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Editing gene: CELSR1 (CAeditome ID:9620)

Gene summary for CELSR1

Gene summary

Gene information	Gene symbol	CELSR1
	Gene ID	9620
	Gene name	cadherin EGF LAG seven-pass G-type receptor 1
	Synonyms	ADGRC1\|CDHF9\|FMI2\|HFMI2\|LMPHM9\|ME2
	Cytomap	22q13.31
	Type of gene	protein-coding
	Description	cadherin EGF LAG seven-pass G-type receptor 1adhesion G protein-coupled receptor C1cadherin family member 9cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)flamingo homolog 2protocadherin flamingo 2
	Modification date	20210518
	UniProtAcc	Q9NYQ6
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
CELSR1	GO:0005654	Cadherin EGF LAG seven-pass G-type receptor 1	0000052
CELSR1	GO:0005886	Cadherin EGF LAG seven-pass G-type receptor 1	0000052

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RNA A-to-I events for CELSR1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000075275.15

RNA A-to-I editing events in Cancer.

CAediting_1494303(46375611, -), CAediting_1494304(46375616, -), CAediting_1494305(46375627, -), CAediting_1494306(46375629, -), CAediting_1494307(46375633, -), CAediting_1494308(46375640, -), CAediting_1494309(46375641, -), CAediting_1494310(46375652, -), CAediting_1494311(46375681, -), CAediting_1494312(46375698, -), CAediting_1494313(46375762, -), CAediting_1494314(46376472, -), CAediting_1494315(46376731, -), CAediting_1494316(46376738, -), CAediting_1494317(46376750, -), CAediting_1494318(46376755, -), CAediting_1494319(46376760, -), CAediting_1494320(46376761, -), CAediting_1494321(46376763, -), CAediting_1494322(46376768, -), CAediting_1494323(46376770, -), CAediting_1494324(46376802, -), CAediting_1494325(46383730, -), CAediting_1494326(46383734, -), CAediting_1494327(46383750, -), CAediting_1494328(46383821, -), CAediting_1494329(46386846, -), CAediting_1494330(46386864, -), CAediting_1494331(46386868, -), CAediting_1494332(46386875, -), CAediting_1494333(46386886, -), CAediting_1494334(46386891, -), CAediting_1494335(46386922, -), CAediting_1494336(46386975, -), CAediting_1494337(46386977, -), CAediting_1494338(46387415, -), CAediting_1494339(46387416, -), CAediting_1494340(46387466, -), CAediting_1494341(46387477, -), CAediting_1494342(46387478, -), CAediting_1494343(46388347, -), CAediting_1494344(46389731, -), CAediting_1494345(46389832, -), CAediting_1494346(46389890, -), CAediting_1494347(46389900, -), CAediting_1494348(46392745, -), CAediting_1494349(46392757, -), CAediting_1494350(46392805, -), CAediting_1494351(46397340, -), CAediting_1494352(46402006, -), CAediting_1494353(46402289, -), CAediting_1494354(46402314, -), CAediting_1494355(46402380, -), CAediting_1494356(46403359, -), CAediting_1494357(46403716, -), CAediting_1494358(46403756, -), CAediting_1494359(46404885, -), CAediting_1494360(46404897, -), CAediting_1494361(46404957, -), CAediting_1494362(46405338, -), CAediting_1494363(46405408, -), CAediting_1494364(46407404, -), CAediting_1494365(46407408, -), CAediting_1494366(46407482, -), CAediting_1494367(46407483, -), CAediting_1494368(46407510, -), CAediting_1494369(46407549, -), CAediting_1494370(46407550, -), CAediting_1494371(46407556, -), CAediting_1494372(46407580, -), CAediting_1494373(46407627, -), CAediting_1494374(46408366, -), CAediting_1494375(46408421, -), CAediting_1494376(46408429, -), CAediting_1494377(46408434, -), CAediting_1494378(46408483, -), CAediting_1494379(46423851, -), CAediting_1494380(46424140, -), CAediting_1494381(46424169, -), CAediting_1494382(46424374, -), CAediting_1494383(46427285, -), CAediting_1494384(46427333, -), CAediting_1494385(46434885, -), CAediting_1494386(46434983, -), CAediting_1494387(46434990, -), CAediting_1494388(46438794, -), CAediting_1494389(46457223, -), CAediting_1494390(46457233, -), CAediting_1494391(46460124, -), CAediting_1494392(46469618, -), CAediting_1494393(46469644, -), CAediting_1494394(46469648, -), CAediting_1494395(46471514, -), CAediting_1494396(46483516, -), CAediting_1494397(46483523, -), CAediting_1494398(46483537, -), CAediting_1494399(46483544, -), CAediting_1494400(46483564, -), CAediting_1494401(46483568, -), CAediting_1494402(46483586, -), CAediting_1494403(46483591, -), CAediting_1494404(46483598, -), CAediting_1494405(46492831, -), CAediting_1494406(46501096, -), CAediting_1494407(46501130, -), CAediting_1494408(46501145, -), CAediting_1494409(46501149, -), CAediting_1494410(46501285, -), CAediting_1494411(46501289, -), CAediting_1494412(46518005, -), CAediting_1494413(46520023, -), CAediting_1494414(46520523, -), CAediting_1494415(46520585, -), CAediting_1494416(46520589, -), CAediting_1494417(46520598, -), CAediting_1494418(46520625, -), CAediting_1494419(46520640, -), CAediting_1494420(46520641, -), CAediting_1494421(46520734, -), CAediting_1494422(46520735, -), CAediting_1494423(46522254, -), CAediting_1494424(46522264, -), CAediting_1494425(46522290, -), CAediting_1494426(46522383, -), CAediting_1494427(46522386, -), CAediting_1494428(46529679, -), CAediting_1494429(46529708, -), CAediting_1494430(46529713, -), CAediting_1494431(46529720, -), CAediting_1494432(46531344, -), CAediting_1494433(46531374, -),

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RNA editing positional annotations for CELSR1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1494303	chr22_46375611_-	ncRNA_intronic
CAediting_1494304	chr22_46375616_-	ncRNA_intronic
CAediting_1494305	chr22_46375627_-	ncRNA_intronic
CAediting_1494306	chr22_46375629_-	ncRNA_intronic
CAediting_1494307	chr22_46375633_-	ncRNA_intronic
CAediting_1494308	chr22_46375640_-	ncRNA_intronic
CAediting_1494309	chr22_46375641_-	ncRNA_intronic
CAediting_1494310	chr22_46375652_-	ncRNA_intronic
CAediting_1494311	chr22_46375681_-	ncRNA_intronic
CAediting_1494312	chr22_46375698_-	ncRNA_intronic
CAediting_1494313	chr22_46375762_-	ncRNA_intronic
CAediting_1494314	chr22_46376472_-	ncRNA_intronic
CAediting_1494315	chr22_46376731_-	ncRNA_intronic
CAediting_1494316	chr22_46376738_-	ncRNA_intronic
CAediting_1494317	chr22_46376750_-	ncRNA_intronic
CAediting_1494318	chr22_46376755_-	ncRNA_intronic
CAediting_1494319	chr22_46376760_-	ncRNA_intronic
CAediting_1494320	chr22_46376761_-	ncRNA_intronic
CAediting_1494321	chr22_46376763_-	ncRNA_intronic
CAediting_1494322	chr22_46376768_-	ncRNA_intronic
CAediting_1494323	chr22_46376770_-	ncRNA_intronic
CAediting_1494324	chr22_46376802_-	ncRNA_intronic
CAediting_1494325	chr22_46383730_-	intronic
CAediting_1494326	chr22_46383734_-	intronic
CAediting_1494327	chr22_46383750_-	intronic
CAediting_1494328	chr22_46383821_-	intronic
CAediting_1494329	chr22_46386846_-	intronic
CAediting_1494330	chr22_46386864_-	intronic
CAediting_1494331	chr22_46386868_-	intronic
CAediting_1494332	chr22_46386875_-	intronic
CAediting_1494333	chr22_46386886_-	intronic
CAediting_1494334	chr22_46386891_-	intronic
CAediting_1494335	chr22_46386922_-	intronic
CAediting_1494336	chr22_46386975_-	intronic
CAediting_1494337	chr22_46386977_-	intronic
CAediting_1494338	chr22_46387415_-	intronic
CAediting_1494339	chr22_46387416_-	intronic
CAediting_1494340	chr22_46387466_-	intronic
CAediting_1494341	chr22_46387477_-	intronic
CAediting_1494342	chr22_46387478_-	intronic
CAediting_1494343	chr22_46388347_-	intronic
CAediting_1494344	chr22_46389731_-	intronic
CAediting_1494345	chr22_46389832_-	intronic
CAediting_1494346	chr22_46389890_-	intronic
CAediting_1494347	chr22_46389900_-	intronic
CAediting_1494348	chr22_46392745_-	intronic
CAediting_1494349	chr22_46392757_-	intronic
CAediting_1494350	chr22_46392805_-	intronic
CAediting_1494351	chr22_46397340_-	intronic
CAediting_1494352	chr22_46402006_-	intronic
CAediting_1494353	chr22_46402289_-	intronic
CAediting_1494354	chr22_46402314_-	intronic
CAediting_1494355	chr22_46402380_-	intronic
CAediting_1494356	chr22_46403359_-	intronic
CAediting_1494357	chr22_46403716_-	intronic
CAediting_1494358	chr22_46403756_-	intronic
CAediting_1494359	chr22_46404885_-	intronic
CAediting_1494360	chr22_46404897_-	intronic
CAediting_1494361	chr22_46404957_-	intronic
CAediting_1494362	chr22_46405338_-	intronic
CAediting_1494363	chr22_46405408_-	intronic
CAediting_1494364	chr22_46407404_-	intronic
CAediting_1494365	chr22_46407408_-	intronic
CAediting_1494366	chr22_46407482_-	intronic
CAediting_1494367	chr22_46407483_-	intronic
CAediting_1494368	chr22_46407510_-	intronic
CAediting_1494369	chr22_46407549_-	intronic
CAediting_1494370	chr22_46407550_-	intronic
CAediting_1494371	chr22_46407556_-	intronic
CAediting_1494372	chr22_46407580_-	intronic
CAediting_1494373	chr22_46407627_-	intronic
CAediting_1494374	chr22_46408366_-	intronic
CAediting_1494375	chr22_46408421_-	intronic
CAediting_1494376	chr22_46408429_-	intronic
CAediting_1494377	chr22_46408434_-	intronic
CAediting_1494378	chr22_46408483_-	intronic
CAediting_1494379	chr22_46423851_-	intronic
CAediting_1494380	chr22_46424140_-	intronic
CAediting_1494381	chr22_46424169_-	intronic
CAediting_1494382	chr22_46424374_-	intronic
CAediting_1494383	chr22_46427285_-	intronic
CAediting_1494384	chr22_46427333_-	intronic
CAediting_1494385	chr22_46434885_-	intronic
CAediting_1494386	chr22_46434983_-	intronic
CAediting_1494387	chr22_46434990_-	intronic
CAediting_1494388	chr22_46438794_-	intronic
CAediting_1494389	chr22_46457223_-	intronic
CAediting_1494390	chr22_46457233_-	intronic
CAediting_1494391	chr22_46460124_-	intronic
CAediting_1494392	chr22_46469618_-	intronic
CAediting_1494393	chr22_46469644_-	intronic
CAediting_1494394	chr22_46469648_-	intronic
CAediting_1494395	chr22_46471514_-	intronic
CAediting_1494396	chr22_46483516_-	intronic
CAediting_1494397	chr22_46483523_-	intronic
CAediting_1494398	chr22_46483537_-	intronic
CAediting_1494399	chr22_46483544_-	intronic
CAediting_1494400	chr22_46483564_-	intronic
CAediting_1494401	chr22_46483568_-	intronic
CAediting_1494402	chr22_46483586_-	intronic
CAediting_1494403	chr22_46483591_-	intronic
CAediting_1494404	chr22_46483598_-	intronic
CAediting_1494405	chr22_46492831_-	intronic
CAediting_1494406	chr22_46501096_-	intronic
CAediting_1494407	chr22_46501130_-	intronic
CAediting_1494408	chr22_46501145_-	intronic
CAediting_1494409	chr22_46501149_-	intronic
CAediting_1494410	chr22_46501285_-	intronic
CAediting_1494411	chr22_46501289_-	intronic
CAediting_1494412	chr22_46518005_-	intronic
CAediting_1494413	chr22_46520023_-	intronic
CAediting_1494414	chr22_46520523_-	intronic
CAediting_1494415	chr22_46520585_-	intronic
CAediting_1494416	chr22_46520589_-	intronic
CAediting_1494417	chr22_46520598_-	intronic
CAediting_1494418	chr22_46520625_-	intronic
CAediting_1494419	chr22_46520640_-	intronic
CAediting_1494420	chr22_46520641_-	intronic
CAediting_1494421	chr22_46520734_-	intronic
CAediting_1494422	chr22_46520735_-	intronic
CAediting_1494423	chr22_46522254_-	intronic
CAediting_1494424	chr22_46522264_-	intronic
CAediting_1494425	chr22_46522290_-	intronic
CAediting_1494426	chr22_46522383_-	intronic
CAediting_1494427	chr22_46522386_-	intronic
CAediting_1494428	chr22_46529679_-	intronic
CAediting_1494429	chr22_46529708_-	intronic
CAediting_1494430	chr22_46529713_-	intronic
CAediting_1494431	chr22_46529720_-	intronic
CAediting_1494432	chr22_46531344_-	ncRNA_intronic
CAediting_1494433	chr22_46531374_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1494303	chr22_46375611_-	SINE	Alu	AluSz
CAediting_1494304	chr22_46375616_-	SINE	Alu	AluSz
CAediting_1494305	chr22_46375627_-	SINE	Alu	AluSz
CAediting_1494306	chr22_46375629_-	SINE	Alu	AluSz
CAediting_1494307	chr22_46375633_-	SINE	Alu	AluSz
CAediting_1494308	chr22_46375640_-	SINE	Alu	AluSz
CAediting_1494309	chr22_46375641_-	SINE	Alu	AluSz
CAediting_1494310	chr22_46375652_-	SINE	Alu	AluSz
CAediting_1494311	chr22_46375681_-	SINE	Alu	AluSz
CAediting_1494312	chr22_46375698_-	SINE	Alu	AluSz
CAediting_1494313	chr22_46375762_-	SINE	Alu	AluSz
CAediting_1494314	chr22_46376472_-	SINE	Alu	AluSx1
CAediting_1494315	chr22_46376731_-	SINE	Alu	AluSc
CAediting_1494316	chr22_46376738_-	SINE	Alu	AluSc
CAediting_1494317	chr22_46376750_-	SINE	Alu	AluSc
CAediting_1494318	chr22_46376755_-	SINE	Alu	AluSc
CAediting_1494319	chr22_46376760_-	SINE	Alu	AluSc
CAediting_1494320	chr22_46376761_-	SINE	Alu	AluSc
CAediting_1494321	chr22_46376763_-	SINE	Alu	AluSc
CAediting_1494322	chr22_46376768_-	SINE	Alu	AluSc
CAediting_1494323	chr22_46376770_-	SINE	Alu	AluSc
CAediting_1494324	chr22_46376802_-	SINE	Alu	AluSc
CAediting_1494325	chr22_46383730_-	SINE	Alu	AluJb
CAediting_1494326	chr22_46383734_-	SINE	Alu	AluJb
CAediting_1494327	chr22_46383750_-	SINE	Alu	AluJb
CAediting_1494328	chr22_46383821_-	SINE	Alu	AluJb
CAediting_1494329	chr22_46386846_-	SINE	Alu	AluSq2
CAediting_1494330	chr22_46386864_-	SINE	Alu	AluSq2
CAediting_1494331	chr22_46386868_-	SINE	Alu	AluSq2
CAediting_1494332	chr22_46386875_-	SINE	Alu	AluSq2
CAediting_1494333	chr22_46386886_-	SINE	Alu	AluSq2
CAediting_1494334	chr22_46386891_-	SINE	Alu	AluSq2
CAediting_1494335	chr22_46386922_-	SINE	Alu	AluSq2
CAediting_1494336	chr22_46386975_-	SINE	Alu	AluSq2
CAediting_1494337	chr22_46386977_-	SINE	Alu	AluSq2
CAediting_1494338	chr22_46387415_-	SINE	Alu	AluSz6
CAediting_1494339	chr22_46387416_-	SINE	Alu	AluSz6
CAediting_1494340	chr22_46387466_-	SINE	Alu	AluSz6
CAediting_1494341	chr22_46387477_-	SINE	Alu	AluSz6
CAediting_1494342	chr22_46387478_-	SINE	Alu	AluSz6
CAediting_1494343	chr22_46388347_-	SINE	Alu	AluSx1
CAediting_1494344	chr22_46389731_-	SINE	Alu	AluSx1
CAediting_1494345	chr22_46389832_-	SINE	Alu	AluSx1
CAediting_1494346	chr22_46389890_-	SINE	Alu	AluSx1
CAediting_1494347	chr22_46389900_-	SINE	Alu	AluSx1
CAediting_1494348	chr22_46392745_-	SINE	Alu	AluJb
CAediting_1494349	chr22_46392757_-	SINE	Alu	AluJb
CAediting_1494350	chr22_46392805_-	SINE	Alu	AluJb
CAediting_1494351	chr22_46397340_-	SINE	Alu	AluSz
CAediting_1494352	chr22_46402006_-	SINE	Alu	AluSx1
CAediting_1494353	chr22_46402289_-	SINE	Alu	AluSp
CAediting_1494354	chr22_46402314_-	SINE	Alu	AluSp
CAediting_1494355	chr22_46402380_-	SINE	Alu	AluSp
CAediting_1494356	chr22_46403359_-	SINE	Alu	AluY
CAediting_1494357	chr22_46403716_-	SINE	Alu	AluSx1
CAediting_1494358	chr22_46403756_-	SINE	Alu	AluSx1
CAediting_1494359	chr22_46404885_-	SINE	Alu	AluSq
CAediting_1494360	chr22_46404897_-	SINE	Alu	AluSq
CAediting_1494361	chr22_46404957_-	SINE	Alu	AluSq
CAediting_1494362	chr22_46405338_-	SINE	Alu	AluYj4
CAediting_1494363	chr22_46405408_-	SINE	Alu	AluYj4
CAediting_1494364	chr22_46407404_-	SINE	Alu	AluSq2
CAediting_1494365	chr22_46407408_-	SINE	Alu	AluSq2
CAediting_1494366	chr22_46407482_-	SINE	Alu	AluSq2
CAediting_1494367	chr22_46407483_-	SINE	Alu	AluSq2
CAediting_1494368	chr22_46407510_-	SINE	Alu	AluSq2
CAediting_1494369	chr22_46407549_-	SINE	Alu	AluSq2
CAediting_1494370	chr22_46407550_-	SINE	Alu	AluSq2
CAediting_1494371	chr22_46407556_-	SINE	Alu	AluSq2
CAediting_1494372	chr22_46407580_-	SINE	Alu	AluSq2
CAediting_1494373	chr22_46407627_-	SINE	Alu	AluSq2
CAediting_1494374	chr22_46408366_-	SINE	Alu	AluSx1
CAediting_1494375	chr22_46408421_-	SINE	Alu	AluSx1
CAediting_1494376	chr22_46408429_-	SINE	Alu	AluSx1
CAediting_1494377	chr22_46408434_-	SINE	Alu	AluSx1
CAediting_1494378	chr22_46408483_-	SINE	Alu	AluSx1
CAediting_1494379	chr22_46423851_-	SINE	Alu	AluSx
CAediting_1494380	chr22_46424140_-	SINE	Alu	AluJo
CAediting_1494381	chr22_46424169_-	SINE	Alu	AluJo
CAediting_1494382	chr22_46424374_-	SINE	Alu	AluJo
CAediting_1494383	chr22_46427285_-	SINE	Alu	AluSx
CAediting_1494384	chr22_46427333_-	SINE	Alu	AluSx
CAediting_1494385	chr22_46434885_-	SINE	Alu	AluSz
CAediting_1494386	chr22_46434983_-	SINE	Alu	AluSz
CAediting_1494387	chr22_46434990_-	SINE	Alu	AluSz
CAediting_1494388	chr22_46438794_-	SINE	Alu	AluSx
CAediting_1494389	chr22_46457223_-	SINE	Alu	AluSg
CAediting_1494390	chr22_46457233_-	SINE	Alu	AluSg
CAediting_1494391	chr22_46460124_-	SINE	Alu	AluSx3
CAediting_1494392	chr22_46469618_-	SINE	Alu	AluSz
CAediting_1494393	chr22_46469644_-	SINE	Alu	AluSz
CAediting_1494394	chr22_46469648_-	SINE	Alu	AluSz
CAediting_1494395	chr22_46471514_-	SINE	Alu	AluJr
CAediting_1494396	chr22_46483516_-	SINE	MIR	MIR
CAediting_1494397	chr22_46483523_-	SINE	MIR	MIR
CAediting_1494398	chr22_46483537_-	SINE	MIR	MIR
CAediting_1494399	chr22_46483544_-	SINE	MIR	MIR
CAediting_1494400	chr22_46483564_-	SINE	MIR	MIR
CAediting_1494401	chr22_46483568_-	SINE	MIR	MIR
CAediting_1494402	chr22_46483586_-	SINE	MIR	MIR
CAediting_1494403	chr22_46483591_-	SINE	MIR	MIR
CAediting_1494404	chr22_46483598_-	SINE	MIR	MIR
CAediting_1494405	chr22_46492831_-	SINE	Alu	AluSx1
CAediting_1494406	chr22_46501096_-	SINE	Alu	AluSx1
CAediting_1494407	chr22_46501130_-	SINE	Alu	AluSx1
CAediting_1494408	chr22_46501145_-	SINE	Alu	AluSx1
CAediting_1494409	chr22_46501149_-	SINE	Alu	AluSx1
CAediting_1494410	chr22_46501285_-	SINE	Alu	AluSx
CAediting_1494411	chr22_46501289_-	SINE	Alu	AluSx
CAediting_1494412	chr22_46518005_-	SINE	Alu	AluSp
CAediting_1494413	chr22_46520023_-	SINE	Alu	AluSx1
CAediting_1494414	chr22_46520523_-	SINE	Alu	AluSq2
CAediting_1494415	chr22_46520585_-	SINE	Alu	AluSq2
CAediting_1494416	chr22_46520589_-	SINE	Alu	AluSq2
CAediting_1494417	chr22_46520598_-	SINE	Alu	AluSq2
CAediting_1494418	chr22_46520625_-	SINE	Alu	AluSq2
CAediting_1494419	chr22_46520640_-	SINE	Alu	AluSq2
CAediting_1494420	chr22_46520641_-	SINE	Alu	AluSq2
CAediting_1494421	chr22_46520734_-	SINE	Alu	AluSq2
CAediting_1494422	chr22_46520735_-	SINE	Alu	AluSq2
CAediting_1494423	chr22_46522254_-	SINE	Alu	AluJb
CAediting_1494424	chr22_46522264_-	SINE	Alu	AluJb
CAediting_1494425	chr22_46522290_-	SINE	Alu	AluJb
CAediting_1494426	chr22_46522383_-	SINE	Alu	AluJb
CAediting_1494427	chr22_46522386_-	SINE	Alu	AluJb
CAediting_1494428	chr22_46529679_-	SINE	Alu	AluSz
CAediting_1494429	chr22_46529708_-	SINE	Alu	AluSz
CAediting_1494430	chr22_46529713_-	SINE	Alu	AluSz
CAediting_1494431	chr22_46529720_-	SINE	Alu	AluSz
CAediting_1494432	chr22_46531344_-	SINE	Alu	AluSx1
CAediting_1494433	chr22_46531374_-	SINE	Alu	AluSx1

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RNA A-to-I editing events in the alternative splicing sites for CELSR1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000075275.15.CELSR1.

Correlation between RNA A-to-I editing and PSI for ENSG00000075275.15.CELSR1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CELSR1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ESCA.CAediting_1494306.ENSG00000075275.CELSR1.png
Soverview

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Protein coding region RNA A-to-I editings for CELSR1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CELSR1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1306324	chr19_13836464_-	ENSG00000075275.15	ENST00000262738	hsa-miR-27a-3p	46362064	46362070	7mer-m8	46362063	46362081	144	-15.42
CAediting_1229414	chr17_67471546_+	ENSG00000075275.15	ENST00000262738	hsa-miR-548aa	46361561	46361567	7mer-m8	46361560	46361582	154	-17.77
CAediting_1229415	chr17_67471547_+	ENSG00000075275.15	ENST00000262738	hsa-miR-548aa	46362194	46362200	7mer-m8	46362193	46362215	151	-16.5
CAediting_77128	chr1_85133844_+	ENSG00000075275.15	ENST00000262738	hsa-miR-4423-3p	46361807	46361814	8mer-1a	46361807	46361827	145	-16.32
CAediting_228905	chr2_188297554_+	ENSG00000075275.15	ENST00000262738	hsa-miR-561-3p	46361542	46361549	8mer-1a	46361542	46361563	164	-14.34
CAediting_604450	chr7_133034877_-	ENSG00000075275.15	ENST00000262738	hsa-miR-3654	46362827	46362833	7mer-m8	46362826	46362844	140	-19.35
CAediting_1524209	chrX_134546392_-	ENSG00000075275.15	ENST00000262738	hsa-miR-503-5p	46362382	46362388	7mer-1a	46362382	46362405	140	-26.53

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1054808	chr15_66496985_-	ENSG00000075275.15	ENST00000262738	hsa-miR-4512	46362441	46362446	6mer	46362440	46362463	141	-23.53
CAediting_1229414	chr17_67471546_+	ENSG00000075275.15	ENST00000262738	hsa-miR-548aa	46361155	46361161	7mer-m8	46361154	46361178	143	-13.3
CAediting_1229415	chr17_67471547_+	ENSG00000075275.15	ENST00000262738	hsa-miR-548aa	46361155	46361161	7mer-m8	46361154	46361178	143	-13.3
CAediting_748296	chr10_51299626_+	ENSG00000075275.15	ENST00000262738	hsa-miR-605-3p	46362470	46362476	7mer-m8	46362469	46362491	154	-12.73

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CELSR1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for CELSR1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
OV	CAediting_1494306	chr22_46375629_-	.	.	0.0404392482979405	0.198462790537929	.	.
BRCA	CAediting_1494309	chr22_46375641_-	0.013869048884866	0.288834368375843	.	.	.	.

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Relation with cancer stages for CELSR1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for CELSR1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for CELSR1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for CELSR1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
CELSR1	C1704423	Milroy Disease	1	GENOMICS_ENGLAND
CELSR1	C3891448	NEURAL TUBE DEFECTS, SUSCEPTIBILITY TO	1	UNIPROT

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene