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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: PGS1 (CAeditome ID:9489)

Gene summary for PGS1

check button Gene summary
Gene informationGene symbol

PGS1

Gene ID

9489

Gene namephosphatidylglycerophosphate synthase 1
Synonyms-
Cytomap

17q25.3

Type of geneprotein-coding
DescriptionCDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrialPGP synthase 1
Modification date20210518
UniProtAcc

Q32NB8

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
PGS1

GO:0005783

CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial

0000054


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RNA A-to-I events for PGS1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000087157.17
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1242740(78379611, +), CAediting_1242741(78379676, +), CAediting_1242742(78379941, +), CAediting_1242743(78380481, +), CAediting_1242744(78382699, +), CAediting_1242745(78391082, +), CAediting_1242746(78393904, +), CAediting_1242747(78393974, +), CAediting_1242748(78393998, +), CAediting_1242749(78394007, +), CAediting_1242750(78394041, +), CAediting_1242751(78394045, +), CAediting_1242752(78394061, +), CAediting_1242753(78394065, +), CAediting_1242754(78394078, +), CAediting_1242755(78394084, +), CAediting_1242756(78394092, +), CAediting_1242757(78394093, +), CAediting_1242758(78395838, +), CAediting_1242759(78395856, +), CAediting_1242760(78400556, +), CAediting_1242761(78401190, +), CAediting_1242762(78401235, +), CAediting_1242763(78401236, +), CAediting_1242764(78402597, +), CAediting_1242765(78404340, +), CAediting_1242766(78404343, +), CAediting_1242767(78404346, +), CAediting_1242768(78404356, +), CAediting_1242769(78404384, +), CAediting_1242770(78404410, +), CAediting_1242771(78404420, +), CAediting_1242772(78404422, +), CAediting_1242773(78404477, +), CAediting_1242774(78404480, +), CAediting_1242775(78404691, +), CAediting_1242776(78404725, +), CAediting_1242777(78404765, +), CAediting_1242778(78404790, +), CAediting_1242779(78404800, +), CAediting_1242780(78404860, +), CAediting_1242781(78405127, +), CAediting_1242782(78405181, +), CAediting_1242783(78405198, +), CAediting_1242784(78406129, +), CAediting_1242785(78406171, +), CAediting_1242786(78406197, +), CAediting_1242787(78406259, +), CAediting_1242788(78409878, +), CAediting_1242789(78409929, +), CAediting_1242790(78409946, +), CAediting_1242791(78409949, +), CAediting_1242792(78409991, +), CAediting_1242793(78410056, +), CAediting_1242794(78410683, +), CAediting_1242795(78411983, +), CAediting_1242796(78415447, +), CAediting_1242797(78419231, +), CAediting_1242798(78419246, +), CAediting_1242799(78419263, +), CAediting_1242800(78422520, +), CAediting_1242801(78422522, +), CAediting_1242802(78422542, +), CAediting_1242803(78422549, +), CAediting_1242804(78422579, +), CAediting_1242805(78422584, +), CAediting_1242806(78422589, +), CAediting_1242807(78422597, +), CAediting_1242808(78422598, +), CAediting_1242809(78422602, +), CAediting_1242810(78422615, +), CAediting_1242811(78422627, +), CAediting_1242812(78422634, +), CAediting_1242813(78422637, +), CAediting_1242814(78422639, +), CAediting_1242815(78422643, +), CAediting_1242816(78422645, +), CAediting_1242817(78422649, +), CAediting_1242818(78422650, +), CAediting_1242819(78422662, +), CAediting_1242820(78422663, +), CAediting_1242821(78422672, +), CAediting_1242822(78422683, +), CAediting_1242823(78422685, +), CAediting_1242824(78422687, +), CAediting_1242825(78422689, +), CAediting_1242826(78422700, +), CAediting_1242827(78422709, +), CAediting_1242828(78422720, +), CAediting_1242829(78422721, +), CAediting_1242830(78422722, +), CAediting_1242831(78422735, +), CAediting_1242832(78422738, +), CAediting_1242833(78422758, +), CAediting_1242834(78422760, +), CAediting_1242835(78422767, +), CAediting_1242836(78422776, +), CAediting_1242837(78422805, +), CAediting_1242838(78422806, +), CAediting_1242839(78422812, +), CAediting_1242840(78422822, +), CAediting_1242841(78422824, +), CAediting_1242842(78422832, +), CAediting_1242843(78422834, +), CAediting_1242844(78422840, +), CAediting_1242845(78422841, +), CAediting_1242846(78422872, +), CAediting_1242847(78422873, +), CAediting_1242848(78422876, +), CAediting_1242849(78422881, +), CAediting_1242850(78422886, +), CAediting_1242851(78422888, +), CAediting_1242852(78422897, +), CAediting_1242853(78422900, +), CAediting_1242854(78422909, +), CAediting_1242855(78422910, +), CAediting_1242856(78422912, +), CAediting_1242857(78422920, +), CAediting_1242858(78422925, +), CAediting_1242859(78422931, +), CAediting_1242860(78422935, +), CAediting_1242861(78422936, +), CAediting_1242862(78422937, +), CAediting_1242863(78422938, +), CAediting_1242864(78422942, +), CAediting_1242865(78422944, +), CAediting_1242866(78422945, +), CAediting_1242867(78422975, +), CAediting_1242868(78422976, +), CAediting_1242869(78422981, +), CAediting_1242870(78422985, +), CAediting_1242871(78422992, +), CAediting_1242872(78422998, +), CAediting_1242873(78423008, +), CAediting_1242874(78423021, +), CAediting_1242875(78423037, +), CAediting_1242876(78423048, +), CAediting_1242877(78423063, +), CAediting_1242878(78423068, +), CAediting_1242879(78423087, +), CAediting_1242880(78423088, +), CAediting_1242881(78423089, +),

Top

RNA editing positional annotations for PGS1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1242740chr17_78379611_+ncRNA_intronic
CAediting_1242741chr17_78379676_+ncRNA_intronic
CAediting_1242742chr17_78379941_+ncRNA_intronic
CAediting_1242743chr17_78380481_+ncRNA_intronic
CAediting_1242744chr17_78382699_+exonic
CAediting_1242745chr17_78391082_+ncRNA_intronic
CAediting_1242746chr17_78393904_+ncRNA_intronic
CAediting_1242747chr17_78393974_+ncRNA_intronic
CAediting_1242748chr17_78393998_+ncRNA_intronic
CAediting_1242749chr17_78394007_+ncRNA_intronic
CAediting_1242750chr17_78394041_+ncRNA_intronic
CAediting_1242751chr17_78394045_+ncRNA_intronic
CAediting_1242752chr17_78394061_+ncRNA_intronic
CAediting_1242753chr17_78394065_+ncRNA_intronic
CAediting_1242754chr17_78394078_+ncRNA_intronic
CAediting_1242755chr17_78394084_+ncRNA_intronic
CAediting_1242756chr17_78394092_+ncRNA_intronic
CAediting_1242757chr17_78394093_+ncRNA_intronic
CAediting_1242758chr17_78395838_+ncRNA_intronic
CAediting_1242759chr17_78395856_+ncRNA_intronic
CAediting_1242760chr17_78400556_+ncRNA_intronic
CAediting_1242761chr17_78401190_+ncRNA_intronic
CAediting_1242762chr17_78401235_+ncRNA_intronic
CAediting_1242763chr17_78401236_+ncRNA_intronic
CAediting_1242764chr17_78402597_+ncRNA_intronic
CAediting_1242765chr17_78404340_+ncRNA_intronic
CAediting_1242766chr17_78404343_+ncRNA_intronic
CAediting_1242767chr17_78404346_+ncRNA_intronic
CAediting_1242768chr17_78404356_+ncRNA_intronic
CAediting_1242769chr17_78404384_+ncRNA_intronic
CAediting_1242770chr17_78404410_+ncRNA_intronic
CAediting_1242771chr17_78404420_+ncRNA_intronic
CAediting_1242772chr17_78404422_+ncRNA_intronic
CAediting_1242773chr17_78404477_+ncRNA_intronic
CAediting_1242774chr17_78404480_+ncRNA_intronic
CAediting_1242775chr17_78404691_+ncRNA_intronic
CAediting_1242776chr17_78404725_+ncRNA_intronic
CAediting_1242777chr17_78404765_+ncRNA_intronic
CAediting_1242778chr17_78404790_+ncRNA_intronic
CAediting_1242779chr17_78404800_+ncRNA_intronic
CAediting_1242780chr17_78404860_+ncRNA_intronic
CAediting_1242781chr17_78405127_+ncRNA_intronic
CAediting_1242782chr17_78405181_+ncRNA_intronic
CAediting_1242783chr17_78405198_+ncRNA_intronic
CAediting_1242784chr17_78406129_+ncRNA_intronic
CAediting_1242785chr17_78406171_+ncRNA_intronic
CAediting_1242786chr17_78406197_+ncRNA_intronic
CAediting_1242787chr17_78406259_+ncRNA_intronic
CAediting_1242788chr17_78409878_+ncRNA_intronic
CAediting_1242789chr17_78409929_+ncRNA_intronic
CAediting_1242790chr17_78409946_+ncRNA_intronic
CAediting_1242791chr17_78409949_+ncRNA_intronic
CAediting_1242792chr17_78409991_+ncRNA_intronic
CAediting_1242793chr17_78410056_+ncRNA_intronic
CAediting_1242794chr17_78410683_+ncRNA_intronic
CAediting_1242795chr17_78411983_+ncRNA_intronic
CAediting_1242796chr17_78415447_+ncRNA_intronic
CAediting_1242797chr17_78419231_+ncRNA_intronic
CAediting_1242798chr17_78419246_+ncRNA_intronic
CAediting_1242799chr17_78419263_+ncRNA_intronic
CAediting_1242800chr17_78422520_+ncRNA_intronic
CAediting_1242801chr17_78422522_+ncRNA_intronic
CAediting_1242802chr17_78422542_+ncRNA_intronic
CAediting_1242803chr17_78422549_+ncRNA_intronic
CAediting_1242804chr17_78422579_+ncRNA_intronic
CAediting_1242805chr17_78422584_+ncRNA_intronic
CAediting_1242806chr17_78422589_+ncRNA_intronic
CAediting_1242807chr17_78422597_+ncRNA_intronic
CAediting_1242808chr17_78422598_+ncRNA_intronic
CAediting_1242809chr17_78422602_+ncRNA_intronic
CAediting_1242810chr17_78422615_+ncRNA_intronic
CAediting_1242811chr17_78422627_+ncRNA_intronic
CAediting_1242812chr17_78422634_+ncRNA_intronic
CAediting_1242813chr17_78422637_+ncRNA_intronic
CAediting_1242814chr17_78422639_+ncRNA_intronic
CAediting_1242815chr17_78422643_+ncRNA_intronic
CAediting_1242816chr17_78422645_+ncRNA_intronic
CAediting_1242817chr17_78422649_+ncRNA_intronic
CAediting_1242818chr17_78422650_+ncRNA_intronic
CAediting_1242819chr17_78422662_+ncRNA_intronic
CAediting_1242820chr17_78422663_+ncRNA_intronic
CAediting_1242821chr17_78422672_+ncRNA_intronic
CAediting_1242822chr17_78422683_+ncRNA_intronic
CAediting_1242823chr17_78422685_+ncRNA_intronic
CAediting_1242824chr17_78422687_+ncRNA_intronic
CAediting_1242825chr17_78422689_+ncRNA_intronic
CAediting_1242826chr17_78422700_+ncRNA_intronic
CAediting_1242827chr17_78422709_+ncRNA_intronic
CAediting_1242828chr17_78422720_+ncRNA_intronic
CAediting_1242829chr17_78422721_+ncRNA_intronic
CAediting_1242830chr17_78422722_+ncRNA_intronic
CAediting_1242831chr17_78422735_+ncRNA_intronic
CAediting_1242832chr17_78422738_+ncRNA_intronic
CAediting_1242833chr17_78422758_+ncRNA_intronic
CAediting_1242834chr17_78422760_+ncRNA_intronic
CAediting_1242835chr17_78422767_+ncRNA_intronic
CAediting_1242836chr17_78422776_+ncRNA_intronic
CAediting_1242837chr17_78422805_+ncRNA_intronic
CAediting_1242838chr17_78422806_+ncRNA_intronic
CAediting_1242839chr17_78422812_+ncRNA_intronic
CAediting_1242840chr17_78422822_+ncRNA_intronic
CAediting_1242841chr17_78422824_+ncRNA_intronic
CAediting_1242842chr17_78422832_+ncRNA_intronic
CAediting_1242843chr17_78422834_+ncRNA_intronic
CAediting_1242844chr17_78422840_+ncRNA_intronic
CAediting_1242845chr17_78422841_+ncRNA_intronic
CAediting_1242846chr17_78422872_+ncRNA_intronic
CAediting_1242847chr17_78422873_+ncRNA_intronic
CAediting_1242848chr17_78422876_+ncRNA_intronic
CAediting_1242849chr17_78422881_+ncRNA_intronic
CAediting_1242850chr17_78422886_+ncRNA_intronic
CAediting_1242851chr17_78422888_+ncRNA_intronic
CAediting_1242852chr17_78422897_+ncRNA_intronic
CAediting_1242853chr17_78422900_+ncRNA_intronic
CAediting_1242854chr17_78422909_+ncRNA_intronic
CAediting_1242855chr17_78422910_+ncRNA_intronic
CAediting_1242856chr17_78422912_+ncRNA_intronic
CAediting_1242857chr17_78422920_+ncRNA_intronic
CAediting_1242858chr17_78422925_+ncRNA_intronic
CAediting_1242859chr17_78422931_+ncRNA_intronic
CAediting_1242860chr17_78422935_+ncRNA_intronic
CAediting_1242861chr17_78422936_+ncRNA_intronic
CAediting_1242862chr17_78422937_+ncRNA_intronic
CAediting_1242863chr17_78422938_+ncRNA_intronic
CAediting_1242864chr17_78422942_+ncRNA_intronic
CAediting_1242865chr17_78422944_+ncRNA_intronic
CAediting_1242866chr17_78422945_+ncRNA_intronic
CAediting_1242867chr17_78422975_+ncRNA_intronic
CAediting_1242868chr17_78422976_+ncRNA_intronic
CAediting_1242869chr17_78422981_+ncRNA_intronic
CAediting_1242870chr17_78422985_+ncRNA_intronic
CAediting_1242871chr17_78422992_+ncRNA_intronic
CAediting_1242872chr17_78422998_+ncRNA_intronic
CAediting_1242873chr17_78423008_+ncRNA_intronic
CAediting_1242874chr17_78423021_+ncRNA_intronic
CAediting_1242875chr17_78423037_+ncRNA_intronic
CAediting_1242876chr17_78423048_+ncRNA_intronic
CAediting_1242877chr17_78423063_+ncRNA_intronic
CAediting_1242878chr17_78423068_+ncRNA_intronic
CAediting_1242879chr17_78423087_+ncRNA_intronic
CAediting_1242880chr17_78423088_+ncRNA_intronic
CAediting_1242881chr17_78423089_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1242740chr17_78379611_+SINEAluAluSq2
CAediting_1242741chr17_78379676_+SINEAluAluSq2
CAediting_1242742chr17_78379941_+SINEAluAluSp
CAediting_1242744chr17_78382699_+SINEAluAluY
CAediting_1242745chr17_78391082_+SINEAluAluSx1
CAediting_1242746chr17_78393904_+SINEAluAluSx
CAediting_1242747chr17_78393974_+SINEAluAluSx
CAediting_1242748chr17_78393998_+SINEAluAluSx
CAediting_1242749chr17_78394007_+SINEAluAluSx
CAediting_1242750chr17_78394041_+SINEAluAluSx
CAediting_1242751chr17_78394045_+SINEAluAluSx
CAediting_1242752chr17_78394061_+SINEAluAluSx
CAediting_1242753chr17_78394065_+SINEAluAluSx
CAediting_1242754chr17_78394078_+SINEAluAluSx
CAediting_1242755chr17_78394084_+SINEAluAluSx
CAediting_1242756chr17_78394092_+SINEAluAluSx
CAediting_1242757chr17_78394093_+SINEAluAluSx
CAediting_1242758chr17_78395838_+SINEAluAluSz6
CAediting_1242759chr17_78395856_+SINEAluAluSz6
CAediting_1242764chr17_78402597_+SINEAluAluSq2
CAediting_1242765chr17_78404340_+SINEAluAluSz
CAediting_1242766chr17_78404343_+SINEAluAluSz
CAediting_1242767chr17_78404346_+SINEAluAluSz
CAediting_1242768chr17_78404356_+SINEAluAluSz
CAediting_1242769chr17_78404384_+SINEAluAluSz
CAediting_1242770chr17_78404410_+SINEAluAluSz
CAediting_1242771chr17_78404420_+SINEAluAluSz
CAediting_1242772chr17_78404422_+SINEAluAluSz
CAediting_1242773chr17_78404477_+SINEAluAluSz
CAediting_1242774chr17_78404480_+SINEAluAluSz
CAediting_1242775chr17_78404691_+SINEAluAluSp
CAediting_1242776chr17_78404725_+SINEAluAluSp
CAediting_1242777chr17_78404765_+SINEAluAluSp
CAediting_1242778chr17_78404790_+SINEAluAluSp
CAediting_1242779chr17_78404800_+SINEAluAluSp
CAediting_1242780chr17_78404860_+SINEAluAluSp
CAediting_1242781chr17_78405127_+SINEAluAluSg
CAediting_1242782chr17_78405181_+SINEAluAluSg
CAediting_1242783chr17_78405198_+SINEAluAluSg
CAediting_1242784chr17_78406129_+SINEAluAluY
CAediting_1242785chr17_78406171_+SINEAluAluY
CAediting_1242786chr17_78406197_+SINEAluAluY
CAediting_1242787chr17_78406259_+SINEAluAluY
CAediting_1242788chr17_78409878_+SINEAluAluSx
CAediting_1242789chr17_78409929_+SINEAluAluSx
CAediting_1242790chr17_78409946_+SINEAluAluSx
CAediting_1242791chr17_78409949_+SINEAluAluSx
CAediting_1242792chr17_78409991_+SINEAluAluSx
CAediting_1242793chr17_78410056_+SINEAluAluSx
CAediting_1242794chr17_78410683_+SINEAluAluSg
CAediting_1242795chr17_78411983_+SINEAluAluJb
CAediting_1242796chr17_78415447_+SINEAluAluSq2
CAediting_1242797chr17_78419231_+SINEAluAluJb
CAediting_1242798chr17_78419246_+SINEAluAluJb
CAediting_1242799chr17_78419263_+SINEAluAluJb
CAediting_1242800chr17_78422520_+SINEAluAluJb
CAediting_1242801chr17_78422522_+SINEAluAluJb
CAediting_1242802chr17_78422542_+SINEAluAluJb
CAediting_1242803chr17_78422549_+SINEAluAluJb
CAediting_1242804chr17_78422579_+SINEAluAluJb
CAediting_1242805chr17_78422584_+SINEAluAluJb
CAediting_1242806chr17_78422589_+SINEAluAluJb
CAediting_1242807chr17_78422597_+SINEAluAluJb
CAediting_1242808chr17_78422598_+SINEAluAluJb
CAediting_1242809chr17_78422602_+SINEAluAluJb
CAediting_1242810chr17_78422615_+SINEAluAluJb
CAediting_1242811chr17_78422627_+SINEAluAluJb
CAediting_1242812chr17_78422634_+SINEAluAluJb
CAediting_1242813chr17_78422637_+SINEAluAluJb
CAediting_1242814chr17_78422639_+SINEAluAluJb
CAediting_1242815chr17_78422643_+SINEAluAluJb
CAediting_1242816chr17_78422645_+SINEAluAluJb
CAediting_1242817chr17_78422649_+SINEAluAluJb
CAediting_1242818chr17_78422650_+SINEAluAluJb
CAediting_1242819chr17_78422662_+SINEAluAluJb
CAediting_1242820chr17_78422663_+SINEAluAluJb
CAediting_1242821chr17_78422672_+SINEAluAluJb
CAediting_1242822chr17_78422683_+SINEAluAluJb
CAediting_1242823chr17_78422685_+SINEAluAluJb
CAediting_1242824chr17_78422687_+SINEAluAluJb
CAediting_1242825chr17_78422689_+SINEAluAluJb
CAediting_1242826chr17_78422700_+SINEAluAluJb
CAediting_1242827chr17_78422709_+SINEAluAluJb
CAediting_1242828chr17_78422720_+SINEAluAluJb
CAediting_1242829chr17_78422721_+SINEAluAluJb
CAediting_1242830chr17_78422722_+SINEAluAluJb
CAediting_1242831chr17_78422735_+SINEAluAluJb
CAediting_1242832chr17_78422738_+SINEAluAluJb
CAediting_1242833chr17_78422758_+SINEAluAluJb
CAediting_1242834chr17_78422760_+SINEAluAluJb
CAediting_1242835chr17_78422767_+SINEAluAluJb
CAediting_1242840chr17_78422822_+SINEAluAluSq2
CAediting_1242841chr17_78422824_+SINEAluAluSq2
CAediting_1242842chr17_78422832_+SINEAluAluSq2
CAediting_1242843chr17_78422834_+SINEAluAluSq2
CAediting_1242844chr17_78422840_+SINEAluAluSq2
CAediting_1242845chr17_78422841_+SINEAluAluSq2
CAediting_1242846chr17_78422872_+SINEAluAluSq2
CAediting_1242847chr17_78422873_+SINEAluAluSq2
CAediting_1242848chr17_78422876_+SINEAluAluSq2
CAediting_1242849chr17_78422881_+SINEAluAluSq2
CAediting_1242850chr17_78422886_+SINEAluAluSq2
CAediting_1242851chr17_78422888_+SINEAluAluSq2
CAediting_1242852chr17_78422897_+SINEAluAluSq2
CAediting_1242853chr17_78422900_+SINEAluAluSq2
CAediting_1242854chr17_78422909_+SINEAluAluSq2
CAediting_1242855chr17_78422910_+SINEAluAluSq2
CAediting_1242856chr17_78422912_+SINEAluAluSq2
CAediting_1242857chr17_78422920_+SINEAluAluSq2
CAediting_1242858chr17_78422925_+SINEAluAluSq2
CAediting_1242859chr17_78422931_+SINEAluAluSq2
CAediting_1242860chr17_78422935_+SINEAluAluSq2
CAediting_1242861chr17_78422936_+SINEAluAluSq2
CAediting_1242862chr17_78422937_+SINEAluAluSq2
CAediting_1242863chr17_78422938_+SINEAluAluSq2
CAediting_1242864chr17_78422942_+SINEAluAluSq2
CAediting_1242865chr17_78422944_+SINEAluAluSq2
CAediting_1242866chr17_78422945_+SINEAluAluSq2
CAediting_1242867chr17_78422975_+SINEAluAluSq2
CAediting_1242868chr17_78422976_+SINEAluAluSq2
CAediting_1242869chr17_78422981_+SINEAluAluSq2
CAediting_1242870chr17_78422985_+SINEAluAluSq2
CAediting_1242871chr17_78422992_+SINEAluAluSq2
CAediting_1242872chr17_78422998_+SINEAluAluSq2
CAediting_1242873chr17_78423008_+SINEAluAluSq2
CAediting_1242874chr17_78423021_+SINEAluAluSq2
CAediting_1242875chr17_78423037_+SINEAluAluSq2
CAediting_1242876chr17_78423048_+SINEAluAluSq2
CAediting_1242877chr17_78423063_+SINEAluAluSq2
CAediting_1242878chr17_78423068_+SINEAluAluSq2
CAediting_1242879chr17_78423087_+SINEAluAluSq2
CAediting_1242880chr17_78423088_+SINEAluAluSq2
CAediting_1242881chr17_78423089_+SINEAluAluSq2

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RNA A-to-I editing events in the alternative splicing sites for PGS1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000087157.17.PGS1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000087157.17.PGS1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PGS1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
CESC.CAediting_1242833.ENSG00000087157.PGS1.png
Soverview
COAD.CAediting_1242870.ENSG00000087157.PGS1.png
Soverview
KIRC.CAediting_1242813.ENSG00000087157.PGS1.png
Soverview
LUSC.CAediting_1242813.ENSG00000087157.PGS1.png
Soverview
LUSC.CAediting_1242814.ENSG00000087157.PGS1.png
Soverview
SKCM.CAediting_1242814.ENSG00000087157.PGS1.png
Soverview

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Protein coding region RNA A-to-I editings for PGS1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for PGS1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000087157.17ENST00000589425hsa-miR-624-3p78403797784038037mer-m87840378478403804154-13.9
CAediting_846604chr11_93733708_-ENSG00000087157.17ENST00000589425hsa-miR-1304-3p78424143784241497mer-m87842412878424150150-20.28
CAediting_846604chr11_93733708_-ENSG00000087157.17ENST00000589426hsa-miR-1304-3p78424143784241497mer-m87842412878424150150-20.28
CAediting_980496chr14_31014685_-ENSG00000087157.17ENST00000588169hsa-miR-624-3p78403797784038037mer-m87840378478403804154-13.9
CAediting_688080chr9_63819626_+ENSG00000087157.17ENST00000586019hsa-miR-4477b78419827784198348mer-1a7841981378419834166-19.07
CAediting_688080chr9_63819626_+ENSG00000087157.17ENST00000586355hsa-miR-4477b78419827784198348mer-1a7841981378419834166-19.07
CAediting_1229414chr17_67471546_+ENSG00000087157.17ENST00000589425hsa-miR-548aa78403879784038857mer-m87840385878403886142-13.3
CAediting_604450chr7_133034877_-ENSG00000087157.17ENST00000589425hsa-miR-365478404040784040467mer-m87840402978404047149-20.19
CAediting_1229414chr17_67471546_+ENSG00000087157.17ENST00000588169hsa-miR-548aa78403879784038857mer-m87840385878403886142-13.3
CAediting_604450chr7_133034877_-ENSG00000087157.17ENST00000588169hsa-miR-365478404040784040467mer-m87840402978404047149-20.19

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PGS1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for PGS1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_1242801chr17_78422522_+0.01116472723336210.275609102473452....
BRCACAediting_1242801chr17_78422522_+0.03389166959961230.115257844850604....
LUADCAediting_1242801chr17_78422522_+0.01247937753619060.181897087372469....
STADCAediting_1242801chr17_78422522_+0.03072188058413510.18675653341706....
THCACAediting_1242801chr17_78422522_+0.01106564213352510.227459078715379....
BRCACAediting_1242808chr17_78422598_+0.02034002405519170.140619544882152....
SKCMCAediting_1242808chr17_78422598_+0.04751843974134760.225123090880677....
BLCACAediting_1242810chr17_78422615_+0.005408802998691070.219629784764332....
BRCACAediting_1242810chr17_78422615_+0.00144550171457820.140695231597425....
ESCACAediting_1242810chr17_78422615_+0.03731647651145780.187233887394763....
LAMLCAediting_1242810chr17_78422615_+....0.01616689240258410.237649511165266
SKCMCAediting_1242810chr17_78422615_+0.004465657664327460.22507393279127....
BRCACAediting_1242811chr17_78422627_+0.0003874967188490370.187584907142448....
LUADCAediting_1242811chr17_78422627_+0.009187662107131290.179798484249498....
LUSCCAediting_1242811chr17_78422627_+0.01116580472296650.205988381721323....
SKCMCAediting_1242811chr17_78422627_+0.01542113208182180.247915289294322....
THCACAediting_1242813chr17_78422637_+0.009883661281477910.221337253540317....
OVCAediting_1242813chr17_78422637_+2.45095289586551e-050.291478648951005....
LGGCAediting_1242814chr17_78422639_+0.04795828182929380.132598932022482....
LUADCAediting_1242827chr17_78422709_+0.0393245176528220.159642408673786....
BLCACAediting_1242833chr17_78422758_+0.02553408297182010.144757328509056....
LGGCAediting_1242833chr17_78422758_+0.0277909685146520.106237024442767....
BRCACAediting_1242833chr17_78422758_+1.35215053524492e-090.22250514613691....
CESCCAediting_1242833chr17_78422758_+0.04230868079299210.166023730887157....
LUADCAediting_1242833chr17_78422758_+0.0001130314998450460.196761956038419....
GBMCAediting_1242833chr17_78422758_+0.0034501147506780.26604740558258....
KIRPCAediting_1242833chr17_78422758_+0.005193939083829830.196914520675264....
OVCAediting_1242833chr17_78422758_+6.27838861709156e-050.248392243350541....
PCPGCAediting_1242833chr17_78422758_+0.0117560949918180.249809331863406....
SKCMCAediting_1242833chr17_78422758_+0.002493952317987150.198495129259958....
SARCCAediting_1242833chr17_78422758_+0.007641248121574730.226998767502292....
TGCTCAediting_1242833chr17_78422758_+9.93494398385678e-080.468568949048015....
BLCACAediting_1242856chr17_78422912_+..0.03547174980723470.235503540153923..
LGGCAediting_1242856chr17_78422912_+..0.0348896130930330.176577796313919..
BRCACAediting_1242856chr17_78422912_+3.47704020450167e-070.312013706216889....
LUSCCAediting_1242856chr17_78422912_+0.02773977008526560.182190372504149....
GBMCAediting_1242856chr17_78422912_+..0.008529347983153970.259172880417827..
STADCAediting_1242856chr17_78422912_+....0.03286396008382420.182436631045064
KIRPCAediting_1242856chr17_78422912_+..0.002409866643945610.336738015478702..
SKCMCAediting_1242856chr17_78422912_+0.04546569003815760.2614643351499326.58827055259394e-050.495554873450601..
GBMCAediting_1242867chr17_78422975_+..0.004036654117733010.2939154323363..
KIRPCAediting_1242867chr17_78422975_+....0.03942410292507030.252297799321142
BRCACAediting_1242868chr17_78422976_+0.0008951531175501580.335302057290982....
LUSCCAediting_1242868chr17_78422976_+....0.03767867553040260.278489659905519
LUADCAediting_1242870chr17_78422985_+0.001792347317061360.25804750530734....
KIRPCAediting_1242870chr17_78422985_+0.01611434033071470.288761510287346....
OVCAediting_1242870chr17_78422985_+0.0003990222577632960.223567001961613....
BLCACAediting_1242873chr17_78423008_+..0.00164492093340920.404327203392287..
LGGCAediting_1242873chr17_78423008_+..2.62933154456883e-120.507295132383707..
BRCACAediting_1242873chr17_78423008_+..9.28628534620013e-100.369998355847108..
LUADCAediting_1242873chr17_78423008_+0.01535120868314090.211411249468846....
LUSCCAediting_1242873chr17_78423008_+..7.28885581731447e-080.454113470255723..
GBMCAediting_1242873chr17_78423008_+..0.0003203945511124110.374846393637174..
STADCAediting_1242873chr17_78423008_+..0.0005625087231843710.332549646376682..
THCACAediting_1242873chr17_78423008_+..0.004786258920449350.252803806133084..
KIRCCAediting_1242873chr17_78423008_+..5.94732603510486e-070.325561895698621..
KIRPCAediting_1242873chr17_78423008_+..8.41968201964516e-150.654906339261253..
ESCACAediting_1242873chr17_78423008_+..1.67782320000836e-080.592835569674028..
OVCAediting_1242873chr17_78423008_+..0.001603446288825170.256316801387128..
SKCMCAediting_1242873chr17_78423008_+..1.96871122900233e-090.555627439104957..
SARCCAediting_1242873chr17_78423008_+..2.02416417572051e-050.554164175512414..

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Relation with cancer stages for PGS1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_1242813chr17_78422637_+0.0001457648015573220.348361133805707
BLCApathologic_stageCAediting_1242833chr17_78422758_+5.53257868022437e-050.258793264734351
BRCApathologic_stageCAediting_1242808chr17_78422598_+0.04834270650291080.120725063967793
BRCApathologic_stageCAediting_1242833chr17_78422758_+0.004475383377590720.106413520880889
CESCclinical_stageCAediting_1242813chr17_78422637_+0.0104757788428333-0.317883448987292
ESCAclinical_stageCAediting_1242814chr17_78422639_+0.0252733598560495-0.333281727057459
ESCApathologic_stageCAediting_1242808chr17_78422598_+0.02272361183018720.24130388316134
ESCApathologic_stageCAediting_1242813chr17_78422637_+0.02305852725257640.219578027838205
ESCApathologic_stageCAediting_1242833chr17_78422758_+0.001201494257740810.299617894866855
ESCApathologic_stageCAediting_1242868chr17_78422976_+0.02208011884762950.25409162719954
ESCApathologic_stageCAediting_1242870chr17_78422985_+0.0298644377005230.201760717448317
HNSCpathologic_stageCAediting_1242810chr17_78422615_+0.04396513432603550.277852943288591
KIRCpathologic_stageCAediting_1242801chr17_78422522_+0.001314139182096810.248828570608147
KIRCpathologic_stageCAediting_1242813chr17_78422637_+1.07462763678118e-050.314110893610164
KIRCpathologic_stageCAediting_1242814chr17_78422639_+0.03537178674139340.147414852203135
KIRCpathologic_stageCAediting_1242827chr17_78422709_+0.02111075022968220.179426324559924
KIRCpathologic_stageCAediting_1242833chr17_78422758_+2.82134749458051e-070.279776820233739
KIRCpathologic_stageCAediting_1242856chr17_78422912_+0.02572997357845890.182708210804635
KIRCpathologic_stageCAediting_1242867chr17_78422975_+0.001655296172692630.301978604334307
KIRCpathologic_stageCAediting_1242868chr17_78422976_+0.01097148900636950.326203905627256
KIRPclinical_stageCAediting_1242801chr17_78422522_+0.007243087151455370.423360259091296
KIRPclinical_stageCAediting_1242827chr17_78422709_+0.03886575072844060.399696408015375
KIRPclinical_stageCAediting_1242833chr17_78422758_+0.01221076335661950.219227023052436
KIRPpathologic_stageCAediting_1242801chr17_78422522_+0.001033882144877390.403721607500218
KIRPpathologic_stageCAediting_1242811chr17_78422627_+0.01477411365581280.257676493625377
KIRPpathologic_stageCAediting_1242813chr17_78422637_+0.03255863599219310.20780275229825
KIRPpathologic_stageCAediting_1242814chr17_78422639_+0.03466303174124030.194658547531924
KIRPpathologic_stageCAediting_1242833chr17_78422758_+0.002274836443393540.228611845557869
KIRPpathologic_stageCAediting_1242873chr17_78423008_+0.0386635631556596-0.208177905110708
LUADpathologic_stageCAediting_1242872chr17_78422998_+0.01782986130927920.318404139350194
LUSCpathologic_stageCAediting_1242813chr17_78422637_+0.01222207098208350.177329144175157
LUSCpathologic_stageCAediting_1242814chr17_78422639_+0.01408525296988120.161697569574046
LUSCpathologic_stageCAediting_1242827chr17_78422709_+0.04684773552041660.159919285406063
LUSCpathologic_stageCAediting_1242833chr17_78422758_+1.80343790574463e-050.221200175337306
LUSCpathologic_stageCAediting_1242856chr17_78422912_+0.02640488925031380.183757347084524
OVclinical_stageCAediting_1242801chr17_78422522_+0.01503316601568360.195008782111833
OVclinical_stageCAediting_1242807chr17_78422597_+0.0394337530828702-0.292274419321629
OVclinical_stageCAediting_1242808chr17_78422598_+0.0005767588240325430.254815365897072
OVclinical_stageCAediting_1242856chr17_78422912_+0.00534323043298690.186785595338002
SKCMpathologic_stageCAediting_1242827chr17_78422709_+0.04860828807939820.264769122411666
THCApathologic_stageCAediting_1242808chr17_78422598_+0.002453932981053040.270756735325976
THCApathologic_stageCAediting_1242867chr17_78422975_+0.04184047153732640.242212377855715

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Relation with survival for PGS1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
GBMCAediting_1242811chr17_78422627_+0.01438337124951570.04097480.150133
KIRPCAediting_1242827chr17_78422709_+0.002517157328685290.0187302126597
OVCAediting_1242867chr17_78422975_+0.01010756844118870.01099133.02051

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RelatedDrugs for PGS1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PGS1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource