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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: HERPUD1 (CAeditome ID:9709) |
Gene summary for HERPUD1 |
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Gene information | Gene symbol | HERPUD1 | Gene ID | 9709 |
Gene name | homocysteine inducible ER protein with ubiquitin like domain 1 | |
Synonyms | HERP|Mif1|SUP | |
Cytomap | 16q13 | |
Type of gene | protein-coding | |
Description | homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinMMS-induciblehomocysteine-inducible endoplasmic reticulum stress-inducible ubiquitin-like domain member 1 proteinhomocysteine-inducible, endoplasmic reticulum | |
Modification date | 20210518 | |
UniProtAcc | Q15011 | |
Context | - 28430789(MiR-9-3p augments apoptosis induced by H2O2 through down regulation of Herpud1 in glioma) |
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Gene | GO ID | GO term | PubMed ID |
HERPUD1 | GO:0032469 | Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein | 15102845 |
HERPUD1 | GO:0032469 | Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein | 22045699 |
HERPUD1 | GO:1902236 | Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein | 15102845 |
HERPUD1 | GO:1903071 | Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein | 22045699 |
HERPUD1 | GO:0005783 | Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein | 15102845 |
HERPUD1 | GO:0005783 | Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein | 19788048 |
HERPUD1 | GO:0005783 | Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein | 22045699 |
HERPUD1 | GO:0005789 | Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein | 10922362 |
HERPUD1 | GO:1990037 | Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein | 19788048 |
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RNA A-to-I events for HERPUD1 |
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CAediting_1117099(56938442, +), CAediting_1117100(56940339, +), CAediting_1117101(56940381, +), CAediting_1117102(56940400, +), CAediting_1117103(56940406, +), CAediting_1117104(56940446, +), CAediting_1117105(56940448, +), CAediting_1117106(56940472, +), CAediting_1117107(56940473, +), CAediting_1117108(56940479, +), CAediting_1117109(56940481, +), CAediting_1117110(56940487, +), CAediting_1117111(56940490, +), CAediting_1117112(56940516, +), CAediting_1117113(56940540, +), CAediting_1117114(56940541, +), CAediting_1117115(56940553, +), CAediting_1117116(56940566, +), CAediting_1117117(56940567, +), CAediting_1117118(56940568, +), CAediting_1117119(56940580, +), CAediting_1117120(56940698, +), CAediting_1117121(56940700, +), CAediting_1117122(56940706, +), CAediting_1117123(56940707, +), CAediting_1117124(56940733, +), CAediting_1117125(56940742, +), CAediting_1117126(56940744, +), CAediting_1117127(56940747, +), CAediting_1117128(56940784, +), CAediting_1117129(56940786, +), CAediting_1117130(56940797, +), CAediting_1117131(56940800, +), CAediting_1117132(56940801, +), CAediting_1117133(56940803, +), CAediting_1117134(56940810, +), CAediting_1117135(56940811, +), CAediting_1117136(56940812, +), CAediting_1117137(56940813, +), CAediting_1117138(56940816, +), CAediting_1117139(56940843, +), CAediting_1117140(56940864, +), CAediting_1117141(56940870, +), CAediting_1117142(56940878, +), CAediting_1117143(56940890, +), CAediting_1117144(56940923, +), CAediting_1117145(56940940, +), CAediting_1117146(56940945, +), CAediting_1117147(56940946, +), CAediting_1117148(56940964, +), CAediting_1117149(56941844, +), CAediting_1117150(56941851, +), CAediting_1117151(56941954, +), CAediting_1117152(56942693, +), CAediting_1117153(56942754, +), CAediting_1117154(56942773, +), CAediting_1117155(56942827, +), CAediting_1117156(56944545, +), CAediting_1117157(56944583, +), CAediting_1117158(56944605, +), CAediting_1117159(56944632, +), CAediting_1117160(56944641, +), CAediting_1117161(56944647, +), CAediting_1117162(56944650, +), CAediting_1117163(56944730, +), CAediting_1117164(56944742, +), CAediting_1117165(56944755, +), |
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RNA editing positional annotations for HERPUD1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1117099 | chr16_56938442_+ | ncRNA_intronic |
CAediting_1117100 | chr16_56940339_+ | ncRNA_exonic |
CAediting_1117101 | chr16_56940381_+ | ncRNA_exonic |
CAediting_1117102 | chr16_56940400_+ | ncRNA_exonic |
CAediting_1117103 | chr16_56940406_+ | ncRNA_intronic |
CAediting_1117104 | chr16_56940446_+ | ncRNA_intronic |
CAediting_1117105 | chr16_56940448_+ | ncRNA_intronic |
CAediting_1117106 | chr16_56940472_+ | ncRNA_intronic |
CAediting_1117107 | chr16_56940473_+ | ncRNA_intronic |
CAediting_1117108 | chr16_56940479_+ | ncRNA_intronic |
CAediting_1117109 | chr16_56940481_+ | ncRNA_intronic |
CAediting_1117110 | chr16_56940487_+ | ncRNA_intronic |
CAediting_1117111 | chr16_56940490_+ | ncRNA_intronic |
CAediting_1117112 | chr16_56940516_+ | ncRNA_intronic |
CAediting_1117113 | chr16_56940540_+ | ncRNA_intronic |
CAediting_1117114 | chr16_56940541_+ | ncRNA_intronic |
CAediting_1117115 | chr16_56940553_+ | ncRNA_intronic |
CAediting_1117116 | chr16_56940566_+ | ncRNA_intronic |
CAediting_1117117 | chr16_56940567_+ | ncRNA_intronic |
CAediting_1117118 | chr16_56940568_+ | ncRNA_intronic |
CAediting_1117119 | chr16_56940580_+ | ncRNA_intronic |
CAediting_1117120 | chr16_56940698_+ | ncRNA_intronic |
CAediting_1117121 | chr16_56940700_+ | ncRNA_intronic |
CAediting_1117122 | chr16_56940706_+ | ncRNA_intronic |
CAediting_1117123 | chr16_56940707_+ | ncRNA_intronic |
CAediting_1117124 | chr16_56940733_+ | ncRNA_intronic |
CAediting_1117125 | chr16_56940742_+ | ncRNA_intronic |
CAediting_1117126 | chr16_56940744_+ | ncRNA_intronic |
CAediting_1117127 | chr16_56940747_+ | ncRNA_intronic |
CAediting_1117128 | chr16_56940784_+ | ncRNA_intronic |
CAediting_1117129 | chr16_56940786_+ | ncRNA_intronic |
CAediting_1117130 | chr16_56940797_+ | ncRNA_intronic |
CAediting_1117131 | chr16_56940800_+ | ncRNA_intronic |
CAediting_1117132 | chr16_56940801_+ | ncRNA_intronic |
CAediting_1117133 | chr16_56940803_+ | ncRNA_intronic |
CAediting_1117134 | chr16_56940810_+ | ncRNA_intronic |
CAediting_1117135 | chr16_56940811_+ | ncRNA_intronic |
CAediting_1117136 | chr16_56940812_+ | ncRNA_intronic |
CAediting_1117137 | chr16_56940813_+ | ncRNA_intronic |
CAediting_1117138 | chr16_56940816_+ | ncRNA_intronic |
CAediting_1117139 | chr16_56940843_+ | ncRNA_intronic |
CAediting_1117140 | chr16_56940864_+ | ncRNA_splicing |
CAediting_1117141 | chr16_56940870_+ | ncRNA_exonic |
CAediting_1117142 | chr16_56940878_+ | ncRNA_exonic |
CAediting_1117143 | chr16_56940890_+ | ncRNA_exonic |
CAediting_1117144 | chr16_56940923_+ | ncRNA_exonic |
CAediting_1117145 | chr16_56940940_+ | ncRNA_exonic |
CAediting_1117146 | chr16_56940945_+ | ncRNA_exonic |
CAediting_1117147 | chr16_56940946_+ | ncRNA_exonic |
CAediting_1117148 | chr16_56940964_+ | ncRNA_exonic |
CAediting_1117149 | chr16_56941844_+ | ncRNA_intronic |
CAediting_1117150 | chr16_56941851_+ | ncRNA_intronic |
CAediting_1117151 | chr16_56941954_+ | ncRNA_intronic |
CAediting_1117152 | chr16_56942693_+ | ncRNA_intronic |
CAediting_1117153 | chr16_56942754_+ | ncRNA_intronic |
CAediting_1117154 | chr16_56942773_+ | ncRNA_intronic |
CAediting_1117155 | chr16_56942827_+ | ncRNA_intronic |
CAediting_1117156 | chr16_56944545_+ | UTR3 |
CAediting_1117157 | chr16_56944583_+ | UTR3 |
CAediting_1117158 | chr16_56944605_+ | UTR3 |
CAediting_1117159 | chr16_56944632_+ | UTR3 |
CAediting_1117160 | chr16_56944641_+ | UTR3 |
CAediting_1117161 | chr16_56944647_+ | UTR3 |
CAediting_1117162 | chr16_56944650_+ | UTR3 |
CAediting_1117163 | chr16_56944730_+ | UTR3 |
CAediting_1117164 | chr16_56944742_+ | UTR3 |
CAediting_1117165 | chr16_56944755_+ | UTR3 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1117099 | chr16_56938442_+ | SINE | Alu | AluY |
CAediting_1117100 | chr16_56940339_+ | SINE | Alu | AluSx1 |
CAediting_1117101 | chr16_56940381_+ | SINE | Alu | AluSx1 |
CAediting_1117102 | chr16_56940400_+ | SINE | Alu | AluSx1 |
CAediting_1117103 | chr16_56940406_+ | SINE | Alu | AluSx1 |
CAediting_1117104 | chr16_56940446_+ | SINE | Alu | AluSx1 |
CAediting_1117105 | chr16_56940448_+ | SINE | Alu | AluSx1 |
CAediting_1117106 | chr16_56940472_+ | SINE | Alu | AluSx1 |
CAediting_1117107 | chr16_56940473_+ | SINE | Alu | AluSx1 |
CAediting_1117108 | chr16_56940479_+ | SINE | Alu | AluSx1 |
CAediting_1117109 | chr16_56940481_+ | SINE | Alu | AluSx1 |
CAediting_1117110 | chr16_56940487_+ | SINE | Alu | AluSx1 |
CAediting_1117111 | chr16_56940490_+ | SINE | Alu | AluSx1 |
CAediting_1117112 | chr16_56940516_+ | SINE | Alu | AluSx1 |
CAediting_1117113 | chr16_56940540_+ | SINE | Alu | AluSx1 |
CAediting_1117114 | chr16_56940541_+ | SINE | Alu | AluSx1 |
CAediting_1117115 | chr16_56940553_+ | SINE | Alu | AluSx1 |
CAediting_1117116 | chr16_56940566_+ | SINE | Alu | AluSx1 |
CAediting_1117117 | chr16_56940567_+ | SINE | Alu | AluSx1 |
CAediting_1117118 | chr16_56940568_+ | SINE | Alu | AluSx1 |
CAediting_1117119 | chr16_56940580_+ | SINE | Alu | AluSx1 |
CAediting_1117120 | chr16_56940698_+ | SINE | Alu | AluSx |
CAediting_1117121 | chr16_56940700_+ | SINE | Alu | AluSx |
CAediting_1117122 | chr16_56940706_+ | SINE | Alu | AluSx |
CAediting_1117123 | chr16_56940707_+ | SINE | Alu | AluSx |
CAediting_1117124 | chr16_56940733_+ | SINE | Alu | AluSx |
CAediting_1117125 | chr16_56940742_+ | SINE | Alu | AluSx |
CAediting_1117126 | chr16_56940744_+ | SINE | Alu | AluSx |
CAediting_1117127 | chr16_56940747_+ | SINE | Alu | AluSx |
CAediting_1117128 | chr16_56940784_+ | SINE | Alu | AluSx |
CAediting_1117129 | chr16_56940786_+ | SINE | Alu | AluSx |
CAediting_1117130 | chr16_56940797_+ | SINE | Alu | AluSx |
CAediting_1117131 | chr16_56940800_+ | SINE | Alu | AluSx |
CAediting_1117132 | chr16_56940801_+ | SINE | Alu | AluSx |
CAediting_1117133 | chr16_56940803_+ | SINE | Alu | AluSx |
CAediting_1117134 | chr16_56940810_+ | SINE | Alu | AluSx |
CAediting_1117135 | chr16_56940811_+ | SINE | Alu | AluSx |
CAediting_1117136 | chr16_56940812_+ | SINE | Alu | AluSx |
CAediting_1117137 | chr16_56940813_+ | SINE | Alu | AluSx |
CAediting_1117138 | chr16_56940816_+ | SINE | Alu | AluSx |
CAediting_1117139 | chr16_56940843_+ | SINE | Alu | AluSx |
CAediting_1117140 | chr16_56940864_+ | SINE | Alu | AluSx |
CAediting_1117141 | chr16_56940870_+ | SINE | Alu | AluSx |
CAediting_1117142 | chr16_56940878_+ | SINE | Alu | AluSx |
CAediting_1117143 | chr16_56940890_+ | SINE | Alu | AluSx |
CAediting_1117144 | chr16_56940923_+ | SINE | Alu | AluSx |
CAediting_1117145 | chr16_56940940_+ | SINE | Alu | AluSx |
CAediting_1117146 | chr16_56940945_+ | SINE | Alu | AluSx |
CAediting_1117147 | chr16_56940946_+ | SINE | Alu | AluSx |
CAediting_1117148 | chr16_56940964_+ | SINE | Alu | AluSx |
CAediting_1117151 | chr16_56941954_+ | LINE | L2 | L2c |
CAediting_1117152 | chr16_56942693_+ | SINE | Alu | AluSx |
CAediting_1117153 | chr16_56942754_+ | SINE | Alu | AluSx |
CAediting_1117154 | chr16_56942773_+ | SINE | Alu | AluSx |
CAediting_1117155 | chr16_56942827_+ | SINE | Alu | AluSx |
CAediting_1117156 | chr16_56944545_+ | SINE | Alu | AluSx1 |
CAediting_1117157 | chr16_56944583_+ | SINE | Alu | AluSx1 |
CAediting_1117158 | chr16_56944605_+ | SINE | Alu | AluSx1 |
CAediting_1117159 | chr16_56944632_+ | SINE | Alu | AluSx1 |
CAediting_1117160 | chr16_56944641_+ | SINE | Alu | AluSx1 |
CAediting_1117161 | chr16_56944647_+ | SINE | Alu | AluSx1 |
CAediting_1117162 | chr16_56944650_+ | SINE | Alu | AluSx1 |
CAediting_1117163 | chr16_56944730_+ | SINE | Alu | AluSx1 |
CAediting_1117164 | chr16_56944742_+ | SINE | Alu | AluSx1 |
CAediting_1117165 | chr16_56944755_+ | SINE | Alu | AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for HERPUD1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HERPUD1 |
![]() * The grey color means N/A. |
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LUAD.CAediting_1117121.ENSG00000051108.HERPUD1.png ![]() |
LUSC.CAediting_1117108.ENSG00000051108.HERPUD1.png ![]() |
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Protein coding region RNA A-to-I editings for HERPUD1 |
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The effects of the RNA editing to the miRNA binding sites for HERPUD1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688080 | chr9_63819626_+ | ENSG00000051108.13 | ENST00000565966 | hsa-miR-4477b | 56936743 | 56936749 | 7mer-m8 | 56936728 | 56936750 | 147 | -13.3 |
CAediting_688080 | chr9_63819626_+ | ENSG00000051108.13 | ENST00000565966 | hsa-miR-4477b | 56940032 | 56940038 | 7mer-m8 | 56940015 | 56940039 | 162 | -18.66 |
CAediting_1351755 | chr19_40282625_- | ENSG00000051108.13 | ENST00000565966 | hsa-miR-641 | 56935287 | 56935294 | 8mer-1a | 56935273 | 56935294 | 154 | -14.38 |
CAediting_396018 | chr5_1062918_- | ENSG00000051108.13 | ENST00000565966 | hsa-miR-4635 | 56936744 | 56936750 | 7mer-m8 | 56936731 | 56936751 | 140 | -14.36 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000051108.13 | ENST00000565966 | hsa-miR-548aa | 56939275 | 56939281 | 7mer-m8 | 56939256 | 56939282 | 144 | -14.63 |
CAediting_396018 | chr5_1062918_- | ENSG00000051108.13 | ENST00000565966 | hsa-miR-4635 | 56940033 | 56940039 | 7mer-m8 | 56940019 | 56940040 | 145 | -16.16 |
CAediting_1054808 | chr15_66496985_- | ENSG00000051108.13 | ENST00000568358 | hsa-miR-4512 | 56943265 | 56943271 | 7mer-m8 | 56943252 | 56943272 | 145 | -17.11 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for HERPUD1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for HERPUD1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
KIRC | CAediting_1117104 | chr16_56940446_+ | . | . | . | . | 0.000537376689189975 | 0.444202362122165 |
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Relation with cancer stages for HERPUD1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_1117103 | chr16_56940406_+ | 0.0252207565334411 | 0.254983255636932 |
KIRC | pathologic_stage | CAediting_1117108 | chr16_56940479_+ | 0.000717330286191564 | 0.352009953269261 |
KIRC | pathologic_stage | CAediting_1117112 | chr16_56940516_+ | 0.0102938810741206 | 0.316173424191003 |
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Relation with survival for HERPUD1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for HERPUD1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for HERPUD1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
HERPUD1 | C0001973 | Alcoholic Intoxication, Chronic | 1 | PSYGENET |
HERPUD1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
HERPUD1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |