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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: PJA2 (CAeditome ID:9867) |
Gene summary for PJA2 |
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Gene information | Gene symbol | PJA2 | Gene ID | 9867 |
Gene name | praja ring finger ubiquitin ligase 2 | |
Synonyms | Neurodap1|RNF131 | |
Cytomap | 5q21.3 | |
Type of gene | protein-coding | |
Description | E3 ubiquitin-protein ligase Praja-2RING-type E3 ubiquitin transferase Praja-2praja 2, RING-H2 motif containingpraja ring finger 2, E3 ubiquitin protein ligasepraja2ring finger protein 131 | |
Modification date | 20210530 | |
UniProtAcc | O43164 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
PJA2 | GO:0004842 | E3 ubiquitin-protein ligase Praja-2 | 21423175 |
PJA2 | GO:0016567 | E3 ubiquitin-protein ligase Praja-2 | 21423175 |
PJA2 | GO:0005737 | E3 ubiquitin-protein ligase Praja-2 | 21423175 |
PJA2 | GO:0005737 | E3 ubiquitin-protein ligase Praja-2 | 28471450 |
PJA2 | GO:0005886 | E3 ubiquitin-protein ligase Praja-2 | 21423175 |
PJA2 | GO:0045111 | E3 ubiquitin-protein ligase Praja-2 | 0000052 |
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RNA A-to-I events for PJA2 |
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CAediting_422262(109335497, -), CAediting_422263(109338383, -), CAediting_422264(109338528, -), CAediting_422265(109379606, -), CAediting_422266(109380190, -), CAediting_422267(109380191, -), CAediting_422268(109380205, -), CAediting_422269(109393634, -), CAediting_422270(109394146, -), CAediting_422271(109394159, -), CAediting_422272(109394185, -), CAediting_422273(109394249, -), CAediting_422274(109395374, -), CAediting_422275(109395399, -), CAediting_422276(109395406, -), CAediting_422277(109395416, -), CAediting_422278(109395433, -), CAediting_422279(109395451, -), CAediting_422280(109395513, -), CAediting_422281(109396538, -), CAediting_422282(109396551, -), CAediting_422283(109396559, -), CAediting_422284(109396564, -), CAediting_422285(109396565, -), CAediting_422286(109396591, -), CAediting_422287(109396595, -), CAediting_422288(109396597, -), CAediting_422289(109396598, -), CAediting_422290(109396600, -), CAediting_422291(109396602, -), CAediting_422292(109396603, -), CAediting_422293(109396621, -), CAediting_422294(109396630, -), CAediting_422295(109396631, -), CAediting_422296(109396654, -), CAediting_422297(109396659, -), CAediting_422298(109396662, -), CAediting_422299(109396697, -), CAediting_422300(109396698, -), CAediting_422301(109397743, -), CAediting_422302(109406155, -), |
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RNA editing positional annotations for PJA2 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_422262 | chr5_109335497_- | UTR3 |
CAediting_422263 | chr5_109338383_- | intronic |
CAediting_422264 | chr5_109338528_- | intronic |
CAediting_422265 | chr5_109379606_- | ncRNA_intronic |
CAediting_422266 | chr5_109380190_- | ncRNA_intronic |
CAediting_422267 | chr5_109380191_- | ncRNA_intronic |
CAediting_422268 | chr5_109380205_- | ncRNA_intronic |
CAediting_422269 | chr5_109393634_- | ncRNA_intronic |
CAediting_422270 | chr5_109394146_- | ncRNA_intronic |
CAediting_422271 | chr5_109394159_- | ncRNA_intronic |
CAediting_422272 | chr5_109394185_- | ncRNA_intronic |
CAediting_422273 | chr5_109394249_- | ncRNA_intronic |
CAediting_422274 | chr5_109395374_- | ncRNA_intronic |
CAediting_422275 | chr5_109395399_- | ncRNA_intronic |
CAediting_422276 | chr5_109395406_- | ncRNA_intronic |
CAediting_422277 | chr5_109395416_- | ncRNA_intronic |
CAediting_422278 | chr5_109395433_- | ncRNA_intronic |
CAediting_422279 | chr5_109395451_- | ncRNA_intronic |
CAediting_422280 | chr5_109395513_- | ncRNA_intronic |
CAediting_422281 | chr5_109396538_- | ncRNA_intronic |
CAediting_422282 | chr5_109396551_- | ncRNA_intronic |
CAediting_422283 | chr5_109396559_- | ncRNA_intronic |
CAediting_422284 | chr5_109396564_- | ncRNA_intronic |
CAediting_422285 | chr5_109396565_- | ncRNA_intronic |
CAediting_422286 | chr5_109396591_- | ncRNA_intronic |
CAediting_422287 | chr5_109396595_- | ncRNA_intronic |
CAediting_422288 | chr5_109396597_- | ncRNA_intronic |
CAediting_422289 | chr5_109396598_- | ncRNA_intronic |
CAediting_422290 | chr5_109396600_- | ncRNA_intronic |
CAediting_422291 | chr5_109396602_- | ncRNA_intronic |
CAediting_422292 | chr5_109396603_- | ncRNA_intronic |
CAediting_422293 | chr5_109396621_- | ncRNA_intronic |
CAediting_422294 | chr5_109396630_- | ncRNA_intronic |
CAediting_422295 | chr5_109396631_- | ncRNA_intronic |
CAediting_422296 | chr5_109396654_- | ncRNA_intronic |
CAediting_422297 | chr5_109396659_- | ncRNA_intronic |
CAediting_422298 | chr5_109396662_- | ncRNA_intronic |
CAediting_422299 | chr5_109396697_- | ncRNA_intronic |
CAediting_422300 | chr5_109396698_- | ncRNA_intronic |
CAediting_422301 | chr5_109397743_- | ncRNA_intronic |
CAediting_422302 | chr5_109406155_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_422263 | chr5_109338383_- | SINE | Alu | AluSx3 |
CAediting_422264 | chr5_109338528_- | SINE | Alu | AluSx3 |
CAediting_422266 | chr5_109380190_- | SINE | Alu | AluYa5 |
CAediting_422267 | chr5_109380191_- | SINE | Alu | AluYa5 |
CAediting_422268 | chr5_109380205_- | SINE | Alu | AluYa5 |
CAediting_422269 | chr5_109393634_- | SINE | Alu | FRAM |
CAediting_422270 | chr5_109394146_- | SINE | Alu | AluSx1 |
CAediting_422271 | chr5_109394159_- | SINE | Alu | AluSx1 |
CAediting_422272 | chr5_109394185_- | SINE | Alu | AluSx1 |
CAediting_422273 | chr5_109394249_- | SINE | Alu | AluSx1 |
CAediting_422274 | chr5_109395374_- | SINE | Alu | AluJb |
CAediting_422275 | chr5_109395399_- | SINE | Alu | AluJb |
CAediting_422276 | chr5_109395406_- | SINE | Alu | AluJb |
CAediting_422277 | chr5_109395416_- | SINE | Alu | AluJb |
CAediting_422278 | chr5_109395433_- | SINE | Alu | AluJb |
CAediting_422279 | chr5_109395451_- | SINE | Alu | AluJb |
CAediting_422280 | chr5_109395513_- | SINE | Alu | AluJb |
CAediting_422281 | chr5_109396538_- | SINE | Alu | AluSg |
CAediting_422282 | chr5_109396551_- | SINE | Alu | AluSg |
CAediting_422283 | chr5_109396559_- | SINE | Alu | AluSg |
CAediting_422284 | chr5_109396564_- | SINE | Alu | AluSg |
CAediting_422285 | chr5_109396565_- | SINE | Alu | AluSg |
CAediting_422286 | chr5_109396591_- | SINE | Alu | AluSg |
CAediting_422287 | chr5_109396595_- | SINE | Alu | AluSg |
CAediting_422288 | chr5_109396597_- | SINE | Alu | AluSg |
CAediting_422289 | chr5_109396598_- | SINE | Alu | AluSg |
CAediting_422290 | chr5_109396600_- | SINE | Alu | AluSg |
CAediting_422291 | chr5_109396602_- | SINE | Alu | AluSg |
CAediting_422292 | chr5_109396603_- | SINE | Alu | AluSg |
CAediting_422293 | chr5_109396621_- | SINE | Alu | AluSg |
CAediting_422294 | chr5_109396630_- | SINE | Alu | AluSg |
CAediting_422295 | chr5_109396631_- | SINE | Alu | AluSg |
CAediting_422296 | chr5_109396654_- | SINE | Alu | AluSg |
CAediting_422297 | chr5_109396659_- | SINE | Alu | AluSg |
CAediting_422298 | chr5_109396662_- | SINE | Alu | AluSg |
CAediting_422299 | chr5_109396697_- | SINE | Alu | AluSg |
CAediting_422300 | chr5_109396698_- | SINE | Alu | AluSg |
CAediting_422301 | chr5_109397743_- | SINE | Alu | AluSx1 |
CAediting_422302 | chr5_109406155_- | SINE | Alu | AluY |
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RNA A-to-I editing events in the alternative splicing sites for PJA2 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PJA2 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for PJA2 |
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The effects of the RNA editing to the miRNA binding sites for PJA2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229413 | chr17_67471544_+ | ENSG00000198961.8 | ENST00000361557 | hsa-miR-548aa | 109336823 | 109336830 | 8mer-1a | 109336823 | 109336848 | 155 | -12.61 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000198961.8 | ENST00000361557 | hsa-miR-548aa | 109336918 | 109336924 | 7mer-m8 | 109336917 | 109336940 | 159 | -11.95 |
CAediting_1160181 | chr17_7017644_- | ENSG00000198961.8 | ENST00000361557 | hsa-miR-195-3p | 109335853 | 109335859 | 7mer-m8 | 109335852 | 109335873 | 150 | -11.44 |
CAediting_1351755 | chr19_40282625_- | ENSG00000198961.8 | ENST00000361557 | hsa-miR-641 | 109336287 | 109336293 | 7mer-m8 | 109336286 | 109336309 | 142 | -12.01 |
CAediting_228905 | chr2_188297554_+ | ENSG00000198961.8 | ENST00000361557 | hsa-miR-561-3p | 109336485 | 109336491 | 7mer-m8 | 109336484 | 109336508 | 151 | -8.71 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1160181 | chr17_7017644_- | ENSG00000198961.8 | ENST00000361557 | hsa-miR-195-3p | 109336399 | 109336405 | 7mer-m8 | 109336398 | 109336423 | 148 | -12.24 |
CAediting_393 | chr1_1167164_+ | ENSG00000198961.8 | ENST00000361557 | hsa-miR-200b-3p | 109336360 | 109336366 | 7mer-m8 | 109336359 | 109336378 | 144 | -9.08 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000198961.8 | ENST00000361557 | hsa-miR-548aa | 109335455 | 109335461 | 7mer-m8 | 109335454 | 109335478 | 149 | -8.36 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000198961.8 | ENST00000361557 | hsa-miR-548aa | 109335455 | 109335461 | 7mer-m8 | 109335454 | 109335478 | 149 | -8.36 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000198961.8 | ENST00000361557 | hsa-miR-548aa | 109335455 | 109335461 | 7mer-m8 | 109335454 | 109335478 | 149 | -8.36 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000198961.8 | ENST00000361557 | hsa-miR-548aa | 109335185 | 109335191 | 7mer-1a | 109335185 | 109335210 | 148 | -12.17 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000198961.8 | ENST00000361557 | hsa-miR-548aa | 109335185 | 109335191 | 7mer-1a | 109335185 | 109335210 | 148 | -12.17 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000198961.8 | ENST00000361557 | hsa-miR-548aa | 109335185 | 109335191 | 7mer-1a | 109335185 | 109335210 | 148 | -12.17 |
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The effects of the RNA editing to the stability of the RNA structures for PJA2 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000361189.5 | protein_coding | ![]() | ![]() |
ENST00000361557.4 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_422262 | ENST00000361189.5 | chr5_109335497_- | -1316.00 | -1314.00 | -1316.00 |
CAediting_422262 | ENST00000361557.4 | chr5_109335497_- | -1204.70 | -1202.70 | -1204.70 |
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Relation with ADAR for PJA2 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LIHC | CAediting_422262 | chr5_109335497_- | 9.77026573546432e-05 | 0.369342879497904 | . | . | . | . |
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Relation with cancer stages for PJA2 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for PJA2 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for PJA2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PJA2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |