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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CD47 (CAeditome ID:961) |
Gene summary for CD47 |
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Gene information | Gene symbol | CD47 | Gene ID | 961 |
Gene name | CD47 molecule | |
Synonyms | IAP|MER6|OA3 | |
Cytomap | 3q13.12 | |
Type of gene | protein-coding | |
Description | leukocyte surface antigen CD47CD47 antigen (Rh-related antigen, integrin-associated signal transducer)CD47 glycoproteinRh-related antigenantigen identified by monoclonal antibody 1D8antigenic surface determinant protein OA3integrin associated protei | |
Modification date | 20210524 | |
UniProtAcc | Q08722 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
CD47 | GO:1904669 | Leukocyte surface antigen CD47 | 24022490 |
CD47 | GO:0008284 | Leukocyte surface antigen CD47 | 15383453 |
CD47 | GO:0022409 | Leukocyte surface antigen CD47 | 15383453 |
CD47 | GO:0050870 | Leukocyte surface antigen CD47 | 15383453 |
CD47 | GO:0009986 | Leukocyte surface antigen CD47 | 11509594 |
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RNA A-to-I events for CD47 |
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CAediting_299261(108048439, -), CAediting_299262(108048481, -), CAediting_299263(108048496, -), CAediting_299264(108048513, -), CAediting_299265(108048517, -), CAediting_299266(108050165, -), CAediting_299267(108050180, -), CAediting_299268(108050185, -), CAediting_299269(108050207, -), CAediting_299270(108050226, -), CAediting_299271(108050229, -), CAediting_299272(108050239, -), CAediting_299273(108050246, -), CAediting_299274(108050256, -), CAediting_299275(108050286, -), CAediting_299276(108050287, -), CAediting_299277(108050291, -), CAediting_299278(108050319, -), CAediting_299279(108050342, -), CAediting_299280(108050344, -), CAediting_299281(108050353, -), CAediting_299282(108052682, -), CAediting_299283(108052692, -), CAediting_299284(108052710, -), CAediting_299285(108052737, -), CAediting_299286(108052743, -), CAediting_299287(108052811, -), CAediting_299288(108052855, -), CAediting_299289(108052872, -), CAediting_299290(108052882, -), CAediting_299291(108052916, -), CAediting_299292(108054140, -), CAediting_299293(108054148, -), CAediting_299294(108054153, -), CAediting_299295(108054211, -), CAediting_299296(108054215, -), CAediting_299297(108054217, -), CAediting_299298(108062640, -), CAediting_299299(108062728, -), CAediting_299300(108062747, -), CAediting_299301(108062856, -), CAediting_299302(108062857, -), CAediting_299303(108062859, -), CAediting_299304(108062883, -), CAediting_299305(108062884, -), CAediting_299306(108062888, -), CAediting_299307(108062926, -), CAediting_299308(108062927, -), CAediting_299309(108062933, -), |
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RNA editing positional annotations for CD47 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_299261 | chr3_108048439_- | ncRNA_intronic |
CAediting_299262 | chr3_108048481_- | ncRNA_intronic |
CAediting_299263 | chr3_108048496_- | ncRNA_intronic |
CAediting_299264 | chr3_108048513_- | ncRNA_intronic |
CAediting_299265 | chr3_108048517_- | ncRNA_intronic |
CAediting_299266 | chr3_108050165_- | ncRNA_intronic |
CAediting_299267 | chr3_108050180_- | ncRNA_intronic |
CAediting_299268 | chr3_108050185_- | ncRNA_intronic |
CAediting_299269 | chr3_108050207_- | ncRNA_intronic |
CAediting_299270 | chr3_108050226_- | ncRNA_intronic |
CAediting_299271 | chr3_108050229_- | ncRNA_intronic |
CAediting_299272 | chr3_108050239_- | ncRNA_intronic |
CAediting_299273 | chr3_108050246_- | ncRNA_intronic |
CAediting_299274 | chr3_108050256_- | ncRNA_intronic |
CAediting_299275 | chr3_108050286_- | ncRNA_intronic |
CAediting_299276 | chr3_108050287_- | ncRNA_intronic |
CAediting_299277 | chr3_108050291_- | ncRNA_intronic |
CAediting_299278 | chr3_108050319_- | ncRNA_intronic |
CAediting_299279 | chr3_108050342_- | ncRNA_intronic |
CAediting_299280 | chr3_108050344_- | ncRNA_intronic |
CAediting_299281 | chr3_108050353_- | ncRNA_intronic |
CAediting_299282 | chr3_108052682_- | ncRNA_exonic |
CAediting_299283 | chr3_108052692_- | ncRNA_exonic |
CAediting_299284 | chr3_108052710_- | ncRNA_exonic |
CAediting_299285 | chr3_108052737_- | ncRNA_exonic |
CAediting_299286 | chr3_108052743_- | ncRNA_exonic |
CAediting_299287 | chr3_108052811_- | ncRNA_exonic |
CAediting_299288 | chr3_108052855_- | ncRNA_exonic |
CAediting_299289 | chr3_108052872_- | ncRNA_exonic |
CAediting_299290 | chr3_108052882_- | ncRNA_exonic |
CAediting_299291 | chr3_108052916_- | ncRNA_exonic |
CAediting_299292 | chr3_108054140_- | ncRNA_exonic |
CAediting_299293 | chr3_108054148_- | ncRNA_exonic |
CAediting_299294 | chr3_108054153_- | ncRNA_exonic |
CAediting_299295 | chr3_108054211_- | ncRNA_exonic |
CAediting_299296 | chr3_108054215_- | ncRNA_exonic |
CAediting_299297 | chr3_108054217_- | ncRNA_exonic |
CAediting_299298 | chr3_108062640_- | intronic |
CAediting_299299 | chr3_108062728_- | intronic |
CAediting_299300 | chr3_108062747_- | intronic |
CAediting_299301 | chr3_108062856_- | intronic |
CAediting_299302 | chr3_108062857_- | intronic |
CAediting_299303 | chr3_108062859_- | intronic |
CAediting_299304 | chr3_108062883_- | intronic |
CAediting_299305 | chr3_108062884_- | intronic |
CAediting_299306 | chr3_108062888_- | intronic |
CAediting_299307 | chr3_108062926_- | intronic |
CAediting_299308 | chr3_108062927_- | intronic |
CAediting_299309 | chr3_108062933_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_299261 | chr3_108048439_- | SINE | Alu | AluY |
CAediting_299262 | chr3_108048481_- | SINE | Alu | AluY |
CAediting_299263 | chr3_108048496_- | SINE | Alu | AluY |
CAediting_299264 | chr3_108048513_- | SINE | Alu | AluY |
CAediting_299265 | chr3_108048517_- | SINE | Alu | AluY |
CAediting_299266 | chr3_108050165_- | SINE | Alu | AluSc |
CAediting_299267 | chr3_108050180_- | SINE | Alu | AluSc |
CAediting_299268 | chr3_108050185_- | SINE | Alu | AluSc |
CAediting_299269 | chr3_108050207_- | SINE | Alu | AluSc |
CAediting_299270 | chr3_108050226_- | SINE | Alu | AluSc |
CAediting_299271 | chr3_108050229_- | SINE | Alu | AluSc |
CAediting_299272 | chr3_108050239_- | SINE | Alu | AluSc |
CAediting_299273 | chr3_108050246_- | SINE | Alu | AluSc |
CAediting_299274 | chr3_108050256_- | SINE | Alu | AluSc |
CAediting_299275 | chr3_108050286_- | SINE | Alu | AluSc |
CAediting_299276 | chr3_108050287_- | SINE | Alu | AluSc |
CAediting_299277 | chr3_108050291_- | SINE | Alu | AluSc |
CAediting_299278 | chr3_108050319_- | SINE | Alu | AluSc |
CAediting_299279 | chr3_108050342_- | SINE | Alu | AluSc |
CAediting_299280 | chr3_108050344_- | SINE | Alu | AluSc |
CAediting_299281 | chr3_108050353_- | SINE | Alu | AluSc |
CAediting_299282 | chr3_108052682_- | SINE | Alu | AluSz |
CAediting_299283 | chr3_108052692_- | SINE | Alu | AluSz |
CAediting_299284 | chr3_108052710_- | SINE | Alu | AluSz |
CAediting_299285 | chr3_108052737_- | SINE | Alu | AluSz |
CAediting_299286 | chr3_108052743_- | SINE | Alu | AluSz |
CAediting_299287 | chr3_108052811_- | SINE | Alu | AluSz |
CAediting_299288 | chr3_108052855_- | SINE | Alu | AluSz |
CAediting_299289 | chr3_108052872_- | SINE | Alu | AluSz |
CAediting_299290 | chr3_108052882_- | SINE | Alu | AluSz |
CAediting_299291 | chr3_108052916_- | SINE | Alu | AluSz |
CAediting_299292 | chr3_108054140_- | SINE | Alu | FLAM_A |
CAediting_299293 | chr3_108054148_- | SINE | Alu | FLAM_A |
CAediting_299294 | chr3_108054153_- | SINE | Alu | FLAM_A |
CAediting_299295 | chr3_108054211_- | SINE | Alu | FLAM_A |
CAediting_299296 | chr3_108054215_- | SINE | Alu | FLAM_A |
CAediting_299297 | chr3_108054217_- | SINE | Alu | FLAM_A |
CAediting_299298 | chr3_108062640_- | SINE | Alu | AluSx3 |
CAediting_299299 | chr3_108062728_- | SINE | Alu | AluSx3 |
CAediting_299300 | chr3_108062747_- | SINE | Alu | AluSx3 |
CAediting_299301 | chr3_108062856_- | SINE | Alu | AluSx3 |
CAediting_299302 | chr3_108062857_- | SINE | Alu | AluSx3 |
CAediting_299303 | chr3_108062859_- | SINE | Alu | AluSx3 |
CAediting_299304 | chr3_108062883_- | SINE | Alu | AluSx3 |
CAediting_299305 | chr3_108062884_- | SINE | Alu | AluSx3 |
CAediting_299306 | chr3_108062888_- | SINE | Alu | AluSx3 |
CAediting_299307 | chr3_108062926_- | SINE | Alu | AluSx3 |
CAediting_299308 | chr3_108062927_- | SINE | Alu | AluSx3 |
CAediting_299309 | chr3_108062933_- | SINE | Alu | AluSx3 |
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RNA A-to-I editing events in the alternative splicing sites for CD47 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_299296 | chr3_108054215_- | 108054213:108054235 | 3SS | 1+0i | TTGTTTTGTTTTGTTTTTAGAGA | 9.43 | TTGTTTTGTTTTGTTTTTAGGGA | 11.03 |
MEX_2 | CAediting_299296 | chr3_108054215_- | 108054213:108054235 | 3SS | 1+0i | TTGTTTTGTTTTGTTTTTAGAGA | 9.43 | TTGTTTTGTTTTGTTTTTAGGGA | 11.03 |
MEX_1 | CAediting_299296 | chr3_108054215_- | 108054213:108054235 | 3SS | 1+0i | TTGTTTTGTTTTGTTTTTAGAGA | 9.43 | TTGTTTTGTTTTGTTTTTAGGGA | 11.03 |
ES | CAediting_299297 | chr3_108054217_- | 108054213:108054235 | 3SS | 0+2i | TTGTTTTGTTTTGTTTTTAGAGA | 9.43 | TTGTTTTGTTTTGTTTTTGGAGA | 1.48 |
MEX_2 | CAediting_299297 | chr3_108054217_- | 108054213:108054235 | 3SS | 0+2i | TTGTTTTGTTTTGTTTTTAGAGA | 9.43 | TTGTTTTGTTTTGTTTTTGGAGA | 1.48 |
MEX_1 | CAediting_299297 | chr3_108054217_- | 108054213:108054235 | 3SS | 0+2i | TTGTTTTGTTTTGTTTTTAGAGA | 9.43 | TTGTTTTGTTTTGTTTTTGGAGA | 1.48 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CD47 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CD47 |
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The effects of the RNA editing to the miRNA binding sites for CD47 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for CD47 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000471694.1 | processed_transcript | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_299282 | ENST00000471694.1 | chr3_108052682_- | -1832.40 | -1831.60 | -1853.80 |
CAediting_299283 | ENST00000471694.1 | chr3_108052692_- | -1831.70 | -1831.60 | -1853.80 |
CAediting_299284 | ENST00000471694.1 | chr3_108052710_- | -1832.80 | -1831.60 | -1853.80 |
CAediting_299285 | ENST00000471694.1 | chr3_108052737_- | -1836.40 | -1831.60 | -1853.80 |
CAediting_299286 | ENST00000471694.1 | chr3_108052743_- | -1835.40 | -1831.60 | -1853.80 |
CAediting_299287 | ENST00000471694.1 | chr3_108052811_- | -1832.00 | -1831.60 | -1853.80 |
CAediting_299288 | ENST00000471694.1 | chr3_108052855_- | -1837.00 | -1831.60 | -1853.80 |
CAediting_299289 | ENST00000471694.1 | chr3_108052872_- | -1831.50 | -1831.60 | -1853.80 |
CAediting_299290 | ENST00000471694.1 | chr3_108052882_- | -1833.70 | -1831.60 | -1853.80 |
CAediting_299291 | ENST00000471694.1 | chr3_108052916_- | -1833.40 | -1831.60 | -1853.80 |
CAediting_299292 | ENST00000471694.1 | chr3_108054140_- | -1834.70 | -1831.60 | -1853.80 |
CAediting_299293 | ENST00000471694.1 | chr3_108054148_- | -1835.00 | -1831.60 | -1853.80 |
CAediting_299294 | ENST00000471694.1 | chr3_108054153_- | -1834.30 | -1831.60 | -1853.80 |
CAediting_299295 | ENST00000471694.1 | chr3_108054211_- | -1831.30 | -1831.60 | -1853.80 |
CAediting_299296 | ENST00000471694.1 | chr3_108054215_- | -1830.70 | -1831.60 | -1853.80 |
CAediting_299297 | ENST00000471694.1 | chr3_108054217_- | -1831.80 | -1831.60 | -1853.80 |
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Relation with ADAR for CD47 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
THCA | CAediting_299297 | chr3_108054217_- | . | . | . | . | 0.0446027291574576 | 0.222416751792556 |
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Relation with cancer stages for CD47 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for CD47 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CD47 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CD47 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
CD47 | C0005586 | Bipolar Disorder | 1 | CTD_human |
CD47 | C0005587 | Depression, Bipolar | 1 | CTD_human |
CD47 | C0024713 | Manic Disorder | 1 | CTD_human |
CD47 | C0338831 | Manic | 1 | CTD_human |