), CAediting_1252893(9598974, -), CAediting_1252894(9600629, -), CAediting_1252895(9600644, -), CAediting_1252896(9600653, -), CAediting_1252897(9600711, -), CAediting_1252898(9600713, -), CAediting_1252899(9600715, -), CAediting_1252900(9600757, -), CAediting_1252901(9600766, -), CAediting_1252902(9600772, -), CAediting_1252903(9600773, -), CAediting_1252904(9600798, -), CAediting_1252905(9600867, -), CAediting_1252906(9601266, -), CAediting_1252907(9601353, -), CAediting_1252908(9601361, -), CAediting_1252909(9601418, -), CAediting_1252910(9601443, -), CAediting_1252911(9601653, -), CAediting_1252912(9601657, -), CAediting_1252913(9601766, -), CAediting_1252914(9601788, -), CAediting_1252915(9603612, -), CAediting_1252916(9603613, -), CAediting_1252917(9603619, -), CAediting_1252918(9603654, -), CAediting_1252919(9603655, -), CAediting_1252920(9603659, -), CAediting_1252921(9603664, -), CAediting_1252922(9603667, -), CAediting_1252923(9603684, -), CAediting_1252924(9603688, -), CAediting_1252925(9603731, -), CAediting_1252926(9603752, -), CAediting_1252927(9603757, -), CAediting_1252928(9603758, -), CAediting_1252929(9603764, -), CAediting_1252930(9607100, -), CAediting_1252931(9607142, -), CAediting_1252932(9607212, -), CAediting_1252933(9607237, -), CAediting_1252934(9607239, -), CAediting_1252935(9607249, -), CAediting_1252936(9607266, -), CAediting_1252937(9607274, -), CAediting_1252938(9607275, -), CAediting_1252939(9607278, -), CAediting_1252940(9607314, -), CAediting_1252941(9607355, -), CAediting_1252942(9607813, -), CAediting_1252943(9607859, -), CAediting_1252944(9607868, -), CAediting_1252945(9607879, -), CAediting_1252946(9607880, -), CAediting_1252947(9607885, -), CAediting_1252948(9607904, -), CAediting_1252949(9607920, -), CAediting_1252950(9607921, -), CAediting_1252951(9607947, -), CAediting_1252952(9607954, -), CAediting_1252953(9607957, -), CAediting_1252954(9607961, -), CAediting_1252955(9607977, -), CAediting_1252956(9607997, -), CAediting_1252957(9608002, -), CAediting_1252958(9608011, -), CAediting_1252959(9608021, -), CAediting_1252960(9608040, -), CAediting_1252961(9608051, -), CAediting_1252962(9608056, -), CAediting_1252963(9608057, -), CAediting_1252964(9610555, -), CAediting_1252965(9610601, -), CAediting_1252966(9610626, -), CAediting_1252967(9610627, -), CAediting_1252968(9610731, -), CAediting_1252969(9612000, -),

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RNA editing positional annotations for PPP4R1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1252820	chr18_9548754_-	ncRNA_intronic
CAediting_1252821	chr18_9554193_-	ncRNA_intronic
CAediting_1252822	chr18_9554379_-	ncRNA_intronic
CAediting_1252823	chr18_9555057_-	ncRNA_intronic
CAediting_1252824	chr18_9555058_-	ncRNA_intronic
CAediting_1252825	chr18_9555067_-	ncRNA_intronic
CAediting_1252826	chr18_9555146_-	ncRNA_intronic
CAediting_1252827	chr18_9555189_-	ncRNA_intronic
CAediting_1252828	chr18_9555219_-	ncRNA_intronic
CAediting_1252829	chr18_9555296_-	ncRNA_intronic
CAediting_1252830	chr18_9556386_-	ncRNA_intronic
CAediting_1252831	chr18_9564968_-	ncRNA_intronic
CAediting_1252832	chr18_9565971_-	ncRNA_intronic
CAediting_1252833	chr18_9565979_-	ncRNA_intronic
CAediting_1252834	chr18_9566010_-	ncRNA_intronic
CAediting_1252835	chr18_9566036_-	ncRNA_intronic
CAediting_1252836	chr18_9566048_-	ncRNA_intronic
CAediting_1252837	chr18_9566049_-	ncRNA_intronic
CAediting_1252838	chr18_9566075_-	ncRNA_intronic
CAediting_1252839	chr18_9566433_-	ncRNA_intronic
CAediting_1252840	chr18_9566527_-	ncRNA_intronic
CAediting_1252841	chr18_9566574_-	ncRNA_intronic
CAediting_1252842	chr18_9566637_-	ncRNA_intronic
CAediting_1252843	chr18_9568083_-	ncRNA_intronic
CAediting_1252844	chr18_9568086_-	ncRNA_intronic
CAediting_1252845	chr18_9568120_-	ncRNA_intronic
CAediting_1252846	chr18_9568162_-	ncRNA_intronic
CAediting_1252847	chr18_9568172_-	ncRNA_intronic
CAediting_1252848	chr18_9568221_-	ncRNA_intronic
CAediting_1252849	chr18_9568224_-	ncRNA_intronic
CAediting_1252850	chr18_9568251_-	ncRNA_intronic
CAediting_1252851	chr18_9568258_-	ncRNA_intronic
CAediting_1252852	chr18_9568263_-	ncRNA_intronic
CAediting_1252853	chr18_9568298_-	ncRNA_intronic
CAediting_1252854	chr18_9568819_-	ncRNA_intronic
CAediting_1252855	chr18_9568844_-	ncRNA_intronic
CAediting_1252856	chr18_9568851_-	ncRNA_intronic
CAediting_1252857	chr18_9568911_-	ncRNA_intronic
CAediting_1252858	chr18_9568972_-	ncRNA_intronic
CAediting_1252859	chr18_9569738_-	ncRNA_intronic
CAediting_1252860	chr18_9569843_-	ncRNA_intronic
CAediting_1252861	chr18_9569888_-	ncRNA_intronic
CAediting_1252862	chr18_9569898_-	ncRNA_intronic
CAediting_1252863	chr18_9569914_-	ncRNA_intronic
CAediting_1252864	chr18_9569921_-	ncRNA_intronic
CAediting_1252865	chr18_9569924_-	ncRNA_intronic
CAediting_1252866	chr18_9569925_-	ncRNA_intronic
CAediting_1252867	chr18_9569946_-	ncRNA_intronic
CAediting_1252868	chr18_9569949_-	ncRNA_intronic
CAediting_1252869	chr18_9569951_-	ncRNA_intronic
CAediting_1252870	chr18_9570020_-	ncRNA_intronic
CAediting_1252871	chr18_9570022_-	ncRNA_intronic
CAediting_1252872	chr18_9570025_-	ncRNA_intronic
CAediting_1252873	chr18_9570041_-	ncRNA_intronic
CAediting_1252874	chr18_9577461_-	ncRNA_intronic
CAediting_1252875	chr18_9577462_-	ncRNA_intronic
CAediting_1252876	chr18_9577541_-	ncRNA_intronic
CAediting_1252877	chr18_9577572_-	ncRNA_intronic
CAediting_1252878	chr18_9577607_-	ncRNA_intronic
CAediting_1252879	chr18_9577631_-	ncRNA_intronic
CAediting_1252880	chr18_9578367_-	ncRNA_intronic
CAediting_1252881	chr18_9578375_-	ncRNA_intronic
CAediting_1252882	chr18_9578400_-	ncRNA_intronic
CAediting_1252883	chr18_9578401_-	ncRNA_intronic
CAediting_1252884	chr18_9578457_-	ncRNA_intronic
CAediting_1252885	chr18_9578458_-	ncRNA_intronic
CAediting_1252886	chr18_9594092_-	ncRNA_intronic
CAediting_1252887	chr18_9594176_-	ncRNA_intronic
CAediting_1252888	chr18_9594180_-	exonic
CAediting_1252889	chr18_9594181_-	exonic
CAediting_1252890	chr18_9594186_-	exonic
CAediting_1252891	chr18_9594202_-	exonic
CAediting_1252892	chr18_9598808_-	ncRNA_intronic
CAediting_1252893	chr18_9598974_-	ncRNA_intronic
CAediting_1252894	chr18_9600629_-	ncRNA_intronic
CAediting_1252895	chr18_9600644_-	ncRNA_intronic
CAediting_1252896	chr18_9600653_-	ncRNA_intronic
CAediting_1252897	chr18_9600711_-	ncRNA_intronic
CAediting_1252898	chr18_9600713_-	ncRNA_intronic
CAediting_1252899	chr18_9600715_-	ncRNA_intronic
CAediting_1252900	chr18_9600757_-	ncRNA_intronic
CAediting_1252901	chr18_9600766_-	ncRNA_intronic
CAediting_1252902	chr18_9600772_-	ncRNA_intronic
CAediting_1252903	chr18_9600773_-	ncRNA_intronic
CAediting_1252904	chr18_9600798_-	ncRNA_intronic
CAediting_1252905	chr18_9600867_-	ncRNA_intronic
CAediting_1252906	chr18_9601266_-	ncRNA_intronic
CAediting_1252907	chr18_9601353_-	ncRNA_intronic
CAediting_1252908	chr18_9601361_-	ncRNA_intronic
CAediting_1252909	chr18_9601418_-	ncRNA_intronic
CAediting_1252910	chr18_9601443_-	ncRNA_intronic
CAediting_1252911	chr18_9601653_-	ncRNA_intronic
CAediting_1252912	chr18_9601657_-	ncRNA_intronic
CAediting_1252913	chr18_9601766_-	ncRNA_intronic
CAediting_1252914	chr18_9601788_-	ncRNA_intronic
CAediting_1252915	chr18_9603612_-	ncRNA_intronic
CAediting_1252916	chr18_9603613_-	ncRNA_intronic
CAediting_1252917	chr18_9603619_-	ncRNA_intronic
CAediting_1252918	chr18_9603654_-	ncRNA_intronic
CAediting_1252919	chr18_9603655_-	ncRNA_intronic
CAediting_1252920	chr18_9603659_-	ncRNA_intronic
CAediting_1252921	chr18_9603664_-	ncRNA_intronic
CAediting_1252922	chr18_9603667_-	ncRNA_intronic
CAediting_1252923	chr18_9603684_-	ncRNA_intronic
CAediting_1252924	chr18_9603688_-	ncRNA_intronic
CAediting_1252925	chr18_9603731_-	ncRNA_intronic
CAediting_1252926	chr18_9603752_-	ncRNA_intronic
CAediting_1252927	chr18_9603757_-	ncRNA_intronic
CAediting_1252928	chr18_9603758_-	ncRNA_intronic
CAediting_1252929	chr18_9603764_-	ncRNA_intronic
CAediting_1252930	chr18_9607100_-	ncRNA_intronic
CAediting_1252931	chr18_9607142_-	ncRNA_intronic
CAediting_1252932	chr18_9607212_-	ncRNA_intronic
CAediting_1252933	chr18_9607237_-	ncRNA_intronic
CAediting_1252934	chr18_9607239_-	ncRNA_intronic
CAediting_1252935	chr18_9607249_-	ncRNA_intronic
CAediting_1252936	chr18_9607266_-	ncRNA_intronic
CAediting_1252937	chr18_9607274_-	ncRNA_intronic
CAediting_1252938	chr18_9607275_-	ncRNA_intronic
CAediting_1252939	chr18_9607278_-	ncRNA_intronic
CAediting_1252940	chr18_9607314_-	ncRNA_intronic
CAediting_1252941	chr18_9607355_-	ncRNA_intronic
CAediting_1252942	chr18_9607813_-	ncRNA_intronic
CAediting_1252943	chr18_9607859_-	ncRNA_intronic
CAediting_1252944	chr18_9607868_-	ncRNA_intronic
CAediting_1252945	chr18_9607879_-	ncRNA_intronic
CAediting_1252946	chr18_9607880_-	ncRNA_intronic
CAediting_1252947	chr18_9607885_-	ncRNA_intronic
CAediting_1252948	chr18_9607904_-	ncRNA_intronic
CAediting_1252949	chr18_9607920_-	ncRNA_intronic
CAediting_1252950	chr18_9607921_-	ncRNA_intronic
CAediting_1252951	chr18_9607947_-	ncRNA_intronic
CAediting_1252952	chr18_9607954_-	ncRNA_intronic
CAediting_1252953	chr18_9607957_-	ncRNA_intronic
CAediting_1252954	chr18_9607961_-	ncRNA_intronic
CAediting_1252955	chr18_9607977_-	ncRNA_intronic
CAediting_1252956	chr18_9607997_-	ncRNA_intronic
CAediting_1252957	chr18_9608002_-	ncRNA_intronic
CAediting_1252958	chr18_9608011_-	ncRNA_intronic
CAediting_1252959	chr18_9608021_-	ncRNA_intronic
CAediting_1252960	chr18_9608040_-	ncRNA_intronic
CAediting_1252961	chr18_9608051_-	ncRNA_intronic
CAediting_1252962	chr18_9608056_-	ncRNA_intronic
CAediting_1252963	chr18_9608057_-	ncRNA_intronic
CAediting_1252964	chr18_9610555_-	ncRNA_intronic
CAediting_1252965	chr18_9610601_-	ncRNA_intronic
CAediting_1252966	chr18_9610626_-	ncRNA_intronic
CAediting_1252967	chr18_9610627_-	ncRNA_intronic
CAediting_1252968	chr18_9610731_-	ncRNA_intronic
CAediting_1252969	chr18_9612000_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1252820	chr18_9548754_-	SINE	Alu	AluSx1
CAediting_1252821	chr18_9554193_-	SINE	Alu	AluSc8
CAediting_1252822	chr18_9554379_-	SINE	Alu	AluSc8
CAediting_1252823	chr18_9555057_-	SINE	Alu	AluJb
CAediting_1252824	chr18_9555058_-	SINE	Alu	AluJb
CAediting_1252825	chr18_9555067_-	SINE	Alu	AluJb
CAediting_1252826	chr18_9555146_-	SINE	Alu	AluJb
CAediting_1252827	chr18_9555189_-	SINE	Alu	AluJb
CAediting_1252828	chr18_9555219_-	SINE	Alu	AluJb
CAediting_1252829	chr18_9555296_-	SINE	Alu	AluJb
CAediting_1252830	chr18_9556386_-	SINE	Alu	AluSx1
CAediting_1252831	chr18_9564968_-	SINE	Alu	AluJo
CAediting_1252832	chr18_9565971_-	SINE	Alu	AluSx
CAediting_1252833	chr18_9565979_-	SINE	Alu	AluSx
CAediting_1252834	chr18_9566010_-	SINE	Alu	AluSx
CAediting_1252835	chr18_9566036_-	SINE	Alu	AluSx
CAediting_1252836	chr18_9566048_-	SINE	Alu	AluSx
CAediting_1252837	chr18_9566049_-	SINE	Alu	AluSx
CAediting_1252838	chr18_9566075_-	SINE	Alu	AluSx
CAediting_1252839	chr18_9566433_-	SINE	Alu	AluSx3
CAediting_1252840	chr18_9566527_-	SINE	Alu	AluSx3
CAediting_1252841	chr18_9566574_-	SINE	Alu	AluSx3
CAediting_1252842	chr18_9566637_-	SINE	Alu	AluSx3
CAediting_1252843	chr18_9568083_-	SINE	Alu	AluJr
CAediting_1252844	chr18_9568086_-	SINE	Alu	AluJr
CAediting_1252845	chr18_9568120_-	SINE	Alu	AluJr
CAediting_1252846	chr18_9568162_-	SINE	Alu	AluJr
CAediting_1252847	chr18_9568172_-	SINE	Alu	AluJr
CAediting_1252848	chr18_9568221_-	SINE	Alu	AluJr
CAediting_1252849	chr18_9568224_-	SINE	Alu	AluJr
CAediting_1252850	chr18_9568251_-	SINE	Alu	AluJr
CAediting_1252851	chr18_9568258_-	SINE	Alu	AluJr
CAediting_1252852	chr18_9568263_-	SINE	Alu	AluJr
CAediting_1252853	chr18_9568298_-	SINE	Alu	AluJr
CAediting_1252854	chr18_9568819_-	SINE	Alu	AluSx
CAediting_1252855	chr18_9568844_-	SINE	Alu	AluSx
CAediting_1252856	chr18_9568851_-	SINE	Alu	AluSx
CAediting_1252857	chr18_9568911_-	SINE	Alu	AluSx
CAediting_1252858	chr18_9568972_-	SINE	Alu	AluSx
CAediting_1252859	chr18_9569738_-	SINE	Alu	AluJb
CAediting_1252860	chr18_9569843_-	SINE	Alu	AluJb
CAediting_1252861	chr18_9569888_-	SINE	Alu	AluJb
CAediting_1252862	chr18_9569898_-	SINE	Alu	AluJb
CAediting_1252863	chr18_9569914_-	SINE	Alu	AluJb
CAediting_1252864	chr18_9569921_-	SINE	Alu	AluJb
CAediting_1252865	chr18_9569924_-	SINE	Alu	AluJb
CAediting_1252866	chr18_9569925_-	SINE	Alu	AluJb
CAediting_1252867	chr18_9569946_-	SINE	Alu	AluJb
CAediting_1252868	chr18_9569949_-	SINE	Alu	AluJb
CAediting_1252869	chr18_9569951_-	SINE	Alu	AluJb
CAediting_1252870	chr18_9570020_-	SINE	Alu	AluJb
CAediting_1252871	chr18_9570022_-	SINE	Alu	AluJb
CAediting_1252872	chr18_9570025_-	SINE	Alu	AluJb
CAediting_1252873	chr18_9570041_-	SINE	Alu	AluJb
CAediting_1252874	chr18_9577461_-	SINE	Alu	AluJb
CAediting_1252875	chr18_9577462_-	SINE	Alu	AluJb
CAediting_1252876	chr18_9577541_-	SINE	Alu	AluJb
CAediting_1252877	chr18_9577572_-	SINE	Alu	AluJb
CAediting_1252878	chr18_9577607_-	SINE	Alu	AluJb
CAediting_1252879	chr18_9577631_-	SINE	Alu	AluJb
CAediting_1252880	chr18_9578367_-	SINE	Alu	AluJr
CAediting_1252881	chr18_9578375_-	SINE	Alu	AluJr
CAediting_1252882	chr18_9578400_-	SINE	Alu	AluJr
CAediting_1252883	chr18_9578401_-	SINE	Alu	AluJr
CAediting_1252884	chr18_9578457_-	SINE	Alu	AluJr
CAediting_1252885	chr18_9578458_-	SINE	Alu	AluJr
CAediting_1252886	chr18_9594092_-	SINE	Alu	AluJb
CAediting_1252887	chr18_9594176_-	SINE	Alu	AluJb
CAediting_1252888	chr18_9594180_-	SINE	Alu	AluJb
CAediting_1252889	chr18_9594181_-	SINE	Alu	AluJb
CAediting_1252890	chr18_9594186_-	SINE	Alu	AluJb
CAediting_1252891	chr18_9594202_-	SINE	Alu	AluJb
CAediting_1252892	chr18_9598808_-	SINE	Alu	AluJb
CAediting_1252893	chr18_9598974_-	SINE	Alu	AluJb
CAediting_1252894	chr18_9600629_-	SINE	Alu	AluJb
CAediting_1252895	chr18_9600644_-	SINE	Alu	AluJb
CAediting_1252896	chr18_9600653_-	SINE	Alu	AluJb
CAediting_1252897	chr18_9600711_-	SINE	Alu	AluJb
CAediting_1252898	chr18_9600713_-	SINE	Alu	AluJb
CAediting_1252899	chr18_9600715_-	SINE	Alu	AluJb
CAediting_1252900	chr18_9600757_-	SINE	Alu	AluJb
CAediting_1252901	chr18_9600766_-	SINE	Alu	AluJb
CAediting_1252902	chr18_9600772_-	SINE	Alu	AluJb
CAediting_1252903	chr18_9600773_-	SINE	Alu	AluJb
CAediting_1252904	chr18_9600798_-	SINE	Alu	AluJb
CAediting_1252905	chr18_9600867_-	SINE	Alu	AluJb
CAediting_1252906	chr18_9601266_-	SINE	Alu	AluSz6
CAediting_1252907	chr18_9601353_-	SINE	Alu	AluSz6
CAediting_1252908	chr18_9601361_-	SINE	Alu	AluSz6
CAediting_1252909	chr18_9601418_-	SINE	Alu	AluSz6
CAediting_1252910	chr18_9601443_-	SINE	Alu	AluSz6
CAediting_1252911	chr18_9601653_-	SINE	Alu	AluSz
CAediting_1252912	chr18_9601657_-	SINE	Alu	AluSz
CAediting_1252913	chr18_9601766_-	SINE	Alu	AluSz
CAediting_1252914	chr18_9601788_-	SINE	Alu	AluSz
CAediting_1252915	chr18_9603612_-	SINE	Alu	AluJb
CAediting_1252916	chr18_9603613_-	SINE	Alu	AluJb
CAediting_1252917	chr18_9603619_-	SINE	Alu	AluJb
CAediting_1252918	chr18_9603654_-	SINE	Alu	AluJb
CAediting_1252919	chr18_9603655_-	SINE	Alu	AluJb
CAediting_1252920	chr18_9603659_-	SINE	Alu	AluJb
CAediting_1252921	chr18_9603664_-	SINE	Alu	AluJb
CAediting_1252922	chr18_9603667_-	SINE	Alu	AluJb
CAediting_1252923	chr18_9603684_-	SINE	Alu	AluJb
CAediting_1252924	chr18_9603688_-	SINE	Alu	AluJb
CAediting_1252925	chr18_9603731_-	SINE	Alu	AluJb
CAediting_1252926	chr18_9603752_-	SINE	Alu	AluJb
CAediting_1252927	chr18_9603757_-	SINE	Alu	AluJb
CAediting_1252928	chr18_9603758_-	SINE	Alu	AluJb
CAediting_1252929	chr18_9603764_-	SINE	Alu	AluJb
CAediting_1252930	chr18_9607100_-	SINE	Alu	AluJb
CAediting_1252931	chr18_9607142_-	SINE	Alu	AluJb
CAediting_1252932	chr18_9607212_-	SINE	Alu	AluJb
CAediting_1252933	chr18_9607237_-	SINE	Alu	AluJb
CAediting_1252934	chr18_9607239_-	SINE	Alu	AluJb
CAediting_1252935	chr18_9607249_-	SINE	Alu	AluJb
CAediting_1252936	chr18_9607266_-	SINE	Alu	AluJb
CAediting_1252937	chr18_9607274_-	SINE	Alu	AluJb
CAediting_1252938	chr18_9607275_-	SINE	Alu	AluJb
CAediting_1252939	chr18_9607278_-	SINE	Alu	AluJb
CAediting_1252940	chr18_9607314_-	SINE	Alu	AluJb
CAediting_1252941	chr18_9607355_-	SINE	Alu	AluJb
CAediting_1252942	chr18_9607813_-	SINE	Alu	AluSx
CAediting_1252943	chr18_9607859_-	SINE	Alu	AluSx
CAediting_1252944	chr18_9607868_-	SINE	Alu	AluSx
CAediting_1252945	chr18_9607879_-	SINE	Alu	AluSx
CAediting_1252946	chr18_9607880_-	SINE	Alu	AluSx
CAediting_1252947	chr18_9607885_-	SINE	Alu	AluSx
CAediting_1252948	chr18_9607904_-	SINE	Alu	AluSx
CAediting_1252949	chr18_9607920_-	SINE	Alu	AluSx
CAediting_1252950	chr18_9607921_-	SINE	Alu	AluSx
CAediting_1252951	chr18_9607947_-	SINE	Alu	AluSx
CAediting_1252952	chr18_9607954_-	SINE	Alu	AluSx
CAediting_1252953	chr18_9607957_-	SINE	Alu	AluSx
CAediting_1252954	chr18_9607961_-	SINE	Alu	AluSx
CAediting_1252955	chr18_9607977_-	SINE	Alu	AluSx
CAediting_1252956	chr18_9607997_-	SINE	Alu	AluSx
CAediting_1252957	chr18_9608002_-	SINE	Alu	AluSx
CAediting_1252958	chr18_9608011_-	SINE	Alu	AluSx
CAediting_1252959	chr18_9608021_-	SINE	Alu	AluSx
CAediting_1252960	chr18_9608040_-	SINE	Alu	AluSx
CAediting_1252961	chr18_9608051_-	SINE	Alu	AluSx
CAediting_1252962	chr18_9608056_-	SINE	Alu	AluSx
CAediting_1252963	chr18_9608057_-	SINE	Alu	AluSx
CAediting_1252964	chr18_9610555_-	SINE	Alu	AluSc
CAediting_1252965	chr18_9610601_-	SINE	Alu	AluSc
CAediting_1252966	chr18_9610626_-	SINE	Alu	AluSc
CAediting_1252967	chr18_9610627_-	SINE	Alu	AluSc
CAediting_1252968	chr18_9610731_-	SINE	Alu	AluSc
CAediting_1252969	chr18_9612000_-	SINE	Alu	AluSp

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RNA A-to-I editing events in the alternative splicing sites for PPP4R1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_1252887	chr18_9594176_-	9594172:9594180	5SS	0+2i	AGGCAGGTG	-21.53	AGGCGGGTG	-20.99
IR	CAediting_1252887	chr18_9594176_-	9594172:9594180	5SS	0+2i	AGGCAGGTG	-21.53	AGGCGGGTG	-20.99
ES	CAediting_1252888	chr18_9594180_-	9594172:9594180	5SS	3+0i	AGGCAGGTG	-21.53	GGGCAGGTG	-23.9
IR	CAediting_1252888	chr18_9594180_-	9594172:9594180	5SS	3+0i	AGGCAGGTG	-21.53	GGGCAGGTG	-23.9

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000154845.14.PPP4R1.

Correlation between RNA A-to-I editing and PSI for ENSG00000154845.14.PPP4R1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PPP4R1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ESCA.CAediting_1252950.ENSG00000154845.PPP4R1.png
Soverview

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Protein coding region RNA A-to-I editings for PPP4R1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for PPP4R1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688080	chr9_63819626_+	ENSG00000154845.14	ENST00000285124	hsa-miR-4477b	9547797	9547803	7mer-m8	9547796	9547816	158	-18.34
CAediting_77128	chr1_85133844_+	ENSG00000154845.14	ENST00000400555	hsa-miR-4423-3p	9547376	9547382	7mer-m8	9547375	9547395	140	-13.35
CAediting_228905	chr2_188297554_+	ENSG00000154845.14	ENST00000400555	hsa-miR-561-3p	9547187	9547193	7mer-m8	9547186	9547210	163	-17.39
CAediting_604450	chr7_133034877_-	ENSG00000154845.14	ENST00000400555	hsa-miR-3654	9547294	9547300	7mer-m8	9547293	9547310	156	-25.61
CAediting_77128	chr1_85133844_+	ENSG00000154845.14	ENST00000285124	hsa-miR-4423-3p	9570247	9570253	7mer-m8	9570246	9570266	140	-12.28
CAediting_442554	chr5_154685830_+	ENSG00000154845.14	ENST00000285124	hsa-miR-1303	9570237	9570244	8mer-1a	9570237	9570259	149	-20.53
CAediting_524911	chr7_5495852_-	ENSG00000154845.14	ENST00000285124	hsa-miR-589-3p	9550328	9550335	8mer-1a	9550328	9550350	146	-16.7
CAediting_228905	chr2_188297554_+	ENSG00000154845.14	ENST00000285124	hsa-miR-561-3p	9549207	9549214	8mer-1a	9549207	9549233	143	-8.56
CAediting_1306323	chr19_13836462_-	ENSG00000154845.14	ENST00000285124	hsa-miR-27a-3p	9547877	9547883	7mer-m8	9547876	9547899	145	-18.68
CAediting_86358	chr1_109598906_+	ENSG00000154845.14	ENST00000285124	hsa-miR-197-5p	9547844	9547850	7mer-m8	9547843	9547866	143	-18.21

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PPP4R1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for PPP4R1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for PPP4R1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for PPP4R1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for PPP4R1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for PPP4R1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene