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Editing gene: USP3 (CAeditome ID:9960)

Gene summary for USP3

Gene summary

Gene information	Gene symbol	USP3
	Gene ID	9960
	Gene name	ubiquitin specific peptidase 3
	Synonyms	SIH003\|UBP
	Cytomap	15q22.31
	Type of gene	protein-coding
	Description	ubiquitin carboxyl-terminal hydrolase 3deubiquitinating enzyme 3ubiquitin thioesterase 3ubiquitin thiolesterase 3ubiquitin-specific-processing protease 3
	Modification date	20210518
	UniProtAcc	Q9Y6I4
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
USP3	GO:0016578	Ubiquitin carboxyl-terminal hydrolase 3	17980597
USP3	GO:0031647	Ubiquitin carboxyl-terminal hydrolase 3	17980597
USP3	GO:0000785	Ubiquitin carboxyl-terminal hydrolase 3	17980597
USP3	GO:0005654	Ubiquitin carboxyl-terminal hydrolase 3	0000052
USP3	GO:0036464	Ubiquitin carboxyl-terminal hydrolase 3	0000052
USP3	GO:0090543	Ubiquitin carboxyl-terminal hydrolase 3	0000052

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RNA A-to-I events for USP3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000140455.15

RNA A-to-I editing events in Cancer.

CAediting_1048121(63520753, +), CAediting_1048122(63524561, +), CAediting_1048123(63527024, +), CAediting_1048124(63529092, +), CAediting_1048125(63529869, +), CAediting_1048126(63529875, +), CAediting_1048127(63529876, +), CAediting_1048128(63529930, +), CAediting_1048129(63529936, +), CAediting_1048130(63529941, +), CAediting_1048131(63529945, +), CAediting_1048132(63529950, +), CAediting_1048133(63529986, +), CAediting_1048134(63529990, +), CAediting_1048135(63529994, +), CAediting_1048136(63530057, +), CAediting_1048137(63530374, +), CAediting_1048138(63530405, +), CAediting_1048139(63530447, +), CAediting_1048140(63530470, +), CAediting_1048141(63530513, +), CAediting_1048142(63530518, +), CAediting_1048143(63530522, +), CAediting_1048144(63530523, +), CAediting_1048145(63530547, +), CAediting_1048146(63530548, +), CAediting_1048147(63534955, +), CAediting_1048148(63536661, +), CAediting_1048149(63536733, +), CAediting_1048150(63537749, +),

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RNA editing positional annotations for USP3 using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_1048142	chr15_63530518_+	nonsynonymous SNV	ENST00000561442.4	c.A112G	p.T38A	D	.	N

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1048121	chr15_63520753_+	ncRNA_intronic
CAediting_1048122	chr15_63524561_+	ncRNA_intronic
CAediting_1048123	chr15_63527024_+	ncRNA_intronic
CAediting_1048124	chr15_63529092_+	exonic
CAediting_1048125	chr15_63529869_+	ncRNA_intronic
CAediting_1048126	chr15_63529875_+	ncRNA_intronic
CAediting_1048127	chr15_63529876_+	ncRNA_intronic
CAediting_1048128	chr15_63529930_+	ncRNA_intronic
CAediting_1048129	chr15_63529936_+	ncRNA_intronic
CAediting_1048130	chr15_63529941_+	ncRNA_intronic
CAediting_1048131	chr15_63529945_+	ncRNA_intronic
CAediting_1048132	chr15_63529950_+	ncRNA_intronic
CAediting_1048133	chr15_63529986_+	ncRNA_intronic
CAediting_1048134	chr15_63529990_+	ncRNA_intronic
CAediting_1048135	chr15_63529994_+	ncRNA_intronic
CAediting_1048136	chr15_63530057_+	ncRNA_intronic
CAediting_1048137	chr15_63530374_+	ncRNA_intronic
CAediting_1048138	chr15_63530405_+	ncRNA_intronic
CAediting_1048139	chr15_63530447_+	ncRNA_intronic
CAediting_1048140	chr15_63530470_+	ncRNA_intronic
CAediting_1048141	chr15_63530513_+	exonic
CAediting_1048142	chr15_63530518_+	exonic
CAediting_1048143	chr15_63530522_+	exonic
CAediting_1048144	chr15_63530523_+	exonic
CAediting_1048145	chr15_63530547_+	exonic
CAediting_1048146	chr15_63530548_+	exonic
CAediting_1048147	chr15_63534955_+	ncRNA_intronic
CAediting_1048148	chr15_63536661_+	ncRNA_intronic
CAediting_1048149	chr15_63536733_+	ncRNA_intronic
CAediting_1048150	chr15_63537749_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1048121	chr15_63520753_+	SINE	Alu	AluSq2
CAediting_1048122	chr15_63524561_+	LTR	ERVL-MaLR	MLT1H1
CAediting_1048123	chr15_63527024_+	SINE	Alu	AluJb
CAediting_1048124	chr15_63529092_+	SINE	Alu	FLAM_A
CAediting_1048125	chr15_63529869_+	SINE	Alu	AluJb
CAediting_1048126	chr15_63529875_+	SINE	Alu	AluJb
CAediting_1048127	chr15_63529876_+	SINE	Alu	AluJb
CAediting_1048128	chr15_63529930_+	SINE	Alu	AluJb
CAediting_1048129	chr15_63529936_+	SINE	Alu	AluJb
CAediting_1048130	chr15_63529941_+	SINE	Alu	AluJb
CAediting_1048131	chr15_63529945_+	SINE	Alu	AluJb
CAediting_1048132	chr15_63529950_+	SINE	Alu	AluJb
CAediting_1048133	chr15_63529986_+	SINE	Alu	AluJb
CAediting_1048134	chr15_63529990_+	SINE	Alu	AluJb
CAediting_1048135	chr15_63529994_+	SINE	Alu	AluJb
CAediting_1048136	chr15_63530057_+	SINE	Alu	AluJb
CAediting_1048137	chr15_63530374_+	SINE	Alu	AluJb
CAediting_1048138	chr15_63530405_+	SINE	Alu	AluJb
CAediting_1048139	chr15_63530447_+	SINE	Alu	AluJb
CAediting_1048140	chr15_63530470_+	SINE	Alu	AluJb
CAediting_1048141	chr15_63530513_+	SINE	Alu	AluJb
CAediting_1048142	chr15_63530518_+	SINE	Alu	AluJb
CAediting_1048143	chr15_63530522_+	SINE	Alu	AluJb
CAediting_1048144	chr15_63530523_+	SINE	Alu	AluJb
CAediting_1048145	chr15_63530547_+	SINE	Alu	AluJb
CAediting_1048146	chr15_63530548_+	SINE	Alu	AluJb
CAediting_1048147	chr15_63534955_+	SINE	Alu	AluSz
CAediting_1048148	chr15_63536661_+	SINE	Alu	AluYh3
CAediting_1048149	chr15_63536733_+	SINE	Alu	AluYh3
CAediting_1048150	chr15_63537749_+	SINE	Alu	AluSp

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RNA A-to-I editing events in the alternative splicing sites for USP3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000140455.15.USP3.

Correlation between RNA A-to-I editing and PSI for ENSG00000140455.15.USP3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for USP3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for USP3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for USP3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63594099	63594105	7mer-m8	63594083	63594106	146	-11.67
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63592648	63592654	7mer-m8	63592631	63592655	140	-11.09
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63593532	63593538	7mer-m8	63593515	63593539	145	-17.3
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63592798	63592804	7mer-m8	63592779	63592805	160	-13.93
CAediting_1160181	chr17_7017644_-	ENSG00000140455.15	ENST00000540797	hsa-miR-195-3p	63593388	63593395	8mer-1a	63593373	63593395	159	-16.71
CAediting_86358	chr1_109598906_+	ENSG00000140455.15	ENST00000540797	hsa-miR-197-5p	63592675	63592682	8mer-1a	63592660	63592682	140	-19.83
CAediting_77128	chr1_85133844_+	ENSG00000140455.15	ENST00000540797	hsa-miR-4423-3p	63592054	63592060	7mer-m8	63592041	63592061	148	-16.18
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000540797	hsa-miR-561-3p	63594215	63594221	7mer-m8	63594201	63594222	147	-8
CAediting_524911	chr7_5495852_-	ENSG00000140455.15	ENST00000540797	hsa-miR-589-3p	63591821	63591827	7mer-m8	63591806	63591828	149	-18.55
CAediting_442554	chr5_154685830_+	ENSG00000140455.15	ENST00000558157	hsa-miR-1303	63574087	63574094	8mer-1a	63574073	63574094	144	-15.65
CAediting_1399425	chr20_1392958_-	ENSG00000140455.15	ENST00000558157	hsa-miR-6869-5p	63588414	63588421	8mer-1a	63588400	63588421	145	-16.73
CAediting_442554	chr5_154685830_+	ENSG00000140455.15	ENST00000559873	hsa-miR-1303	63574087	63574094	8mer-1a	63574073	63574094	144	-15.65
CAediting_442554	chr5_154685830_+	ENSG00000140455.15	ENST00000559192	hsa-miR-1303	63574087	63574094	8mer-1a	63574073	63574094	144	-15.65
CAediting_1399425	chr20_1392958_-	ENSG00000140455.15	ENST00000559192	hsa-miR-6869-5p	63588414	63588421	8mer-1a	63588400	63588421	145	-16.73
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63594099	63594105	7mer-m8	63594083	63594106	146	-11.67
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63592648	63592654	7mer-m8	63592631	63592655	140	-11.09
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63593532	63593538	7mer-m8	63593515	63593539	145	-17.3
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63592798	63592804	7mer-m8	63592779	63592805	160	-13.93
CAediting_1160181	chr17_7017644_-	ENSG00000140455.15	ENST00000559192	hsa-miR-195-3p	63593388	63593395	8mer-1a	63593373	63593395	159	-16.71
CAediting_86358	chr1_109598906_+	ENSG00000140455.15	ENST00000559192	hsa-miR-197-5p	63592675	63592682	8mer-1a	63592660	63592682	140	-19.83
CAediting_77128	chr1_85133844_+	ENSG00000140455.15	ENST00000559192	hsa-miR-4423-3p	63592054	63592060	7mer-m8	63592041	63592061	148	-16.18
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000559192	hsa-miR-561-3p	63594215	63594221	7mer-m8	63594201	63594222	147	-8
CAediting_524911	chr7_5495852_-	ENSG00000140455.15	ENST00000559192	hsa-miR-589-3p	63591821	63591827	7mer-m8	63591806	63591828	149	-18.55
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63594099	63594105	7mer-m8	63594083	63594106	146	-11.67
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63592648	63592654	7mer-m8	63592631	63592655	140	-11.09
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63593532	63593538	7mer-m8	63593515	63593539	145	-17.3
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63592798	63592804	7mer-m8	63592779	63592805	160	-13.93
CAediting_1160181	chr17_7017644_-	ENSG00000140455.15	ENST00000268049	hsa-miR-195-3p	63593388	63593395	8mer-1a	63593373	63593395	159	-16.71
CAediting_86358	chr1_109598906_+	ENSG00000140455.15	ENST00000268049	hsa-miR-197-5p	63592675	63592682	8mer-1a	63592660	63592682	140	-19.83
CAediting_77128	chr1_85133844_+	ENSG00000140455.15	ENST00000268049	hsa-miR-4423-3p	63592054	63592060	7mer-m8	63592041	63592061	148	-16.18
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000268049	hsa-miR-561-3p	63594215	63594221	7mer-m8	63594201	63594222	147	-8
CAediting_524911	chr7_5495852_-	ENSG00000140455.15	ENST00000268049	hsa-miR-589-3p	63591821	63591827	7mer-m8	63591806	63591828	149	-18.55
CAediting_442554	chr5_154685830_+	ENSG00000140455.15	ENST00000538686	hsa-miR-1303	63574087	63574094	8mer-1a	63574073	63574094	144	-15.65
CAediting_1399425	chr20_1392958_-	ENSG00000140455.15	ENST00000538686	hsa-miR-6869-5p	63588414	63588421	8mer-1a	63588400	63588421	145	-16.73
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000560202	hsa-miR-548aa	63594099	63594105	7mer-m8	63594083	63594106	146	-11.67
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000560202	hsa-miR-561-3p	63594215	63594221	7mer-m8	63594201	63594222	147	-8
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000540797	hsa-miR-503-5p	63591218	63591223	6mer	63591204	63591224	153	-25.4
CAediting_468389	chr6_31355314_-	ENSG00000140455.15	ENST00000558157	hsa-miR-6891-5p	63590828	63590834	7mer-m8	63590818	63590835	143	-18.86
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000558157	hsa-miR-503-5p	63591218	63591223	6mer	63591204	63591224	153	-25.4
CAediting_468389	chr6_31355314_-	ENSG00000140455.15	ENST00000559192	hsa-miR-6891-5p	63590828	63590834	7mer-m8	63590818	63590835	143	-18.86
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000559192	hsa-miR-503-5p	63591218	63591223	6mer	63591204	63591224	153	-25.4
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000268049	hsa-miR-503-5p	63591218	63591223	6mer	63591204	63591224	153	-25.4
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000559257	hsa-miR-503-5p	63591218	63591223	6mer	63591204	63591224	153	-25.4
CAediting_468389	chr6_31355314_-	ENSG00000140455.15	ENST00000538686	hsa-miR-6891-5p	63590828	63590834	7mer-m8	63590818	63590835	143	-18.86
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000538686	hsa-miR-503-5p	63591218	63591223	6mer	63591204	63591224	153	-25.4
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000560202	hsa-miR-503-5p	63591218	63591223	6mer	63591204	63591224	153	-25.4

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_414656	chr5_72878640_+	ENSG00000140455.15	ENST00000540797	hsa-miR-4804-3p	63592422	63592428	7mer-m8	63592409	63592429	140	-7.93
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000540797	hsa-miR-503-5p	63591033	63591038	6mer	63591015	63591039	144	-21.79
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000540797	hsa-miR-503-5p	63591818	63591824	7mer-m8	63591806	63591825	151	-17.93
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63592330	63592336	7mer-m8	63592311	63592337	150	-13.48
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63592330	63592336	7mer-m8	63592311	63592337	150	-13.48
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63592330	63592336	7mer-m8	63592311	63592337	150	-13.48
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63593604	63593611	8mer-1a	63593585	63593611	149	-8.09
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63593604	63593611	8mer-1a	63593585	63593611	149	-8.09
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63593604	63593611	8mer-1a	63593585	63593611	149	-8.09
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63591480	63591486	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63591480	63591486	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63591480	63591486	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63591489	63591495	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63591489	63591495	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000540797	hsa-miR-548aa	63591489	63591495	7mer-m8	63591472	63591496	152	-9.38
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000540797	hsa-miR-561-3p	63593102	63593108	7mer-m8	63593089	63593109	154	-11.68
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000540797	hsa-miR-561-3p	63593889	63593895	7mer-m8	63593875	63593896	140	-6.2
CAediting_748296	chr10_51299626_+	ENSG00000140455.15	ENST00000540797	hsa-miR-605-3p	63594413	63594419	7mer-m8	63594399	63594420	150	-15.97
CAediting_748296	chr10_51299626_+	ENSG00000140455.15	ENST00000540797	hsa-miR-605-3p	63594452	63594458	7mer-m8	63594438	63594459	153	-16.57
CAediting_580943	chr7_100356700_+	ENSG00000140455.15	ENST00000540797	hsa-miR-6840-3p	63592659	63592665	7mer-m8	63592649	63592666	147	-27.42
CAediting_580943	chr7_100356700_+	ENSG00000140455.15	ENST00000540797	hsa-miR-6840-3p	63594306	63594311	6mer	63594290	63594312	143	-29.03
CAediting_468389	chr6_31355314_-	ENSG00000140455.15	ENST00000540797	hsa-miR-6891-5p	63591622	63591628	7mer-m8	63591611	63591629	154	-21.31
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000558157	hsa-miR-503-5p	63591033	63591038	6mer	63591015	63591039	144	-21.79
CAediting_414656	chr5_72878640_+	ENSG00000140455.15	ENST00000559192	hsa-miR-4804-3p	63592422	63592428	7mer-m8	63592409	63592429	140	-7.93
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000559192	hsa-miR-503-5p	63591818	63591824	7mer-m8	63591806	63591825	151	-17.93
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000559192	hsa-miR-503-5p	63591033	63591038	6mer	63591015	63591039	144	-21.79
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63592330	63592336	7mer-m8	63592311	63592337	150	-13.48
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63592330	63592336	7mer-m8	63592311	63592337	150	-13.48
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63592330	63592336	7mer-m8	63592311	63592337	150	-13.48
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63593604	63593611	8mer-1a	63593585	63593611	149	-8.09
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63593604	63593611	8mer-1a	63593585	63593611	149	-8.09
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63593604	63593611	8mer-1a	63593585	63593611	149	-8.09
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63591480	63591486	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63591480	63591486	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63591480	63591486	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63591489	63591495	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63591489	63591495	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000559192	hsa-miR-548aa	63591489	63591495	7mer-m8	63591472	63591496	152	-9.38
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000559192	hsa-miR-561-3p	63590817	63590824	8mer-1a	63590801	63590824	154	-12.88
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000559192	hsa-miR-561-3p	63593102	63593108	7mer-m8	63593089	63593109	154	-11.68
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000559192	hsa-miR-561-3p	63593889	63593895	7mer-m8	63593875	63593896	140	-6.2
CAediting_748296	chr10_51299626_+	ENSG00000140455.15	ENST00000559192	hsa-miR-605-3p	63594413	63594419	7mer-m8	63594399	63594420	150	-15.97
CAediting_748296	chr10_51299626_+	ENSG00000140455.15	ENST00000559192	hsa-miR-605-3p	63594452	63594458	7mer-m8	63594438	63594459	153	-16.57
CAediting_580943	chr7_100356700_+	ENSG00000140455.15	ENST00000559192	hsa-miR-6840-3p	63592659	63592665	7mer-m8	63592649	63592666	147	-27.42
CAediting_580943	chr7_100356700_+	ENSG00000140455.15	ENST00000559192	hsa-miR-6840-3p	63594306	63594311	6mer	63594290	63594312	143	-29.03
CAediting_468389	chr6_31355314_-	ENSG00000140455.15	ENST00000559192	hsa-miR-6891-5p	63591622	63591628	7mer-m8	63591611	63591629	154	-21.31
CAediting_414656	chr5_72878640_+	ENSG00000140455.15	ENST00000268049	hsa-miR-4804-3p	63592422	63592428	7mer-m8	63592409	63592429	140	-7.93
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000268049	hsa-miR-503-5p	63591033	63591038	6mer	63591015	63591039	144	-21.79
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000268049	hsa-miR-503-5p	63591818	63591824	7mer-m8	63591806	63591825	151	-17.93
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63592330	63592336	7mer-m8	63592311	63592337	150	-13.48
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63592330	63592336	7mer-m8	63592311	63592337	150	-13.48
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63592330	63592336	7mer-m8	63592311	63592337	150	-13.48
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63593604	63593611	8mer-1a	63593585	63593611	149	-8.09
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63593604	63593611	8mer-1a	63593585	63593611	149	-8.09
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63593604	63593611	8mer-1a	63593585	63593611	149	-8.09
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63591480	63591486	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63591480	63591486	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63591480	63591486	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229413	chr17_67471544_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63591489	63591495	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229414	chr17_67471546_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63591489	63591495	7mer-m8	63591472	63591496	152	-9.38
CAediting_1229415	chr17_67471547_+	ENSG00000140455.15	ENST00000268049	hsa-miR-548aa	63591489	63591495	7mer-m8	63591472	63591496	152	-9.38
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000268049	hsa-miR-561-3p	63593102	63593108	7mer-m8	63593089	63593109	154	-11.68
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000268049	hsa-miR-561-3p	63593889	63593895	7mer-m8	63593875	63593896	140	-6.2
CAediting_748296	chr10_51299626_+	ENSG00000140455.15	ENST00000268049	hsa-miR-605-3p	63594413	63594419	7mer-m8	63594399	63594420	150	-15.97
CAediting_748296	chr10_51299626_+	ENSG00000140455.15	ENST00000268049	hsa-miR-605-3p	63594452	63594458	7mer-m8	63594438	63594459	153	-16.57
CAediting_580943	chr7_100356700_+	ENSG00000140455.15	ENST00000268049	hsa-miR-6840-3p	63592659	63592665	7mer-m8	63592649	63592666	147	-27.42
CAediting_580943	chr7_100356700_+	ENSG00000140455.15	ENST00000268049	hsa-miR-6840-3p	63594306	63594311	6mer	63594290	63594312	143	-29.03
CAediting_468389	chr6_31355314_-	ENSG00000140455.15	ENST00000268049	hsa-miR-6891-5p	63591622	63591628	7mer-m8	63591611	63591629	154	-21.31
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000559257	hsa-miR-503-5p	63591033	63591038	6mer	63591015	63591039	144	-21.79
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000538686	hsa-miR-503-5p	63591033	63591038	6mer	63591015	63591039	144	-21.79
CAediting_1524209	chrX_134546392_-	ENSG00000140455.15	ENST00000560202	hsa-miR-503-5p	63591033	63591038	6mer	63591015	63591039	144	-21.79
CAediting_228905	chr2_188297554_+	ENSG00000140455.15	ENST00000560202	hsa-miR-561-3p	63593889	63593895	7mer-m8	63593875	63593896	140	-6.2
CAediting_580943	chr7_100356700_+	ENSG00000140455.15	ENST00000560202	hsa-miR-6840-3p	63594306	63594311	6mer	63594290	63594312	143	-29.03

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for USP3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for USP3

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for USP3

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for USP3

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for USP3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for USP3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
USP3	C0004238	Atrial Fibrillation	1	CTD_human
USP3	C0235480	Paroxysmal atrial fibrillation	1	CTD_human
USP3	C2585653	Persistent atrial fibrillation	1	CTD_human
USP3	C3468561	familial atrial fibrillation	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene