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Editing gene: UTP14C (CAeditome ID:9724)

Gene summary for UTP14C

Gene summary

Gene information	Gene symbol	UTP14C
	Gene ID	9724
	Gene name	UTP14C small subunit processome component
	Synonyms	2700066J21Rik\|KIAA0266\|UTP14B
	Cytomap	13q14.3
	Type of gene	protein-coding
	Description	U3 small nucleolar RNA-associated protein 14 homolog CUTP14, U3 small nucleolar ribonucleoprotein, homolog CUTP14, small subunit processome component homolog C
	Modification date	20210518
	UniProtAcc	Q5TAP6
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
UTP14C	GO:0005730	U3 small nucleolar RNA-associated protein 14 homolog C	0000052
UTP14C	GO:0005829	U3 small nucleolar RNA-associated protein 14 homolog C	0000052

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RNA A-to-I events for UTP14C

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000253797.2

RNA A-to-I editing events in Cancer.

CAediting_965832(52030403, +), CAediting_965833(52030744, +), CAediting_965834(52031967, +), CAediting_965835(52031984, +), CAediting_965836(52032006, +), CAediting_965837(52032036, +), CAediting_965838(52032044, +), CAediting_965839(52032059, +), CAediting_965840(52032062, +), CAediting_965841(52032075, +), CAediting_965842(52032091, +), CAediting_965843(52032101, +), CAediting_965844(52032111, +), CAediting_965845(52032118, +), CAediting_965846(52032124, +), CAediting_965847(52032128, +), CAediting_965848(52032150, +), CAediting_965849(52032156, +), CAediting_965850(52032171, +), CAediting_965851(52032211, +), CAediting_965852(52032243, +), CAediting_965853(52032244, +), CAediting_965854(52032875, +), CAediting_965855(52032898, +),

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RNA editing positional annotations for UTP14C using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_965832	chr13_52030403_+	exonic
CAediting_965833	chr13_52030744_+	exonic
CAediting_965834	chr13_52031967_+	UTR3
CAediting_965835	chr13_52031984_+	UTR3
CAediting_965836	chr13_52032006_+	UTR3
CAediting_965837	chr13_52032036_+	UTR3
CAediting_965838	chr13_52032044_+	UTR3
CAediting_965839	chr13_52032059_+	UTR3
CAediting_965840	chr13_52032062_+	UTR3
CAediting_965841	chr13_52032075_+	UTR3
CAediting_965842	chr13_52032091_+	UTR3
CAediting_965843	chr13_52032101_+	UTR3
CAediting_965844	chr13_52032111_+	UTR3
CAediting_965845	chr13_52032118_+	UTR3
CAediting_965846	chr13_52032124_+	UTR3
CAediting_965847	chr13_52032128_+	UTR3
CAediting_965848	chr13_52032150_+	UTR3
CAediting_965849	chr13_52032156_+	UTR3
CAediting_965850	chr13_52032171_+	UTR3
CAediting_965851	chr13_52032211_+	UTR3
CAediting_965852	chr13_52032243_+	UTR3
CAediting_965853	chr13_52032244_+	UTR3
CAediting_965854	chr13_52032875_+	UTR3
CAediting_965855	chr13_52032898_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_965834	chr13_52031967_+	SINE	Alu	AluSq4
CAediting_965835	chr13_52031984_+	SINE	Alu	AluSq4
CAediting_965836	chr13_52032006_+	SINE	Alu	AluSq4
CAediting_965837	chr13_52032036_+	SINE	Alu	AluSq4
CAediting_965838	chr13_52032044_+	SINE	Alu	AluSq4
CAediting_965839	chr13_52032059_+	SINE	Alu	AluSq4
CAediting_965840	chr13_52032062_+	SINE	Alu	AluSq4
CAediting_965841	chr13_52032075_+	SINE	Alu	AluSq4
CAediting_965842	chr13_52032091_+	SINE	Alu	AluSq4
CAediting_965843	chr13_52032101_+	SINE	Alu	AluSq4
CAediting_965844	chr13_52032111_+	SINE	Alu	AluSq4
CAediting_965845	chr13_52032118_+	SINE	Alu	AluSq4
CAediting_965846	chr13_52032124_+	SINE	Alu	AluSq4
CAediting_965847	chr13_52032128_+	SINE	Alu	AluSq4
CAediting_965848	chr13_52032150_+	SINE	Alu	AluSq4
CAediting_965849	chr13_52032156_+	SINE	Alu	AluSq4
CAediting_965850	chr13_52032171_+	SINE	Alu	AluSq4
CAediting_965851	chr13_52032211_+	SINE	Alu	AluSq4
CAediting_965852	chr13_52032243_+	SINE	Alu	AluSq4
CAediting_965853	chr13_52032244_+	SINE	Alu	AluSq4
CAediting_965854	chr13_52032875_+	SINE	MIR	MIR3
CAediting_965855	chr13_52032898_+	SINE	MIR	MIR3

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RNA A-to-I editing events in the alternative splicing sites for UTP14C

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000253797.2.UTP14C.

Correlation between RNA A-to-I editing and PSI for ENSG00000253797.2.UTP14C.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for UTP14C

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for UTP14C

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for UTP14C

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_965855	chr13_52032898_+	ENSG00000253797.2	ENST00000521776	hsa-miR-589-3p	52032896	52032903	8mer-1a	52032882	52032903	151.00	-18.33
CAediting_965834	chr13_52031967_+	ENSG00000253797.2	ENST00000521776	hsa-miR-513a-5p	52031961	52031967	7mer-m8	52031948	52031968	147.00	-18.35
CAediting_965834	chr13_52031967_+	ENSG00000253797.2	ENST00000521776	hsa-miR-513a-5p	52031961	52031967	7mer-m8	52031948	52031968	147.00	-18.35
CAediting_965834	chr13_52031967_+	ENSG00000253797.2	ENST00000521776	hsa-miR-638	52031966	52031972	7mer-1a	52031948	52031972	155.00	-29.11
CAediting_965835	chr13_52031984_+	ENSG00000253797.2	ENST00000521776	hsa-miR-10392-3p	52031982	52031989	8mer-1a	52031965	52031989	144.00	-22.69
CAediting_965838	chr13_52032044_+	ENSG00000253797.2	ENST00000521776	hsa-miR-3158-3p	52032041	52032047	7mer-m8	52032023	52032048	151.00	-22.35
CAediting_965838	chr13_52032044_+	ENSG00000253797.2	ENST00000521776	hsa-miR-3158-3p	52032041	52032047	7mer-m8	52032023	52032048	151.00	-22.35
CAediting_965838	chr13_52032044_+	ENSG00000253797.2	ENST00000521776	hsa-miR-412-3p	52032037	52032043	7mer-m8	52032017	52032044	146.00	-16.13
CAediting_965838	chr13_52032044_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6754-3p	52032037	52032043	7mer-m8	52032020	52032044	146.00	-16.17
CAediting_965842	chr13_52032091_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4258	52032086	52032092	7mer-m8	52032075	52032093	153.00	-26.20
CAediting_965842	chr13_52032091_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4707-3p	52032087	52032094	8mer-1a	52032071	52032094	161.00	-30.59
CAediting_965843	chr13_52032101_+	ENSG00000253797.2	ENST00000521776	hsa-miR-513a-5p	52032095	52032101	7mer-m8	52032085	52032102	144.00	-17.88
CAediting_965843	chr13_52032101_+	ENSG00000253797.2	ENST00000521776	hsa-miR-513a-5p	52032095	52032101	7mer-m8	52032085	52032102	144.00	-17.88
CAediting_965843	chr13_52032101_+	ENSG00000253797.2	ENST00000521776	hsa-miR-638	52032100	52032106	7mer-1a	52032082	52032106	151.00	-29.11
CAediting_965848	chr13_52032150_+	ENSG00000253797.2	ENST00000521776	hsa-miR-18a-3p	52032148	52032155	8mer-1a	52032132	52032155	143.00	-17.53
CAediting_965848	chr13_52032150_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4290	52032146	52032153	8mer-1a	52032133	52032153	147.00	-17.45
CAediting_965849	chr13_52032156_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6747-3p	52032149	52032155	7mer-m8	52032136	52032156	155.00	-23.56
CAediting_965849	chr13_52032156_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6752-3p	52032150	52032156	7mer-m8	52032136	52032157	144.00	-20.38
CAediting_965849	chr13_52032156_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6801-3p	52032151	52032157	7mer-m8	52032139	52032158	152.00	-22.13
CAediting_965849	chr13_52032156_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6810-3p	52032151	52032157	7mer-m8	52032136	52032158	155.00	-21.52
CAediting_965850	chr13_52032171_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4638-5p	52032166	52032173	8mer-1a	52032154	52032173	146.00	-20.28
CAediting_965851	chr13_52032211_+	ENSG00000253797.2	ENST00000521776	hsa-miR-1251-3p	52032205	52032211	7mer-m8	52032190	52032212	150.00	-15.68
CAediting_965851	chr13_52032211_+	ENSG00000253797.2	ENST00000521776	hsa-miR-27b-5p	52032208	52032213	6mer	52032193	52032214	140.00	-15.83
CAediting_965851	chr13_52032211_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6874-5p	52032209	52032215	7mer-m8	52032194	52032216	140.00	-17.62
CAediting_965854	chr13_52032875_+	ENSG00000253797.2	ENST00000521776	hsa-miR-145-3p	52032873	52032880	8mer-1a	52032856	52032880	151.00	-16.79
CAediting_965854	chr13_52032875_+	ENSG00000253797.2	ENST00000521776	hsa-miR-205-5p	52032869	52032876	8mer-1a	52032855	52032876	143.00	-14.09
CAediting_965844	chr13_52032111_+	ENSG00000253797.2	ENST00000521776	hsa-miR-1207-3p	52032104	52032110	7mer-m8	52032094	52032111	140.00	-12.56
CAediting_965844	chr13_52032111_+	ENSG00000253797.2	ENST00000521776	hsa-miR-646	52032106	52032112	7mer-m8	52032095	52032113	145.00	-16.24
CAediting_965846	chr13_52032124_+	ENSG00000253797.2	ENST00000521776	hsa-miR-18a-3p	52032123	52032128	6mer	52032109	52032129	142.00	-24.06
CAediting_965846	chr13_52032124_+	ENSG00000253797.2	ENST00000521776	hsa-miR-1913	52032122	52032128	7mer-m8	52032102	52032129	145.00	-26.82
CAediting_965853	chr13_52032244_+	ENSG00000253797.2	ENST00000521776	hsa-miR-130a-5p	52032237	52032244	8mer-1a	52032223	52032244	148.00	-8.65
CAediting_965853	chr13_52032244_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4753-3p	52032238	52032245	8mer-1a	52032228	52032245	146.00	-12.35
CAediting_965853	chr13_52032244_+	ENSG00000253797.2	ENST00000521776	hsa-miR-5571-5p	52032241	52032248	8mer-1a	52032228	52032248	140.00	-8.91
CAediting_965853	chr13_52032244_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6809-3p	52032239	52032245	7mer-m8	52032227	52032246	158.00	-12.14

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_965834	chr13_52031967_+	ENSG00000253797.2	ENST00000521776	hsa-miR-10399-5p	52031962	52031968	7mer-m8	52031952	52031969	147	-10.51
CAediting_965843	chr13_52032101_+	ENSG00000253797.2	ENST00000521776	hsa-miR-10399-5p	52032096	52032102	7mer-m8	52032084	52032103	149	-12.94
CAediting_965845	chr13_52032118_+	ENSG00000253797.2	ENST00000521776	hsa-miR-150-5p	52032112	52032119	8mer-1a	52032098	52032119	140	-13.83
CAediting_965835	chr13_52031984_+	ENSG00000253797.2	ENST00000521776	hsa-miR-150-5p	52031978	52031984	7mer-m8	52031964	52031985	140	-15.8
CAediting_965847	chr13_52032128_+	ENSG00000253797.2	ENST00000521776	hsa-miR-1976	52032125	52032132	8mer-1a	52032113	52032132	146	-20.85
CAediting_965851	chr13_52032211_+	ENSG00000253797.2	ENST00000521776	hsa-miR-19b-1-5p	52032205	52032211	7mer-m8	52032193	52032212	148	-18.03
CAediting_965851	chr13_52032211_+	ENSG00000253797.2	ENST00000521776	hsa-miR-19b-2-5p	52032205	52032211	7mer-m8	52032192	52032212	146	-13.03
CAediting_965846	chr13_52032124_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4264	52032118	52032124	7mer-m8	52032109	52032125	140	-11.61
CAediting_965848	chr13_52032150_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4297	52032146	52032153	8mer-1a	52032138	52032153	149	-16.42
CAediting_965845	chr13_52032118_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4713-5p	52032113	52032119	7mer-m8	52032098	52032120	147	-12.33
CAediting_965842	chr13_52032091_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4715-3p	52032084	52032090	7mer-m8	52032071	52032091	146	-19.03
CAediting_965837	chr13_52032036_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4716-5p	52032032	52032038	7mer-m8	52032018	52032039	140	-10.01
CAediting_965842	chr13_52032091_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4722-3p	52032086	52032092	7mer-m8	52032073	52032093	154	-25.29
CAediting_965841	chr13_52032075_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4735-5p	52032069	52032075	7mer-m8	52032055	52032076	140	-4.28
CAediting_965842	chr13_52032091_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4763-5p	52032087	52032094	8mer-1a	52032071	52032094	153	-24.87
CAediting_965841	chr13_52032075_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4775	52032068	52032074	7mer-m8	52032053	52032075	153	-7.86
CAediting_965849	chr13_52032156_+	ENSG00000253797.2	ENST00000521776	hsa-miR-5001-3p	52032149	52032155	7mer-m8	52032138	52032156	152	-20.97
CAediting_965842	chr13_52032091_+	ENSG00000253797.2	ENST00000521776	hsa-miR-550a-3-5p	52032089	52032095	7mer-m8	52032077	52032096	140	-16.39
CAediting_965842	chr13_52032091_+	ENSG00000253797.2	ENST00000521776	hsa-miR-550a-5p	52032089	52032095	7mer-m8	52032074	52032096	140	-21.57
CAediting_965842	chr13_52032091_+	ENSG00000253797.2	ENST00000521776	hsa-miR-550a-5p	52032089	52032095	7mer-m8	52032074	52032096	140	-21.57
CAediting_965848	chr13_52032150_+	ENSG00000253797.2	ENST00000521776	hsa-miR-5581-5p	52032146	52032153	8mer-1a	52032128	52032153	152	-18.22
CAediting_965844	chr13_52032111_+	ENSG00000253797.2	ENST00000521776	hsa-miR-562	52032107	52032113	7mer-m8	52032095	52032114	150	-12.74
CAediting_965844	chr13_52032111_+	ENSG00000253797.2	ENST00000521776	hsa-miR-5697	52032108	52032114	7mer-m8	52032093	52032115	149	-18.33
CAediting_965834	chr13_52031967_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6504-3p	52031962	52031968	7mer-m8	52031950	52031969	140	-7.92
CAediting_965843	chr13_52032101_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6504-3p	52032096	52032102	7mer-m8	52032082	52032103	145	-13.3
CAediting_965842	chr13_52032091_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6727-3p	52032086	52032092	7mer-m8	52032074	52032093	153	-26.66
CAediting_965847	chr13_52032128_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6747-3p	52032123	52032130	8mer-1a	52032110	52032130	152	-23.46
CAediting_965835	chr13_52031984_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6778-3p	52031980	52031986	7mer-m8	52031967	52031987	143	-13.97
CAediting_965838	chr13_52032044_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6823-5p	52032042	52032048	7mer-m8	52032029	52032049	143	-18.06
CAediting_965842	chr13_52032091_+	ENSG00000253797.2	ENST00000521776	hsa-miR-6894-3p	52032088	52032094	7mer-m8	52032075	52032095	150	-25.66

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000253797.2	ENST00000521776	hsa-miR-624-3p	52032043	52032049	7mer-m8	52032030	52032050	152	-13.11
CAediting_117844	chr1_162342605_+	ENSG00000253797.2	ENST00000521776	hsa-miR-556-3p	52032197	52032204	8mer-1a	52032184	52032204	141	-11.17
CAediting_442554	chr5_154685830_+	ENSG00000253797.2	ENST00000521776	hsa-miR-1303	52032629	52032635	7mer-m8	52032615	52032636	142	-12.68

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000253797.2	ENST00000521776	hsa-miR-320e	52032594	52032601	8mer-1a	52032579	52032601	146	-14.64
CAediting_688081	chr9_63819627_+	ENSG00000253797.2	ENST00000521776	hsa-miR-4477b	52031364	52031371	8mer-1a	52031347	52031371	149	-9.52
CAediting_1351755	chr19_40282625_-	ENSG00000253797.2	ENST00000521776	hsa-miR-641	52032282	52032288	7mer-m8	52032262	52032289	155	-14.52

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for UTP14C

- RNA A-to-I editing in mRNA.
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ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for UTP14C

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_965855	chr13_52032898_+	6.58622895048489e-06	0.462194592605679	.	.	.	.

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Relation with cancer stages for UTP14C

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for UTP14C

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for UTP14C

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for UTP14C

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene