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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CD44 (CAeditome ID:960)

Gene summary for CD44

check button Gene summary
Gene informationGene symbol

CD44

Gene ID

960

Gene nameCD44 molecule (Indian blood group)
SynonymsCDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1
Cytomap

11p13

Type of geneprotein-coding
DescriptionCD44 antigenGP90 lymphocyte homing/adhesion receptorHermes antigenIndian blood group antigencell surface glycoprotein CD44chondroitin sulfate proteoglycan 8epicanextracellular matrix receptor IIIhematopoietic cell E- and L-selectin ligandheparan
Modification date20210531
UniProtAcc

P16070

Context- 34103974(High Levels of Serum IgG for Opisthorchis viverrini and CD44 Expression Predict Worse Prognosis for Cholangiocarcinoma Patients after Curative Resection)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CD44

GO:0004896

CD44 antigen

17045821

CD44

GO:0005540

CD44 antigen

17170110

CD44

GO:0005540

CD44 antigen

17324121

CD44

GO:0007155

CD44 antigen

19703720

CD44

GO:0016477

CD44 antigen

22726066

CD44

GO:0030214

CD44 antigen

17170110

CD44

GO:0033138

CD44 antigen

17045821

CD44

GO:0042110

CD44 antigen

7528188

CD44

GO:0043518

CD44 antigen

17045821

CD44

GO:0044344

CD44 antigen

19577615

CD44

GO:0050731

CD44 antigen

17045821

CD44

GO:0070374

CD44 antigen

17045821

CD44

GO:1902166

CD44 antigen

17045821

CD44

GO:0005794

CD44 antigen

0000052

CD44

GO:0005829

CD44 antigen

0000052

CD44

GO:0005886

CD44 antigen

0000052

CD44

GO:0005886

CD44 antigen

20962267

CD44

GO:0009986

CD44 antigen

16809613

CD44

GO:0009986

CD44 antigen

17170110

CD44

GO:0016324

CD44 antigen

20962267

CD44

GO:0031258

CD44 antigen

20962267

CD44

GO:0042995

CD44 antigen

20962267

CD44

GO:0035692

CD44 antigen

17045821


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RNA A-to-I events for CD44

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000026508.15

check button RNA A-to-I editing events in Cancer.
CAediting_805861(35187018, +), CAediting_805862(35187023, +), CAediting_805863(35187053, +), CAediting_805864(35187176, +), CAediting_805865(35187887, +), CAediting_805866(35187914, +), CAediting_805867(35187939, +), CAediting_805868(35187940, +), CAediting_805869(35187943, +), CAediting_805870(35187944, +), CAediting_805871(35187967, +), CAediting_805872(35187979, +), CAediting_805873(35188817, +), CAediting_805874(35188823, +), CAediting_805875(35188834, +), CAediting_805876(35198701, +), CAediting_805877(35198717, +), CAediting_805878(35198724, +), CAediting_805879(35198795, +), CAediting_805880(35198952, +), CAediting_805881(35215642, +), CAediting_805882(35216773, +), CAediting_805883(35216802, +), CAediting_805884(35216806, +), CAediting_805885(35216843, +), CAediting_805886(35218398, +), CAediting_805887(35218494, +), CAediting_805888(35218549, +), CAediting_805889(35218722, +), CAediting_805890(35218724, +), CAediting_805891(35218725, +), CAediting_805892(35218729, +), CAediting_805893(35218744, +), CAediting_805894(35218751, +), CAediting_805895(35218763, +), CAediting_805896(35221807, +), CAediting_805897(35224499, +), CAediting_805898(35224535, +), CAediting_805899(35224559, +), CAediting_805900(35224560, +), CAediting_805901(35224561, +), CAediting_805902(35224575, +), CAediting_805903(35224586, +), CAediting_805904(35224600, +), CAediting_805905(35224633, +), CAediting_805906(35224643, +), CAediting_805907(35224646, +), CAediting_805908(35224657, +), CAediting_805909(35224701, +), CAediting_805910(35225555, +), CAediting_805911(35225562, +), CAediting_805912(35225588, +), CAediting_805913(35225592, +), CAediting_805914(35225616, +), CAediting_805915(35225639, +), CAediting_805916(35225640, +), CAediting_805917(35225641, +), CAediting_805918(35225646, +), CAediting_805919(35225665, +), CAediting_805920(35225666, +), CAediting_805921(35225674, +), CAediting_805922(35225697, +), CAediting_805923(35225702, +), CAediting_805924(35225723, +), CAediting_805925(35225737, +), CAediting_805926(35225738, +), CAediting_805927(35225749, +), CAediting_805928(35226802, +), CAediting_805929(35226904, +), CAediting_805930(35226906, +), CAediting_805931(35226949, +), CAediting_805932(35226954, +), CAediting_805933(35226978, +), CAediting_805934(35226988, +), CAediting_805935(35226989, +), CAediting_805936(35227014, +), CAediting_805937(35227066, +), CAediting_805938(35227079, +), CAediting_805939(35227089, +), CAediting_805940(35227125, +), CAediting_805941(35227126, +), CAediting_805942(35227170, +), CAediting_805943(35227206, +), CAediting_805944(35227217, +), CAediting_805945(35227255, +), CAediting_805946(35227285, +), CAediting_805947(35227286, +), CAediting_805948(35227290, +), CAediting_805949(35227298, +), CAediting_805950(35227315, +), CAediting_805951(35227316, +), CAediting_805952(35227319, +), CAediting_805953(35227320, +), CAediting_805954(35227325, +), CAediting_805955(35227333, +), CAediting_805956(35227360, +), CAediting_805957(35227371, +), CAediting_805958(35227421, +), CAediting_805959(35228861, +),

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RNA editing positional annotations for CD44 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_805861chr11_35187018_+ncRNA_intronic
CAediting_805862chr11_35187023_+ncRNA_intronic
CAediting_805863chr11_35187053_+ncRNA_intronic
CAediting_805864chr11_35187176_+ncRNA_intronic
CAediting_805865chr11_35187887_+ncRNA_intronic
CAediting_805866chr11_35187914_+ncRNA_intronic
CAediting_805867chr11_35187939_+ncRNA_intronic
CAediting_805868chr11_35187940_+ncRNA_intronic
CAediting_805869chr11_35187943_+ncRNA_intronic
CAediting_805870chr11_35187944_+ncRNA_intronic
CAediting_805871chr11_35187967_+ncRNA_intronic
CAediting_805872chr11_35187979_+ncRNA_intronic
CAediting_805873chr11_35188817_+ncRNA_intronic
CAediting_805874chr11_35188823_+ncRNA_intronic
CAediting_805875chr11_35188834_+ncRNA_intronic
CAediting_805876chr11_35198701_+ncRNA_intronic
CAediting_805877chr11_35198717_+ncRNA_intronic
CAediting_805878chr11_35198724_+ncRNA_intronic
CAediting_805879chr11_35198795_+ncRNA_intronic
CAediting_805880chr11_35198952_+ncRNA_intronic
CAediting_805881chr11_35215642_+ncRNA_intronic
CAediting_805882chr11_35216773_+ncRNA_intronic
CAediting_805883chr11_35216802_+ncRNA_intronic
CAediting_805884chr11_35216806_+ncRNA_intronic
CAediting_805885chr11_35216843_+ncRNA_intronic
CAediting_805886chr11_35218398_+ncRNA_intronic
CAediting_805887chr11_35218494_+ncRNA_intronic
CAediting_805888chr11_35218549_+ncRNA_intronic
CAediting_805889chr11_35218722_+ncRNA_intronic
CAediting_805890chr11_35218724_+ncRNA_intronic
CAediting_805891chr11_35218725_+ncRNA_intronic
CAediting_805892chr11_35218729_+ncRNA_intronic
CAediting_805893chr11_35218744_+ncRNA_intronic
CAediting_805894chr11_35218751_+ncRNA_intronic
CAediting_805895chr11_35218763_+ncRNA_intronic
CAediting_805896chr11_35221807_+ncRNA_intronic
CAediting_805897chr11_35224499_+ncRNA_intronic
CAediting_805898chr11_35224535_+ncRNA_intronic
CAediting_805899chr11_35224559_+ncRNA_intronic
CAediting_805900chr11_35224560_+ncRNA_intronic
CAediting_805901chr11_35224561_+ncRNA_intronic
CAediting_805902chr11_35224575_+ncRNA_intronic
CAediting_805903chr11_35224586_+ncRNA_intronic
CAediting_805904chr11_35224600_+ncRNA_intronic
CAediting_805905chr11_35224633_+ncRNA_intronic
CAediting_805906chr11_35224643_+ncRNA_intronic
CAediting_805907chr11_35224646_+ncRNA_intronic
CAediting_805908chr11_35224657_+ncRNA_intronic
CAediting_805909chr11_35224701_+ncRNA_intronic
CAediting_805910chr11_35225555_+ncRNA_intronic
CAediting_805911chr11_35225562_+ncRNA_intronic
CAediting_805912chr11_35225588_+ncRNA_intronic
CAediting_805913chr11_35225592_+ncRNA_intronic
CAediting_805914chr11_35225616_+ncRNA_intronic
CAediting_805915chr11_35225639_+ncRNA_intronic
CAediting_805916chr11_35225640_+ncRNA_intronic
CAediting_805917chr11_35225641_+ncRNA_intronic
CAediting_805918chr11_35225646_+ncRNA_intronic
CAediting_805919chr11_35225665_+ncRNA_intronic
CAediting_805920chr11_35225666_+ncRNA_intronic
CAediting_805921chr11_35225674_+ncRNA_intronic
CAediting_805922chr11_35225697_+ncRNA_intronic
CAediting_805923chr11_35225702_+ncRNA_intronic
CAediting_805924chr11_35225723_+ncRNA_intronic
CAediting_805925chr11_35225737_+ncRNA_intronic
CAediting_805926chr11_35225738_+ncRNA_intronic
CAediting_805927chr11_35225749_+ncRNA_intronic
CAediting_805928chr11_35226802_+ncRNA_intronic
CAediting_805929chr11_35226904_+ncRNA_intronic
CAediting_805930chr11_35226906_+ncRNA_intronic
CAediting_805931chr11_35226949_+ncRNA_intronic
CAediting_805932chr11_35226954_+ncRNA_intronic
CAediting_805933chr11_35226978_+ncRNA_intronic
CAediting_805934chr11_35226988_+ncRNA_intronic
CAediting_805935chr11_35226989_+ncRNA_intronic
CAediting_805936chr11_35227014_+ncRNA_intronic
CAediting_805937chr11_35227066_+ncRNA_intronic
CAediting_805938chr11_35227079_+ncRNA_intronic
CAediting_805939chr11_35227089_+ncRNA_intronic
CAediting_805940chr11_35227125_+ncRNA_intronic
CAediting_805941chr11_35227126_+ncRNA_intronic
CAediting_805942chr11_35227170_+ncRNA_intronic
CAediting_805943chr11_35227206_+ncRNA_intronic
CAediting_805944chr11_35227217_+ncRNA_intronic
CAediting_805945chr11_35227255_+ncRNA_intronic
CAediting_805946chr11_35227285_+ncRNA_intronic
CAediting_805947chr11_35227286_+ncRNA_intronic
CAediting_805948chr11_35227290_+ncRNA_intronic
CAediting_805949chr11_35227298_+ncRNA_intronic
CAediting_805950chr11_35227315_+ncRNA_intronic
CAediting_805951chr11_35227316_+ncRNA_intronic
CAediting_805952chr11_35227319_+ncRNA_intronic
CAediting_805953chr11_35227320_+ncRNA_intronic
CAediting_805954chr11_35227325_+ncRNA_intronic
CAediting_805955chr11_35227333_+ncRNA_intronic
CAediting_805956chr11_35227360_+ncRNA_intronic
CAediting_805957chr11_35227371_+ncRNA_intronic
CAediting_805958chr11_35227421_+ncRNA_intronic
CAediting_805959chr11_35228861_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_805861chr11_35187018_+SINEAluAluSx1
CAediting_805862chr11_35187023_+SINEAluAluSx1
CAediting_805863chr11_35187053_+SINEAluAluSx1
CAediting_805864chr11_35187176_+SINEAluAluSx1
CAediting_805866chr11_35187914_+SINEAluAluJo
CAediting_805867chr11_35187939_+SINEAluAluJo
CAediting_805868chr11_35187940_+SINEAluAluJo
CAediting_805869chr11_35187943_+SINEAluAluJo
CAediting_805870chr11_35187944_+SINEAluAluJo
CAediting_805871chr11_35187967_+SINEAluAluJo
CAediting_805872chr11_35187979_+SINEAluAluJo
CAediting_805873chr11_35188817_+SINEAluAluSx
CAediting_805874chr11_35188823_+SINEAluAluSx
CAediting_805875chr11_35188834_+SINEAluAluSx
CAediting_805876chr11_35198701_+SINEAluAluY
CAediting_805877chr11_35198717_+SINEAluAluY
CAediting_805878chr11_35198724_+SINEAluAluY
CAediting_805879chr11_35198795_+SINEAluAluY
CAediting_805880chr11_35198952_+SINEAluAluY
CAediting_805881chr11_35215642_+SINEAluAluSg
CAediting_805882chr11_35216773_+DNAhAT-CharlieMER5A1
CAediting_805883chr11_35216802_+DNAhAT-CharlieMER5A1
CAediting_805884chr11_35216806_+DNAhAT-CharlieMER5A1
CAediting_805885chr11_35216843_+DNAhAT-CharlieMER5A1
CAediting_805886chr11_35218398_+SINEAluAluSc
CAediting_805887chr11_35218494_+SINEAluAluSc
CAediting_805888chr11_35218549_+SINEAluAluSc
CAediting_805889chr11_35218722_+DNAhAT-CharlieMER5A1
CAediting_805890chr11_35218724_+DNAhAT-CharlieMER5A1
CAediting_805891chr11_35218725_+DNAhAT-CharlieMER5A1
CAediting_805892chr11_35218729_+DNAhAT-CharlieMER5A1
CAediting_805893chr11_35218744_+DNAhAT-CharlieMER5A1
CAediting_805894chr11_35218751_+DNAhAT-CharlieMER5A1
CAediting_805895chr11_35218763_+DNAhAT-CharlieMER5A1
CAediting_805896chr11_35221807_+DNAhAT-CharlieMER5A1
CAediting_805897chr11_35224499_+SINEAluAluJb
CAediting_805898chr11_35224535_+SINEAluAluJb
CAediting_805899chr11_35224559_+SINEAluAluJb
CAediting_805900chr11_35224560_+SINEAluAluJb
CAediting_805901chr11_35224561_+SINEAluAluJb
CAediting_805902chr11_35224575_+SINEAluAluJb
CAediting_805903chr11_35224586_+SINEAluAluJb
CAediting_805904chr11_35224600_+SINEAluAluJb
CAediting_805905chr11_35224633_+SINEAluAluJb
CAediting_805906chr11_35224643_+SINEAluAluJb
CAediting_805907chr11_35224646_+SINEAluAluJb
CAediting_805908chr11_35224657_+SINEAluAluJb
CAediting_805909chr11_35224701_+SINEAluAluJb
CAediting_805910chr11_35225555_+SINEAluAluSx1
CAediting_805911chr11_35225562_+SINEAluAluSx1
CAediting_805912chr11_35225588_+SINEAluAluSx1
CAediting_805913chr11_35225592_+SINEAluAluSx1
CAediting_805914chr11_35225616_+SINEAluAluSx1
CAediting_805915chr11_35225639_+SINEAluAluSx1
CAediting_805916chr11_35225640_+SINEAluAluSx1
CAediting_805917chr11_35225641_+SINEAluAluSx1
CAediting_805918chr11_35225646_+SINEAluAluSx1
CAediting_805919chr11_35225665_+SINEAluAluSx1
CAediting_805920chr11_35225666_+SINEAluAluSx1
CAediting_805921chr11_35225674_+SINEAluAluSx1
CAediting_805922chr11_35225697_+SINEAluAluSx1
CAediting_805923chr11_35225702_+SINEAluAluSx1
CAediting_805924chr11_35225723_+SINEAluAluSx1
CAediting_805925chr11_35225737_+SINEAluAluSx1
CAediting_805926chr11_35225738_+SINEAluAluSx1
CAediting_805927chr11_35225749_+SINEAluAluSx1
CAediting_805928chr11_35226802_+SINEMIRMIR
CAediting_805929chr11_35226904_+SINEAluAluSz
CAediting_805930chr11_35226906_+SINEAluAluSz
CAediting_805931chr11_35226949_+SINEAluAluSz
CAediting_805932chr11_35226954_+SINEAluAluSz
CAediting_805933chr11_35226978_+SINEAluAluSz
CAediting_805934chr11_35226988_+SINEAluAluSz
CAediting_805935chr11_35226989_+SINEAluAluSz
CAediting_805936chr11_35227014_+SINEAluAluSz
CAediting_805937chr11_35227066_+SINEAluAluSz
CAediting_805938chr11_35227079_+SINEAluAluSz
CAediting_805939chr11_35227089_+SINEAluAluSz
CAediting_805940chr11_35227125_+SINEAluAluSz
CAediting_805941chr11_35227126_+SINEAluAluSz
CAediting_805942chr11_35227170_+SINEAluAluSz
CAediting_805943chr11_35227206_+SINEAluAluJb
CAediting_805944chr11_35227217_+SINEAluAluJb
CAediting_805945chr11_35227255_+SINEAluAluJb
CAediting_805946chr11_35227285_+SINEAluAluJb
CAediting_805947chr11_35227286_+SINEAluAluJb
CAediting_805948chr11_35227290_+SINEAluAluJb
CAediting_805949chr11_35227298_+SINEAluAluJb
CAediting_805950chr11_35227315_+SINEAluAluJb
CAediting_805951chr11_35227316_+SINEAluAluJb
CAediting_805952chr11_35227319_+SINEAluAluJb
CAediting_805953chr11_35227320_+SINEAluAluJb
CAediting_805954chr11_35227325_+SINEAluAluJb
CAediting_805955chr11_35227333_+SINEAluAluJb
CAediting_805956chr11_35227360_+SINEAluAluJb
CAediting_805957chr11_35227371_+SINEAluAluJb
CAediting_805958chr11_35227421_+SINEAluAluJb
CAediting_805959chr11_35228861_+DNAhAT-CharlieMER5A

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RNA A-to-I editing events in the alternative splicing sites for CD44

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000026508.15.CD44.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000026508.15.CD44.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CD44

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CD44

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for CD44

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000026508.15ENST00000263398hsa-miR-200b-3p35229516352295227mer-m83522950335229523142-10.9
CAediting_393chr1_1167164_+ENSG00000026508.15ENST00000425428hsa-miR-200b-3p35229516352295227mer-m83522950335229523142-10.9
CAediting_393chr1_1167164_+ENSG00000026508.15ENST00000433892hsa-miR-200b-3p35229516352295227mer-m83522950335229523142-10.9
CAediting_393chr1_1167164_+ENSG00000026508.15ENST00000434472hsa-miR-200b-3p35229516352295227mer-m83522950335229523142-10.9
CAediting_393chr1_1167164_+ENSG00000026508.15ENST00000525469hsa-miR-200b-3p35229516352295227mer-m83522950335229523142-10.9
CAediting_1229415chr17_67471547_+ENSG00000026508.15ENST00000263398hsa-miR-548aa35230699352307068mer-1a3523068335230706162-15.84
CAediting_1229415chr17_67471547_+ENSG00000026508.15ENST00000263398hsa-miR-548aa35231964352319707mer-m83523194435231971149-14.91
CAediting_1160181chr17_7017644_-ENSG00000026508.15ENST00000263398hsa-miR-195-3p35231639352316457mer-m83523162535231646145-10.71
CAediting_1351755chr19_40282625_-ENSG00000026508.15ENST00000263398hsa-miR-64135231870352318756mer3523185535231876142-14.64
CAediting_396018chr5_1062918_-ENSG00000026508.15ENST00000263398hsa-miR-463535231687352316926mer3523167335231693140-17.59
CAediting_86358chr1_109598906_+ENSG00000026508.15ENST00000425428hsa-miR-197-5p35214866352148727mer-m83521485135214873151-19.71
CAediting_1229415chr17_67471547_+ENSG00000026508.15ENST00000425428hsa-miR-548aa35221686352216927mer-m83522166935221693140-10.21
CAediting_1229413chr17_67471544_+ENSG00000026508.15ENST00000442151hsa-miR-548aa35222803352228097mer-m83522278235222810151-13.16

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1229414chr17_67471546_+ENSG00000026508.15ENST00000263398hsa-miR-548aa35231422352314287mer-m83523140435231429146-8.91
CAediting_1229415chr17_67471547_+ENSG00000026508.15ENST00000263398hsa-miR-548aa35231422352314287mer-m83523140435231429146-8.91
CAediting_1229414chr17_67471546_+ENSG00000026508.15ENST00000263398hsa-miR-548aa35232278352322847mer-m83523226135232285142-8.76
CAediting_1229415chr17_67471547_+ENSG00000026508.15ENST00000263398hsa-miR-548aa35232278352322847mer-m83523226135232285142-8.76
CAediting_1351755chr19_40282625_-ENSG00000026508.15ENST00000263398hsa-miR-64135230447352304548mer-1a3523043435230454149-13.69
CAediting_1351755chr19_40282625_-ENSG00000026508.15ENST00000263398hsa-miR-64135232161352321677mer-m83523214435232168151-12.72
CAediting_1229413chr17_67471544_+ENSG00000026508.15ENST00000442151hsa-miR-548aa35222935352229417mer-m83522291735222942141-10.1

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CD44

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for CD44

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LAMLCAediting_805884chr11_35216806_+....0.04822971967772260.203235545214976

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Relation with cancer stages for CD44

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for CD44

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LAMLCAediting_805889chr11_35218722_+0.003104911260086270.0088245431.9512

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RelatedDrugs for CD44

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
CD44P16070DB08818Hyaluronic acidCD44 antigen SmallMoleculeDrugapproved|vet_approved

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RelatedDiseases for CD44

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
CD44C0023487Acute Promyelocytic Leukemia2CTD_human
CD44C0009405Hereditary Nonpolyposis Colorectal Neoplasms1CTD_human
CD44C0011616Contact Dermatitis1CTD_human
CD44C0017661IGA Glomerulonephritis1CTD_human
CD44C0022660Kidney Failure, Acute1CTD_human
CD44C0023467Leukemia, Myelocytic, Acute1CTD_human
CD44C0024623Malignant neoplasm of stomach1CTD_human
CD44C0024668Mammary Neoplasms, Experimental1CTD_human
CD44C0026998Acute Myeloid Leukemia, M11CTD_human
CD44C0027627Neoplasm Metastasis1CTD_human
CD44C0027746Nerve Degeneration1CTD_human
CD44C0030297Pancreatic Neoplasm1CTD_human
CD44C0032580Adenomatous Polyposis Coli1CTD_human
CD44C0037274Dermatologic disorders1CTD_human
CD44C0038356Stomach Neoplasms1CTD_human
CD44C0042900Vitiligo1CTD_human
CD44C0162351Contact hypersensitivity1CTD_human
CD44C0274861Arsenic Poisoning, Inorganic1CTD_human
CD44C0274862Nervous System, Organic Arsenic Poisoning1CTD_human
CD44C0311375Arsenic Poisoning1CTD_human
CD44C0346647Malignant neoplasm of pancreas1CTD_human
CD44C0751851Arsenic Encephalopathy1CTD_human
CD44C0751852Arsenic Induced Polyneuropathy1CTD_human
CD44C1333990Hereditary Nonpolyposis Colorectal Cancer1CTD_human
CD44C1565662Acute Kidney Insufficiency1CTD_human
CD44C1708349Hereditary Diffuse Gastric Cancer1CTD_human
CD44C1879321Acute Myeloid Leukemia (AML-M2)1CTD_human
CD44C2609414Acute kidney injury1CTD_human
CD44C2713442Polyposis, Adenomatous Intestinal1CTD_human
CD44C2713443Familial Intestinal Polyposis1CTD_human
CD44C4552100Lynch Syndrome1CTD_human