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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: SOCS5 (CAeditome ID:9655) |
Gene summary for SOCS5 |
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Gene information | Gene symbol | SOCS5 | Gene ID | 9655 |
Gene name | suppressor of cytokine signaling 5 | |
Synonyms | CIS6|CISH6|Cish5|SOCS-5 | |
Cytomap | 2p21 | |
Type of gene | protein-coding | |
Description | suppressor of cytokine signaling 5CIS-6cytokine-inducible SH2 protein 6cytokine-inducible SH2-containing protein 5 | |
Modification date | 20210518 | |
UniProtAcc | O75159 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
SOCS5 | GO:0007175 | Suppressor of cytokine signaling 5 | 15590694 |
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RNA A-to-I events for SOCS5 |
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CAediting_177465(46710608, +), CAediting_177466(46710616, +), CAediting_177467(46710624, +), CAediting_177468(46710625, +), CAediting_177469(46710626, +), CAediting_177470(46713174, +), CAediting_177471(46713205, +), CAediting_177472(46713206, +), CAediting_177473(46715159, +), CAediting_177474(46715224, +), CAediting_177475(46715228, +), CAediting_177476(46715232, +), CAediting_177477(46715250, +), CAediting_177478(46715251, +), CAediting_177479(46715268, +), CAediting_177480(46715273, +), CAediting_177481(46715292, +), CAediting_177482(46716693, +), CAediting_177483(46728583, +), CAediting_177484(46728656, +), CAediting_177485(46728657, +), CAediting_177486(46728736, +), CAediting_177487(46730346, +), CAediting_177488(46733357, +), CAediting_177489(46733366, +), CAediting_177490(46733427, +), CAediting_177491(46733470, +), CAediting_177492(46733475, +), CAediting_177493(46733476, +), CAediting_177494(46733488, +), CAediting_177495(46733490, +), CAediting_177496(46733498, +), CAediting_177497(46741378, +), CAediting_177498(46747362, +), CAediting_177499(46748439, +), CAediting_177500(46757746, +), |
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RNA editing positional annotations for SOCS5 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_177465 | chr2_46710608_+ | intronic |
CAediting_177466 | chr2_46710616_+ | intronic |
CAediting_177467 | chr2_46710624_+ | intronic |
CAediting_177468 | chr2_46710625_+ | intronic |
CAediting_177469 | chr2_46710626_+ | intronic |
CAediting_177470 | chr2_46713174_+ | intronic |
CAediting_177471 | chr2_46713205_+ | intronic |
CAediting_177472 | chr2_46713206_+ | intronic |
CAediting_177473 | chr2_46715159_+ | intronic |
CAediting_177474 | chr2_46715224_+ | intronic |
CAediting_177475 | chr2_46715228_+ | intronic |
CAediting_177476 | chr2_46715232_+ | intronic |
CAediting_177477 | chr2_46715250_+ | intronic |
CAediting_177478 | chr2_46715251_+ | intronic |
CAediting_177479 | chr2_46715268_+ | intronic |
CAediting_177480 | chr2_46715273_+ | intronic |
CAediting_177481 | chr2_46715292_+ | intronic |
CAediting_177482 | chr2_46716693_+ | intronic |
CAediting_177483 | chr2_46728583_+ | intronic |
CAediting_177484 | chr2_46728656_+ | intronic |
CAediting_177485 | chr2_46728657_+ | intronic |
CAediting_177486 | chr2_46728736_+ | intronic |
CAediting_177487 | chr2_46730346_+ | intronic |
CAediting_177488 | chr2_46733357_+ | intronic |
CAediting_177489 | chr2_46733366_+ | intronic |
CAediting_177490 | chr2_46733427_+ | intronic |
CAediting_177491 | chr2_46733470_+ | intronic |
CAediting_177492 | chr2_46733475_+ | intronic |
CAediting_177493 | chr2_46733476_+ | intronic |
CAediting_177494 | chr2_46733488_+ | intronic |
CAediting_177495 | chr2_46733490_+ | intronic |
CAediting_177496 | chr2_46733498_+ | intronic |
CAediting_177497 | chr2_46741378_+ | intronic |
CAediting_177498 | chr2_46747362_+ | intronic |
CAediting_177499 | chr2_46748439_+ | intronic |
CAediting_177500 | chr2_46757746_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_177465 | chr2_46710608_+ | LINE | L1 | L1M4 |
CAediting_177466 | chr2_46710616_+ | LINE | L1 | L1M4 |
CAediting_177467 | chr2_46710624_+ | LINE | L1 | L1M4 |
CAediting_177468 | chr2_46710625_+ | LINE | L1 | L1M4 |
CAediting_177469 | chr2_46710626_+ | LINE | L1 | L1M4 |
CAediting_177470 | chr2_46713174_+ | SINE | Alu | AluJb |
CAediting_177471 | chr2_46713205_+ | SINE | Alu | AluJb |
CAediting_177472 | chr2_46713206_+ | SINE | Alu | AluJb |
CAediting_177473 | chr2_46715159_+ | SINE | Alu | AluJb |
CAediting_177474 | chr2_46715224_+ | SINE | Alu | AluJb |
CAediting_177475 | chr2_46715228_+ | SINE | Alu | AluJb |
CAediting_177476 | chr2_46715232_+ | SINE | Alu | AluJb |
CAediting_177477 | chr2_46715250_+ | SINE | Alu | AluJb |
CAediting_177478 | chr2_46715251_+ | SINE | Alu | AluJb |
CAediting_177479 | chr2_46715268_+ | SINE | Alu | AluJb |
CAediting_177480 | chr2_46715273_+ | SINE | Alu | AluJb |
CAediting_177481 | chr2_46715292_+ | SINE | Alu | AluJb |
CAediting_177482 | chr2_46716693_+ | SINE | Alu | AluJo |
CAediting_177483 | chr2_46728583_+ | SINE | Alu | AluSz |
CAediting_177484 | chr2_46728656_+ | SINE | Alu | AluSz |
CAediting_177485 | chr2_46728657_+ | SINE | Alu | AluSz |
CAediting_177486 | chr2_46728736_+ | SINE | Alu | AluSz |
CAediting_177487 | chr2_46730346_+ | SINE | Alu | AluSx1 |
CAediting_177488 | chr2_46733357_+ | SINE | Alu | AluSx |
CAediting_177489 | chr2_46733366_+ | SINE | Alu | AluSx |
CAediting_177490 | chr2_46733427_+ | SINE | Alu | AluJb |
CAediting_177491 | chr2_46733470_+ | SINE | Alu | AluJb |
CAediting_177492 | chr2_46733475_+ | SINE | Alu | AluJb |
CAediting_177493 | chr2_46733476_+ | SINE | Alu | AluJb |
CAediting_177494 | chr2_46733488_+ | SINE | Alu | AluJb |
CAediting_177495 | chr2_46733490_+ | SINE | Alu | AluJb |
CAediting_177496 | chr2_46733498_+ | SINE | Alu | AluJb |
CAediting_177497 | chr2_46741378_+ | SINE | Alu | AluSg |
CAediting_177498 | chr2_46747362_+ | SINE | Alu | AluJb |
CAediting_177499 | chr2_46748439_+ | SINE | Alu | AluJb |
CAediting_177500 | chr2_46757746_+ | SINE | Alu | AluSx |
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RNA A-to-I editing events in the alternative splicing sites for SOCS5 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SOCS5 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for SOCS5 |
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The effects of the RNA editing to the miRNA binding sites for SOCS5 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1306323 | chr19_13836462_- | ENSG00000171150.7 | ENST00000306503 | hsa-miR-27a-3p | 46760968 | 46760975 | 8mer-1a | 46760955 | 46760975 | 150 | -16.19 |
CAediting_228905 | chr2_188297554_+ | ENSG00000171150.7 | ENST00000306503 | hsa-miR-561-3p | 46761098 | 46761104 | 7mer-m8 | 46761084 | 46761105 | 148 | -8.76 |
CAediting_524911 | chr7_5495852_- | ENSG00000171150.7 | ENST00000306503 | hsa-miR-589-3p | 46761398 | 46761404 | 7mer-m8 | 46761382 | 46761405 | 147 | -16.05 |
CAediting_573001 | chr7_92204086_- | ENSG00000171150.7 | ENST00000306503 | hsa-miR-1285-5p | 46760980 | 46760986 | 7mer-m8 | 46760967 | 46760987 | 146 | -15.39 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1160181 | chr17_7017644_- | ENSG00000171150.7 | ENST00000306503 | hsa-miR-195-3p | 46760475 | 46760481 | 7mer-m8 | 46760461 | 46760482 | 142 | -12.5 |
CAediting_77128 | chr1_85133844_+ | ENSG00000171150.7 | ENST00000306503 | hsa-miR-4423-3p | 46760306 | 46760312 | 7mer-m8 | 46760293 | 46760313 | 150 | -17.19 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000171150.7 | ENST00000306503 | hsa-miR-548aa | 46760387 | 46760393 | 7mer-m8 | 46760371 | 46760394 | 148 | -8.99 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000171150.7 | ENST00000306503 | hsa-miR-548aa | 46760387 | 46760393 | 7mer-m8 | 46760371 | 46760394 | 148 | -8.99 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000171150.7 | ENST00000306503 | hsa-miR-548aa | 46760387 | 46760393 | 7mer-m8 | 46760371 | 46760394 | 148 | -8.99 |
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The effects of the RNA editing to the stability of the RNA structures for SOCS5 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for SOCS5 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
ESCA | CAediting_177496 | chr2_46733498_+ | . | . | 0.0229224960369218 | 0.312051093411094 | . | . |
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Relation with cancer stages for SOCS5 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for SOCS5 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for SOCS5 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SOCS5 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |