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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: PLEKHM1 (CAeditome ID:9842) |
Gene summary for PLEKHM1 |
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Gene information | Gene symbol | PLEKHM1 | Gene ID | 9842 |
Gene name | pleckstrin homology and RUN domain containing M1 | |
Synonyms | AP162|B2|OPTA3|OPTB6 | |
Cytomap | 17q21.31 | |
Type of gene | protein-coding | |
Description | pleckstrin homology domain-containing family M member 1162 kDa adapter proteinPH domain-containing family M member 1pleckstrin homology domain containing, family M (with RUN domain) member 1 | |
Modification date | 20210518 | |
UniProtAcc | Q9Y4G2 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
PLEKHM1 | GO:0032418 | Pleckstrin homology domain-containing family M member 1 | 28325809 |
PLEKHM1 | GO:0005730 | Pleckstrin homology domain-containing family M member 1 | 0000052 |
PLEKHM1 | GO:0005764 | Pleckstrin homology domain-containing family M member 1 | 28325809 |
PLEKHM1 | GO:0043231 | Pleckstrin homology domain-containing family M member 1 | 0000052 |
PLEKHM1 | GO:0044754 | Pleckstrin homology domain-containing family M member 1 | 28325809 |
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RNA A-to-I events for PLEKHM1 |
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CAediting_1205342(45440199, -), CAediting_1205343(45446958, -), CAediting_1205344(45447014, -), CAediting_1205345(45447665, -), CAediting_1205346(45465452, -), CAediting_1205347(45465464, -), CAediting_1205348(45465465, -), CAediting_1205349(45465506, -), CAediting_1205350(45465575, -), CAediting_1205351(45465578, -), CAediting_1205352(45465586, -), CAediting_1205353(45465588, -), CAediting_1205354(45465598, -), CAediting_1205355(45465602, -), CAediting_1205356(45465610, -), CAediting_1205357(45465633, -), CAediting_1205358(45465634, -), CAediting_1205359(45465658, -), CAediting_1205360(45465664, -), CAediting_1205361(45465674, -), CAediting_1205362(45465688, -), CAediting_1205363(45467121, -), CAediting_1205364(45467125, -), CAediting_1205365(45467143, -), CAediting_1205366(45467147, -), CAediting_1205367(45467148, -), CAediting_1205368(45467151, -), CAediting_1205369(45467160, -), CAediting_1205370(45467195, -), CAediting_1205371(45467197, -), CAediting_1205372(45467198, -), CAediting_1205373(45467220, -), CAediting_1205374(45467226, -), CAediting_1205375(45467595, -), CAediting_1205376(45467598, -), CAediting_1205377(45467612, -), CAediting_1205378(45467613, -), CAediting_1205379(45467649, -), CAediting_1205380(45467715, -), CAediting_1205381(45469829, -), CAediting_1205382(45469876, -), CAediting_1205383(45469907, -), CAediting_1205384(45470457, -), CAediting_1205385(45470505, -), CAediting_1205386(45470507, -), CAediting_1205387(45470521, -), CAediting_1205388(45470823, -), CAediting_1205389(45470833, -), CAediting_1205390(45470912, -), CAediting_1205391(45470917, -), CAediting_1205392(45470947, -), CAediting_1205393(45470961, -), CAediting_1205394(45471506, -), CAediting_1205395(45471585, -), CAediting_1205396(45471590, -), CAediting_1205397(45471752, -), CAediting_1205398(45473697, -), CAediting_1205399(45473808, -), CAediting_1205400(45474117, -), CAediting_1205401(45474129, -), CAediting_1205402(45474172, -), CAediting_1205403(45474185, -), CAediting_1205404(45474195, -), CAediting_1205405(45474291, -), CAediting_1205406(45474307, -), CAediting_1205407(45474308, -), CAediting_1205408(45474338, -), CAediting_1205409(45475891, -), CAediting_1205410(45475903, -), CAediting_1205411(45477321, -), |
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RNA editing positional annotations for PLEKHM1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1205342 | chr17_45440199_- | exonic |
CAediting_1205343 | chr17_45446958_- | ncRNA_intronic |
CAediting_1205344 | chr17_45447014_- | ncRNA_intronic |
CAediting_1205345 | chr17_45447665_- | ncRNA_intronic |
CAediting_1205346 | chr17_45465452_- | intronic |
CAediting_1205347 | chr17_45465464_- | intronic |
CAediting_1205348 | chr17_45465465_- | intronic |
CAediting_1205349 | chr17_45465506_- | intronic |
CAediting_1205350 | chr17_45465575_- | intronic |
CAediting_1205351 | chr17_45465578_- | intronic |
CAediting_1205352 | chr17_45465586_- | intronic |
CAediting_1205353 | chr17_45465588_- | intronic |
CAediting_1205354 | chr17_45465598_- | intronic |
CAediting_1205355 | chr17_45465602_- | intronic |
CAediting_1205356 | chr17_45465610_- | intronic |
CAediting_1205357 | chr17_45465633_- | intronic |
CAediting_1205358 | chr17_45465634_- | intronic |
CAediting_1205359 | chr17_45465658_- | intronic |
CAediting_1205360 | chr17_45465664_- | intronic |
CAediting_1205361 | chr17_45465674_- | intronic |
CAediting_1205362 | chr17_45465688_- | intronic |
CAediting_1205363 | chr17_45467121_- | intronic |
CAediting_1205364 | chr17_45467125_- | intronic |
CAediting_1205365 | chr17_45467143_- | intronic |
CAediting_1205366 | chr17_45467147_- | intronic |
CAediting_1205367 | chr17_45467148_- | intronic |
CAediting_1205368 | chr17_45467151_- | intronic |
CAediting_1205369 | chr17_45467160_- | intronic |
CAediting_1205370 | chr17_45467195_- | intronic |
CAediting_1205371 | chr17_45467197_- | intronic |
CAediting_1205372 | chr17_45467198_- | intronic |
CAediting_1205373 | chr17_45467220_- | intronic |
CAediting_1205374 | chr17_45467226_- | intronic |
CAediting_1205375 | chr17_45467595_- | intronic |
CAediting_1205376 | chr17_45467598_- | intronic |
CAediting_1205377 | chr17_45467612_- | intronic |
CAediting_1205378 | chr17_45467613_- | intronic |
CAediting_1205379 | chr17_45467649_- | intronic |
CAediting_1205380 | chr17_45467715_- | intronic |
CAediting_1205381 | chr17_45469829_- | ncRNA_intronic |
CAediting_1205382 | chr17_45469876_- | ncRNA_intronic |
CAediting_1205383 | chr17_45469907_- | ncRNA_intronic |
CAediting_1205384 | chr17_45470457_- | ncRNA_intronic |
CAediting_1205385 | chr17_45470505_- | ncRNA_intronic |
CAediting_1205386 | chr17_45470507_- | ncRNA_intronic |
CAediting_1205387 | chr17_45470521_- | ncRNA_intronic |
CAediting_1205388 | chr17_45470823_- | ncRNA_intronic |
CAediting_1205389 | chr17_45470833_- | ncRNA_intronic |
CAediting_1205390 | chr17_45470912_- | ncRNA_intronic |
CAediting_1205391 | chr17_45470917_- | ncRNA_intronic |
CAediting_1205392 | chr17_45470947_- | ncRNA_intronic |
CAediting_1205393 | chr17_45470961_- | ncRNA_intronic |
CAediting_1205394 | chr17_45471506_- | ncRNA_intronic |
CAediting_1205395 | chr17_45471585_- | ncRNA_intronic |
CAediting_1205396 | chr17_45471590_- | ncRNA_intronic |
CAediting_1205397 | chr17_45471752_- | ncRNA_intronic |
CAediting_1205398 | chr17_45473697_- | ncRNA_intronic |
CAediting_1205399 | chr17_45473808_- | ncRNA_intronic |
CAediting_1205400 | chr17_45474117_- | ncRNA_intronic |
CAediting_1205401 | chr17_45474129_- | ncRNA_intronic |
CAediting_1205402 | chr17_45474172_- | ncRNA_intronic |
CAediting_1205403 | chr17_45474185_- | ncRNA_intronic |
CAediting_1205404 | chr17_45474195_- | ncRNA_intronic |
CAediting_1205405 | chr17_45474291_- | ncRNA_intronic |
CAediting_1205406 | chr17_45474307_- | ncRNA_intronic |
CAediting_1205407 | chr17_45474308_- | ncRNA_intronic |
CAediting_1205408 | chr17_45474338_- | ncRNA_intronic |
CAediting_1205409 | chr17_45475891_- | ncRNA_exonic |
CAediting_1205410 | chr17_45475903_- | ncRNA_exonic |
CAediting_1205411 | chr17_45477321_- | ncRNA_exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1205346 | chr17_45465452_- | SINE | Alu | AluSx1 |
CAediting_1205347 | chr17_45465464_- | SINE | Alu | AluSx1 |
CAediting_1205348 | chr17_45465465_- | SINE | Alu | AluSx1 |
CAediting_1205349 | chr17_45465506_- | SINE | Alu | AluSx1 |
CAediting_1205350 | chr17_45465575_- | SINE | Alu | AluSx1 |
CAediting_1205351 | chr17_45465578_- | SINE | Alu | AluSx1 |
CAediting_1205352 | chr17_45465586_- | SINE | Alu | AluSx1 |
CAediting_1205353 | chr17_45465588_- | SINE | Alu | AluSx1 |
CAediting_1205354 | chr17_45465598_- | SINE | Alu | AluSx1 |
CAediting_1205355 | chr17_45465602_- | SINE | Alu | AluSx1 |
CAediting_1205356 | chr17_45465610_- | SINE | Alu | AluSx1 |
CAediting_1205357 | chr17_45465633_- | SINE | Alu | AluSx1 |
CAediting_1205358 | chr17_45465634_- | SINE | Alu | AluSx1 |
CAediting_1205359 | chr17_45465658_- | SINE | Alu | AluSx1 |
CAediting_1205360 | chr17_45465664_- | SINE | Alu | AluSx1 |
CAediting_1205361 | chr17_45465674_- | SINE | Alu | AluSx1 |
CAediting_1205362 | chr17_45465688_- | SINE | Alu | AluSx1 |
CAediting_1205363 | chr17_45467121_- | SINE | Alu | AluJo |
CAediting_1205364 | chr17_45467125_- | SINE | Alu | AluJo |
CAediting_1205365 | chr17_45467143_- | SINE | Alu | AluJo |
CAediting_1205366 | chr17_45467147_- | SINE | Alu | AluJo |
CAediting_1205367 | chr17_45467148_- | SINE | Alu | AluJo |
CAediting_1205368 | chr17_45467151_- | SINE | Alu | AluJo |
CAediting_1205369 | chr17_45467160_- | SINE | Alu | AluJo |
CAediting_1205370 | chr17_45467195_- | SINE | Alu | AluJo |
CAediting_1205371 | chr17_45467197_- | SINE | Alu | AluJo |
CAediting_1205372 | chr17_45467198_- | SINE | Alu | AluJo |
CAediting_1205373 | chr17_45467220_- | SINE | Alu | AluJo |
CAediting_1205374 | chr17_45467226_- | SINE | Alu | AluJo |
CAediting_1205375 | chr17_45467595_- | SINE | Alu | AluSx1 |
CAediting_1205376 | chr17_45467598_- | SINE | Alu | AluSx1 |
CAediting_1205377 | chr17_45467612_- | SINE | Alu | AluSx1 |
CAediting_1205378 | chr17_45467613_- | SINE | Alu | AluSx1 |
CAediting_1205379 | chr17_45467649_- | SINE | Alu | AluSx1 |
CAediting_1205380 | chr17_45467715_- | SINE | Alu | AluSx1 |
CAediting_1205381 | chr17_45469829_- | SINE | Alu | AluSg7 |
CAediting_1205382 | chr17_45469876_- | SINE | Alu | AluSg7 |
CAediting_1205383 | chr17_45469907_- | SINE | Alu | AluSg7 |
CAediting_1205384 | chr17_45470457_- | SINE | Alu | AluSx |
CAediting_1205385 | chr17_45470505_- | SINE | Alu | AluSx |
CAediting_1205386 | chr17_45470507_- | SINE | Alu | AluSx |
CAediting_1205387 | chr17_45470521_- | SINE | Alu | AluSx |
CAediting_1205388 | chr17_45470823_- | SINE | Alu | AluY |
CAediting_1205389 | chr17_45470833_- | SINE | Alu | AluY |
CAediting_1205390 | chr17_45470912_- | SINE | Alu | AluY |
CAediting_1205391 | chr17_45470917_- | SINE | Alu | AluY |
CAediting_1205392 | chr17_45470947_- | SINE | Alu | AluY |
CAediting_1205393 | chr17_45470961_- | SINE | Alu | AluY |
CAediting_1205394 | chr17_45471506_- | SINE | Alu | AluSx1 |
CAediting_1205395 | chr17_45471585_- | SINE | Alu | AluSx1 |
CAediting_1205396 | chr17_45471590_- | SINE | Alu | AluSx1 |
CAediting_1205397 | chr17_45471752_- | SINE | Alu | AluSx1 |
CAediting_1205398 | chr17_45473697_- | SINE | Alu | AluY |
CAediting_1205399 | chr17_45473808_- | SINE | Alu | AluY |
CAediting_1205400 | chr17_45474117_- | SINE | Alu | AluY |
CAediting_1205401 | chr17_45474129_- | SINE | Alu | AluY |
CAediting_1205402 | chr17_45474172_- | SINE | Alu | AluY |
CAediting_1205403 | chr17_45474185_- | SINE | Alu | AluY |
CAediting_1205404 | chr17_45474195_- | SINE | Alu | AluY |
CAediting_1205405 | chr17_45474291_- | SINE | Alu | AluY |
CAediting_1205406 | chr17_45474307_- | SINE | Alu | AluY |
CAediting_1205407 | chr17_45474308_- | SINE | Alu | AluY |
CAediting_1205408 | chr17_45474338_- | SINE | Alu | AluY |
CAediting_1205409 | chr17_45475891_- | SINE | Alu | AluJb |
CAediting_1205410 | chr17_45475903_- | SINE | Alu | AluJb |
CAediting_1205411 | chr17_45477321_- | SINE | Alu | AluSx3 |
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RNA A-to-I editing events in the alternative splicing sites for PLEKHM1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PLEKHM1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for PLEKHM1 |
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The effects of the RNA editing to the miRNA binding sites for PLEKHM1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1205342 | chr17_45440199_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-3145-5p | 45440198 | 45440204 | 7mer-m8 | 45440197 | 45440218 | 140.00 | -8.67 |
CAediting_1205342 | chr17_45440199_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-5695 | 45440199 | 45440205 | 7mer-m8 | 45440198 | 45440220 | 153.00 | -15.55 |
CAediting_1205342 | chr17_45440199_- | ENSG00000225190.7 | ENST00000581448 | hsa-miR-3145-5p | 45440198 | 45440204 | 7mer-m8 | 45440197 | 45440218 | 140.00 | -8.67 |
CAediting_1205342 | chr17_45440199_- | ENSG00000225190.7 | ENST00000581448 | hsa-miR-5695 | 45440199 | 45440205 | 7mer-m8 | 45440198 | 45440220 | 153.00 | -15.55 |
CAediting_1205342 | chr17_45440199_- | ENSG00000225190.7 | ENST00000446609 | hsa-miR-3145-5p | 45440198 | 45440204 | 7mer-m8 | 45440197 | 45440218 | 140.00 | -8.67 |
CAediting_1205342 | chr17_45440199_- | ENSG00000225190.7 | ENST00000446609 | hsa-miR-5695 | 45440199 | 45440205 | 7mer-m8 | 45440198 | 45440220 | 153.00 | -15.55 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000225190.7 | ENST00000430334 | hsa-miR-605-3p | 45436153 | 45436159 | 7mer-m8 | 45436152 | 45436177 | 150 | -18.42 |
CAediting_846604 | chr11_93733708_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-1304-3p | 45468304 | 45468311 | 8mer-1a | 45468304 | 45468327 | 152 | -18.44 |
CAediting_1306324 | chr19_13836464_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-27a-3p | 45439561 | 45439567 | 7mer-m8 | 45439560 | 45439579 | 151 | -17.84 |
CAediting_688080 | chr9_63819626_+ | ENSG00000225190.7 | ENST00000579197 | hsa-miR-4477b | 45439603 | 45439609 | 7mer-m8 | 45439602 | 45439622 | 152 | -10.09 |
CAediting_748296 | chr10_51299626_+ | ENSG00000225190.7 | ENST00000579197 | hsa-miR-605-3p | 45436153 | 45436159 | 7mer-m8 | 45436152 | 45436177 | 150 | -18.42 |
CAediting_1306324 | chr19_13836464_- | ENSG00000225190.7 | ENST00000581448 | hsa-miR-27a-3p | 45439561 | 45439567 | 7mer-m8 | 45439560 | 45439579 | 151 | -17.84 |
CAediting_688080 | chr9_63819626_+ | ENSG00000225190.7 | ENST00000581448 | hsa-miR-4477b | 45439603 | 45439609 | 7mer-m8 | 45439602 | 45439622 | 152 | -10.09 |
CAediting_1306324 | chr19_13836464_- | ENSG00000225190.7 | ENST00000590991 | hsa-miR-27a-3p | 45439561 | 45439567 | 7mer-m8 | 45439560 | 45439579 | 151 | -17.84 |
CAediting_688080 | chr9_63819626_+ | ENSG00000225190.7 | ENST00000590991 | hsa-miR-4477b | 45439603 | 45439609 | 7mer-m8 | 45439602 | 45439622 | 152 | -10.09 |
CAediting_846604 | chr11_93733708_- | ENSG00000225190.7 | ENST00000446609 | hsa-miR-1304-3p | 45468304 | 45468311 | 8mer-1a | 45468304 | 45468327 | 152 | -18.44 |
CAediting_86358 | chr1_109598906_+ | ENSG00000225190.7 | ENST00000430334 | hsa-miR-197-5p | 45437657 | 45437662 | 6mer | 45437656 | 45437680 | 140 | -33.06 |
CAediting_77128 | chr1_85133844_+ | ENSG00000225190.7 | ENST00000430334 | hsa-miR-4423-3p | 45436324 | 45436330 | 7mer-m8 | 45436323 | 45436343 | 140 | -12.69 |
CAediting_77128 | chr1_85133844_+ | ENSG00000225190.7 | ENST00000430334 | hsa-miR-4423-3p | 45436046 | 45436052 | 7mer-m8 | 45436045 | 45436065 | 142 | -13.62 |
CAediting_228905 | chr2_188297554_+ | ENSG00000225190.7 | ENST00000579197 | hsa-miR-561-3p | 45475219 | 45475225 | 7mer-m8 | 45475218 | 45475239 | 155 | -13.67 |
CAediting_228905 | chr2_188297554_+ | ENSG00000225190.7 | ENST00000579197 | hsa-miR-561-3p | 45468557 | 45468563 | 7mer-m8 | 45468556 | 45468577 | 145 | -13.88 |
CAediting_580943 | chr7_100356700_+ | ENSG00000225190.7 | ENST00000579197 | hsa-miR-6840-3p | 45458390 | 45458397 | 8mer-1a | 45458390 | 45458411 | 140 | -23.01 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000225190.7 | ENST00000579197 | hsa-miR-548aa | 45454059 | 45454065 | 7mer-m8 | 45454058 | 45454082 | 140 | -15.99 |
CAediting_396018 | chr5_1062918_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-4635 | 45439602 | 45439608 | 7mer-m8 | 45439601 | 45439621 | 140 | -15.06 |
CAediting_86358 | chr1_109598906_+ | ENSG00000225190.7 | ENST00000579197 | hsa-miR-197-5p | 45437657 | 45437662 | 6mer | 45437656 | 45437680 | 140 | -33.06 |
CAediting_77128 | chr1_85133844_+ | ENSG00000225190.7 | ENST00000579197 | hsa-miR-4423-3p | 45436324 | 45436330 | 7mer-m8 | 45436323 | 45436343 | 140 | -12.69 |
CAediting_77128 | chr1_85133844_+ | ENSG00000225190.7 | ENST00000579197 | hsa-miR-4423-3p | 45436046 | 45436052 | 7mer-m8 | 45436045 | 45436065 | 142 | -13.62 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000225190.7 | ENST00000581448 | hsa-miR-548aa | 45454059 | 45454065 | 7mer-m8 | 45454058 | 45454082 | 140 | -15.99 |
CAediting_396018 | chr5_1062918_- | ENSG00000225190.7 | ENST00000581448 | hsa-miR-4635 | 45439602 | 45439608 | 7mer-m8 | 45439601 | 45439621 | 140 | -15.06 |
CAediting_86358 | chr1_109598906_+ | ENSG00000225190.7 | ENST00000581448 | hsa-miR-197-5p | 45437657 | 45437662 | 6mer | 45437656 | 45437680 | 140 | -33.06 |
CAediting_86358 | chr1_109598906_+ | ENSG00000225190.7 | ENST00000591580 | hsa-miR-197-5p | 45437657 | 45437662 | 6mer | 45437656 | 45437680 | 140 | -33.06 |
CAediting_396018 | chr5_1062918_- | ENSG00000225190.7 | ENST00000590991 | hsa-miR-4635 | 45439602 | 45439608 | 7mer-m8 | 45439601 | 45439621 | 140 | -15.06 |
CAediting_228905 | chr2_188297554_+ | ENSG00000225190.7 | ENST00000446609 | hsa-miR-561-3p | 45475219 | 45475225 | 7mer-m8 | 45475218 | 45475239 | 155 | -13.67 |
CAediting_228905 | chr2_188297554_+ | ENSG00000225190.7 | ENST00000446609 | hsa-miR-561-3p | 45468557 | 45468563 | 7mer-m8 | 45468556 | 45468577 | 145 | -13.88 |
CAediting_580943 | chr7_100356700_+ | ENSG00000225190.7 | ENST00000446609 | hsa-miR-6840-3p | 45458390 | 45458397 | 8mer-1a | 45458390 | 45458411 | 140 | -23.01 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000225190.7 | ENST00000446609 | hsa-miR-548aa | 45454059 | 45454065 | 7mer-m8 | 45454058 | 45454082 | 140 | -15.99 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000225190.7 | ENST00000586084 | hsa-miR-548aa | 45477836 | 45477842 | 7mer-m8 | 45477835 | 45477858 | 142 | -11.86 |
CAediting_468389 | chr6_31355314_- | ENSG00000225190.7 | ENST00000430334 | hsa-miR-6891-5p | 45437045 | 45437051 | 7mer-m8 | 45437044 | 45437062 | 145 | -22.34 |
CAediting_468389 | chr6_31355314_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-6891-5p | 45475271 | 45475277 | 7mer-m8 | 45475270 | 45475287 | 146 | -17.83 |
CAediting_468389 | chr6_31355314_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-6891-5p | 45454026 | 45454032 | 7mer-m8 | 45454025 | 45454043 | 145 | -26.75 |
CAediting_468389 | chr6_31355314_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-6891-5p | 45437045 | 45437051 | 7mer-m8 | 45437044 | 45437062 | 145 | -22.34 |
CAediting_468389 | chr6_31355314_- | ENSG00000225190.7 | ENST00000581448 | hsa-miR-6891-5p | 45454026 | 45454032 | 7mer-m8 | 45454025 | 45454043 | 145 | -26.75 |
CAediting_468389 | chr6_31355314_- | ENSG00000225190.7 | ENST00000446609 | hsa-miR-6891-5p | 45475271 | 45475277 | 7mer-m8 | 45475270 | 45475287 | 146 | -17.83 |
CAediting_468389 | chr6_31355314_- | ENSG00000225190.7 | ENST00000446609 | hsa-miR-6891-5p | 45454026 | 45454032 | 7mer-m8 | 45454025 | 45454043 | 145 | -26.75 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1054808 | chr15_66496985_- | ENSG00000225190.7 | ENST00000430334 | hsa-miR-4512 | 45436553 | 45436559 | 7mer-m8 | 45436552 | 45436572 | 143 | -15.79 |
CAediting_1054808 | chr15_66496985_- | ENSG00000225190.7 | ENST00000430334 | hsa-miR-4512 | 45436130 | 45436136 | 7mer-m8 | 45436129 | 45436154 | 154 | -29.18 |
CAediting_1054808 | chr15_66496985_- | ENSG00000225190.7 | ENST00000430334 | hsa-miR-4512 | 45437581 | 45437587 | 7mer-m8 | 45437580 | 45437604 | 143 | -27.33 |
CAediting_1524209 | chrX_134546392_- | ENSG00000225190.7 | ENST00000430334 | hsa-miR-503-5p | 45436968 | 45436974 | 7mer-m8 | 45436967 | 45436989 | 140 | -20.17 |
CAediting_468389 | chr6_31355314_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-6891-5p | 45475527 | 45475534 | 8mer-1a | 45475527 | 45475545 | 142 | -18.22 |
CAediting_1054808 | chr15_66496985_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-4512 | 45436553 | 45436559 | 7mer-m8 | 45436552 | 45436572 | 143 | -15.79 |
CAediting_1054808 | chr15_66496985_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-4512 | 45436130 | 45436136 | 7mer-m8 | 45436129 | 45436154 | 154 | -29.18 |
CAediting_1054808 | chr15_66496985_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-4512 | 45437581 | 45437587 | 7mer-m8 | 45437580 | 45437604 | 143 | -27.33 |
CAediting_1524209 | chrX_134546392_- | ENSG00000225190.7 | ENST00000579197 | hsa-miR-503-5p | 45436968 | 45436974 | 7mer-m8 | 45436967 | 45436989 | 140 | -20.17 |
CAediting_468389 | chr6_31355314_- | ENSG00000225190.7 | ENST00000446609 | hsa-miR-6891-5p | 45475527 | 45475534 | 8mer-1a | 45475527 | 45475545 | 142 | -18.22 |
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The effects of the RNA editing to the stability of the RNA structures for PLEKHM1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for PLEKHM1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LUSC | CAediting_1205374 | chr17_45467226_- | 0.00183587805697084 | 0.329413638738522 | . | . | . | . |
LUSC | CAediting_1205376 | chr17_45467598_- | 2.49036114179779e-06 | 0.488024806170023 | . | . | . | . |
HNSC | CAediting_1205376 | chr17_45467598_- | 0.000648150670982642 | 0.392551972328468 | . | . | . | . |
LUSC | CAediting_1205378 | chr17_45467613_- | 0.00555163494272647 | 0.311184946078909 | . | . | . | . |
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Relation with cancer stages for PLEKHM1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for PLEKHM1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for PLEKHM1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PLEKHM1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
PLEKHM1 | C1969093 | Osteopetrosis, Autosomal Recessive 6 | 2 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
PLEKHM1 | C4748197 | OSTEOPETROSIS, AUTOSOMAL DOMINANT 3 | 2 | GENOMICS_ENGLAND;UNIPROT |
PLEKHM1 | C0432261 | Osteopetrosis - intermediate type | 1 | ORPHANET |