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Editing gene: SFXN1 (CAeditome ID:94081)

Gene summary for SFXN1

Gene summary

Gene information	Gene symbol	SFXN1
	Gene ID	94081
	Gene name	sideroflexin 1
	Synonyms	SLC56A1\|TCC
	Cytomap	5q35.2
	Type of gene	protein-coding
	Description	sideroflexin-1tricarboxylate carrier protein
	Modification date	20210518
	UniProtAcc	Q9H9B4
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SFXN1	GO:0006730	Sideroflexin-1	30442778
SFXN1	GO:0015194	Sideroflexin-1	30442778
SFXN1	GO:0042945	Sideroflexin-1	30442778
SFXN1	GO:0015825	Sideroflexin-1	30442778
SFXN1	GO:0042942	Sideroflexin-1	30442778
SFXN1	GO:0140300	Sideroflexin-1	30442778
SFXN1	GO:0005739	Sideroflexin-1	0000052
SFXN1	GO:0031305	Sideroflexin-1	30442778

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RNA A-to-I events for SFXN1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000164466.11

RNA A-to-I editing events in Cancer.

CAediting_448871(175477070, +), CAediting_448872(175477103, +), CAediting_448873(175477127, +), CAediting_448874(175477146, +), CAediting_448875(175493132, +), CAediting_448876(175497029, +), CAediting_448877(175497070, +), CAediting_448878(175497073, +), CAediting_448879(175497074, +), CAediting_448880(175497124, +), CAediting_448881(175497141, +), CAediting_448882(175497667, +), CAediting_448883(175497719, +), CAediting_448884(175497783, +), CAediting_448885(175497803, +), CAediting_448886(175497809, +), CAediting_448887(175497827, +), CAediting_448888(175497836, +), CAediting_448889(175497842, +), CAediting_448890(175497851, +), CAediting_448891(175497855, +), CAediting_448892(175499076, +), CAediting_448893(175504389, +), CAediting_448894(175504496, +), CAediting_448895(175507755, +), CAediting_448896(175507762, +), CAediting_448897(175507866, +), CAediting_448898(175507870, +), CAediting_448899(175513039, +), CAediting_448900(175513073, +), CAediting_448901(175513099, +), CAediting_448902(175513122, +), CAediting_448903(175513123, +), CAediting_448904(175513124, +), CAediting_448905(175513125, +), CAediting_448906(175513136, +), CAediting_448907(175513180, +), CAediting_448908(175513189, +), CAediting_448909(175513206, +), CAediting_448910(175513222, +), CAediting_448911(175513265, +), CAediting_448912(175515193, +), CAediting_448913(175515200, +), CAediting_448914(175515203, +), CAediting_448915(175515206, +), CAediting_448916(175515235, +), CAediting_448917(175524025, +), CAediting_448918(175525640, +), CAediting_448919(175527994, +), CAediting_448920(175527999, +), CAediting_448921(175528019, +), CAediting_448922(175528037, +), CAediting_448923(175528049, +), CAediting_448924(175528050, +), CAediting_448925(175528060, +), CAediting_448926(175528062, +), CAediting_448927(175528087, +), CAediting_448928(175528097, +), CAediting_448929(175528103, +), CAediting_448930(175528132, +), CAediting_448931(175528170, +), CAediting_448932(175528192, +), CAediting_448933(175528317, +), CAediting_448934(175529073, +), CAediting_448935(175529082, +), CAediting_448936(175529087, +), CAediting_448937(175529098, +), CAediting_448938(175529117, +), CAediting_448939(175529122, +), CAediting_448940(175529160, +), CAediting_448941(175529161, +), CAediting_448942(175529176, +), CAediting_448943(175529177, +), CAediting_448944(175529178, +), CAediting_448945(175529183, +), CAediting_448946(175529185, +), CAediting_448947(175529187, +), CAediting_448948(175529188, +), CAediting_448949(175529191, +), CAediting_448950(175529195, +), CAediting_448951(175529207, +), CAediting_448952(175529223, +), CAediting_448953(175529227, +), CAediting_448954(175529234, +), CAediting_448955(175529244, +), CAediting_448956(175529247, +), CAediting_448957(175529249, +), CAediting_448958(175529250, +), CAediting_448959(175529266, +), CAediting_448960(175529272, +), CAediting_448961(175529279, +), CAediting_448962(175529283, +), CAediting_448963(175529287, +), CAediting_448964(175529288, +), CAediting_448965(175529303, +), CAediting_448966(175529317, +), CAediting_448967(175529320, +), CAediting_448968(175529321, +), CAediting_448969(175529323, +), CAediting_448970(175529327, +), CAediting_448971(175529348, +), CAediting_448972(175529381, +),

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RNA editing positional annotations for SFXN1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_448871	chr5_175477070_+	UTR5
CAediting_448872	chr5_175477103_+	UTR5
CAediting_448873	chr5_175477127_+	UTR5
CAediting_448874	chr5_175477146_+	UTR5
CAediting_448875	chr5_175493132_+	ncRNA_intronic
CAediting_448876	chr5_175497029_+	ncRNA_intronic
CAediting_448877	chr5_175497070_+	ncRNA_intronic
CAediting_448878	chr5_175497073_+	ncRNA_intronic
CAediting_448879	chr5_175497074_+	ncRNA_intronic
CAediting_448880	chr5_175497124_+	ncRNA_intronic
CAediting_448881	chr5_175497141_+	ncRNA_intronic
CAediting_448882	chr5_175497667_+	ncRNA_intronic
CAediting_448883	chr5_175497719_+	ncRNA_intronic
CAediting_448884	chr5_175497783_+	ncRNA_intronic
CAediting_448885	chr5_175497803_+	ncRNA_intronic
CAediting_448886	chr5_175497809_+	ncRNA_intronic
CAediting_448887	chr5_175497827_+	ncRNA_intronic
CAediting_448888	chr5_175497836_+	ncRNA_intronic
CAediting_448889	chr5_175497842_+	ncRNA_intronic
CAediting_448890	chr5_175497851_+	ncRNA_intronic
CAediting_448891	chr5_175497855_+	ncRNA_intronic
CAediting_448892	chr5_175499076_+	ncRNA_intronic
CAediting_448893	chr5_175504389_+	ncRNA_intronic
CAediting_448894	chr5_175504496_+	ncRNA_intronic
CAediting_448895	chr5_175507755_+	ncRNA_intronic
CAediting_448896	chr5_175507762_+	ncRNA_intronic
CAediting_448897	chr5_175507866_+	ncRNA_intronic
CAediting_448898	chr5_175507870_+	ncRNA_intronic
CAediting_448899	chr5_175513039_+	ncRNA_intronic
CAediting_448900	chr5_175513073_+	ncRNA_intronic
CAediting_448901	chr5_175513099_+	ncRNA_intronic
CAediting_448902	chr5_175513122_+	ncRNA_intronic
CAediting_448903	chr5_175513123_+	ncRNA_intronic
CAediting_448904	chr5_175513124_+	ncRNA_intronic
CAediting_448905	chr5_175513125_+	ncRNA_intronic
CAediting_448906	chr5_175513136_+	ncRNA_intronic
CAediting_448907	chr5_175513180_+	ncRNA_intronic
CAediting_448908	chr5_175513189_+	ncRNA_intronic
CAediting_448909	chr5_175513206_+	ncRNA_intronic
CAediting_448910	chr5_175513222_+	ncRNA_intronic
CAediting_448911	chr5_175513265_+	ncRNA_intronic
CAediting_448912	chr5_175515193_+	intronic
CAediting_448913	chr5_175515200_+	intronic
CAediting_448914	chr5_175515203_+	intronic
CAediting_448915	chr5_175515206_+	intronic
CAediting_448916	chr5_175515235_+	intronic
CAediting_448917	chr5_175524025_+	ncRNA_intronic
CAediting_448918	chr5_175525640_+	ncRNA_intronic
CAediting_448919	chr5_175527994_+	UTR3
CAediting_448920	chr5_175527999_+	UTR3
CAediting_448921	chr5_175528019_+	UTR3
CAediting_448922	chr5_175528037_+	UTR3
CAediting_448923	chr5_175528049_+	UTR3
CAediting_448924	chr5_175528050_+	UTR3
CAediting_448925	chr5_175528060_+	UTR3
CAediting_448926	chr5_175528062_+	UTR3
CAediting_448927	chr5_175528087_+	UTR3
CAediting_448928	chr5_175528097_+	UTR3
CAediting_448929	chr5_175528103_+	UTR3
CAediting_448930	chr5_175528132_+	UTR3
CAediting_448931	chr5_175528170_+	UTR3
CAediting_448932	chr5_175528192_+	UTR3
CAediting_448933	chr5_175528317_+	UTR3
CAediting_448934	chr5_175529073_+	UTR3
CAediting_448935	chr5_175529082_+	UTR3
CAediting_448936	chr5_175529087_+	UTR3
CAediting_448937	chr5_175529098_+	UTR3
CAediting_448938	chr5_175529117_+	UTR3
CAediting_448939	chr5_175529122_+	UTR3
CAediting_448940	chr5_175529160_+	UTR3
CAediting_448941	chr5_175529161_+	UTR3
CAediting_448942	chr5_175529176_+	UTR3
CAediting_448943	chr5_175529177_+	UTR3
CAediting_448944	chr5_175529178_+	UTR3
CAediting_448945	chr5_175529183_+	UTR3
CAediting_448946	chr5_175529185_+	UTR3
CAediting_448947	chr5_175529187_+	UTR3
CAediting_448948	chr5_175529188_+	UTR3
CAediting_448949	chr5_175529191_+	UTR3
CAediting_448950	chr5_175529195_+	UTR3
CAediting_448951	chr5_175529207_+	UTR3
CAediting_448952	chr5_175529223_+	UTR3
CAediting_448953	chr5_175529227_+	UTR3
CAediting_448954	chr5_175529234_+	UTR3
CAediting_448955	chr5_175529244_+	UTR3
CAediting_448956	chr5_175529247_+	UTR3
CAediting_448957	chr5_175529249_+	UTR3
CAediting_448958	chr5_175529250_+	UTR3
CAediting_448959	chr5_175529266_+	UTR3
CAediting_448960	chr5_175529272_+	UTR3
CAediting_448961	chr5_175529279_+	UTR3
CAediting_448962	chr5_175529283_+	UTR3
CAediting_448963	chr5_175529287_+	UTR3
CAediting_448964	chr5_175529288_+	UTR3
CAediting_448965	chr5_175529303_+	UTR3
CAediting_448966	chr5_175529317_+	UTR3
CAediting_448967	chr5_175529320_+	UTR3
CAediting_448968	chr5_175529321_+	UTR3
CAediting_448969	chr5_175529323_+	UTR3
CAediting_448970	chr5_175529327_+	UTR3
CAediting_448971	chr5_175529348_+	UTR3
CAediting_448972	chr5_175529381_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_448871	chr5_175477070_+	SINE	Alu	AluJb
CAediting_448872	chr5_175477103_+	SINE	Alu	AluJb
CAediting_448873	chr5_175477127_+	SINE	Alu	AluJb
CAediting_448874	chr5_175477146_+	SINE	Alu	AluJb
CAediting_448875	chr5_175493132_+	SINE	Alu	AluY
CAediting_448876	chr5_175497029_+	SINE	Alu	AluSx1
CAediting_448877	chr5_175497070_+	SINE	Alu	AluSx1
CAediting_448878	chr5_175497073_+	SINE	Alu	AluSx1
CAediting_448879	chr5_175497074_+	SINE	Alu	AluSx1
CAediting_448880	chr5_175497124_+	SINE	Alu	AluSx1
CAediting_448881	chr5_175497141_+	SINE	Alu	AluSx1
CAediting_448882	chr5_175497667_+	SINE	Alu	AluSq2
CAediting_448883	chr5_175497719_+	SINE	Alu	AluSq2
CAediting_448884	chr5_175497783_+	SINE	Alu	AluSq2
CAediting_448885	chr5_175497803_+	SINE	Alu	AluSq2
CAediting_448886	chr5_175497809_+	SINE	Alu	AluSq2
CAediting_448887	chr5_175497827_+	SINE	Alu	AluSq2
CAediting_448888	chr5_175497836_+	SINE	Alu	AluSq2
CAediting_448889	chr5_175497842_+	SINE	Alu	AluSq2
CAediting_448890	chr5_175497851_+	SINE	Alu	AluSq2
CAediting_448891	chr5_175497855_+	SINE	Alu	AluSq2
CAediting_448892	chr5_175499076_+	SINE	Alu	AluSx
CAediting_448893	chr5_175504389_+	SINE	Alu	AluSx
CAediting_448894	chr5_175504496_+	SINE	Alu	AluSx
CAediting_448895	chr5_175507755_+	SINE	Alu	AluJo
CAediting_448896	chr5_175507762_+	SINE	Alu	AluJo
CAediting_448897	chr5_175507866_+	SINE	Alu	AluJo
CAediting_448898	chr5_175507870_+	SINE	Alu	AluJo
CAediting_448899	chr5_175513039_+	SINE	Alu	AluSx
CAediting_448900	chr5_175513073_+	SINE	Alu	AluSx
CAediting_448901	chr5_175513099_+	SINE	Alu	AluSx
CAediting_448902	chr5_175513122_+	SINE	Alu	AluSx
CAediting_448903	chr5_175513123_+	SINE	Alu	AluSx
CAediting_448904	chr5_175513124_+	SINE	Alu	AluSx
CAediting_448905	chr5_175513125_+	SINE	Alu	AluSx
CAediting_448906	chr5_175513136_+	SINE	Alu	AluSx
CAediting_448907	chr5_175513180_+	SINE	Alu	AluSx
CAediting_448908	chr5_175513189_+	SINE	Alu	AluSx
CAediting_448909	chr5_175513206_+	SINE	Alu	AluSx
CAediting_448910	chr5_175513222_+	SINE	Alu	AluSx
CAediting_448911	chr5_175513265_+	SINE	Alu	AluSx
CAediting_448912	chr5_175515193_+	SINE	Alu	AluJo
CAediting_448913	chr5_175515200_+	SINE	Alu	AluJo
CAediting_448914	chr5_175515203_+	SINE	Alu	AluJo
CAediting_448915	chr5_175515206_+	SINE	Alu	AluJo
CAediting_448916	chr5_175515235_+	SINE	Alu	AluJo
CAediting_448917	chr5_175524025_+	SINE	Alu	AluSx3
CAediting_448918	chr5_175525640_+	SINE	Alu	AluJr
CAediting_448919	chr5_175527994_+	SINE	Alu	AluYc3
CAediting_448920	chr5_175527999_+	SINE	Alu	AluYc3
CAediting_448921	chr5_175528019_+	SINE	Alu	AluYc3
CAediting_448922	chr5_175528037_+	SINE	Alu	AluYc3
CAediting_448923	chr5_175528049_+	SINE	Alu	AluYc3
CAediting_448924	chr5_175528050_+	SINE	Alu	AluYc3
CAediting_448925	chr5_175528060_+	SINE	Alu	AluYc3
CAediting_448926	chr5_175528062_+	SINE	Alu	AluYc3
CAediting_448927	chr5_175528087_+	SINE	Alu	AluYc3
CAediting_448928	chr5_175528097_+	SINE	Alu	AluYc3
CAediting_448929	chr5_175528103_+	SINE	Alu	AluYc3
CAediting_448930	chr5_175528132_+	SINE	Alu	AluYc3
CAediting_448931	chr5_175528170_+	SINE	Alu	AluYc3
CAediting_448932	chr5_175528192_+	SINE	Alu	AluYc3
CAediting_448933	chr5_175528317_+	DNA	TcMar-Tigger	MER2
CAediting_448934	chr5_175529073_+	SINE	Alu	AluSp
CAediting_448935	chr5_175529082_+	SINE	Alu	AluSp
CAediting_448936	chr5_175529087_+	SINE	Alu	AluSp
CAediting_448937	chr5_175529098_+	SINE	Alu	AluSp
CAediting_448938	chr5_175529117_+	SINE	Alu	AluSp
CAediting_448939	chr5_175529122_+	SINE	Alu	AluSp
CAediting_448940	chr5_175529160_+	SINE	Alu	AluSp
CAediting_448941	chr5_175529161_+	SINE	Alu	AluSp
CAediting_448942	chr5_175529176_+	SINE	Alu	AluSp
CAediting_448943	chr5_175529177_+	SINE	Alu	AluSp
CAediting_448944	chr5_175529178_+	SINE	Alu	AluSp
CAediting_448945	chr5_175529183_+	SINE	Alu	AluSp
CAediting_448946	chr5_175529185_+	SINE	Alu	AluSp
CAediting_448947	chr5_175529187_+	SINE	Alu	AluSp
CAediting_448948	chr5_175529188_+	SINE	Alu	AluSp
CAediting_448949	chr5_175529191_+	SINE	Alu	AluSp
CAediting_448950	chr5_175529195_+	SINE	Alu	AluSp
CAediting_448951	chr5_175529207_+	SINE	Alu	AluSp
CAediting_448952	chr5_175529223_+	SINE	Alu	AluSp
CAediting_448953	chr5_175529227_+	SINE	Alu	AluSp
CAediting_448954	chr5_175529234_+	SINE	Alu	AluSp
CAediting_448955	chr5_175529244_+	SINE	Alu	AluSp
CAediting_448956	chr5_175529247_+	SINE	Alu	AluSp
CAediting_448957	chr5_175529249_+	SINE	Alu	AluSp
CAediting_448958	chr5_175529250_+	SINE	Alu	AluSp
CAediting_448959	chr5_175529266_+	SINE	Alu	AluSp
CAediting_448960	chr5_175529272_+	SINE	Alu	AluSp
CAediting_448961	chr5_175529279_+	SINE	Alu	AluSp
CAediting_448962	chr5_175529283_+	SINE	Alu	AluSp
CAediting_448963	chr5_175529287_+	SINE	Alu	AluSp
CAediting_448964	chr5_175529288_+	SINE	Alu	AluSp
CAediting_448965	chr5_175529303_+	SINE	Alu	AluSp
CAediting_448966	chr5_175529317_+	SINE	Alu	AluSp
CAediting_448967	chr5_175529320_+	SINE	Alu	AluSp
CAediting_448968	chr5_175529321_+	SINE	Alu	AluSp
CAediting_448969	chr5_175529323_+	SINE	Alu	AluSp
CAediting_448970	chr5_175529327_+	SINE	Alu	AluSp
CAediting_448971	chr5_175529348_+	SINE	Alu	AluSp

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RNA A-to-I editing events in the alternative splicing sites for SFXN1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000164466.11.SFXN1.

Correlation between RNA A-to-I editing and PSI for ENSG00000164466.11.SFXN1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SFXN1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SFXN1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SFXN1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_448934	chr5_175529073_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3180-3p	175529071	175529076	6mer	175529057	175529077	140.00	-27.38
CAediting_448934	chr5_175529073_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3180-3p	175529071	175529076	6mer	175529057	175529077	140.00	-27.38
CAediting_448934	chr5_175529073_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3180-3p	175529071	175529076	6mer	175529057	175529077	140.00	-27.38
CAediting_448934	chr5_175529073_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4649-5p	175529069	175529075	7mer-m8	175529054	175529076	144.00	-23.11
CAediting_448934	chr5_175529073_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6729-5p	175529069	175529075	7mer-m8	175529057	175529076	144.00	-20.35
CAediting_448935	chr5_175529082_+	ENSG00000164466.11	ENST00000321442	hsa-miR-8052	175529080	175529086	7mer-1a	175529068	175529086	143.00	-28.36
CAediting_448937	chr5_175529098_+	ENSG00000164466.11	ENST00000321442	hsa-miR-10392-3p	175529096	175529103	8mer-1a	175529079	175529103	144.00	-22.69
CAediting_448942	chr5_175529176_+	ENSG00000164466.11	ENST00000321442	hsa-miR-325	175529169	175529176	8mer-1a	175529154	175529176	145.00	-11.62
CAediting_448943	chr5_175529177_+	ENSG00000164466.11	ENST00000321442	hsa-miR-630	175529175	175529182	8mer-1a	175529162	175529182	151.00	-13.49
CAediting_448949	chr5_175529191_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3190-5p	175529189	175529195	7mer-m8	175529177	175529196	143.00	-16.24
CAediting_448949	chr5_175529191_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548s	175529188	175529194	7mer-m8	175529173	175529195	140.00	-11.19
CAediting_448953	chr5_175529227_+	ENSG00000164466.11	ENST00000321442	hsa-miR-1207-3p	175529220	175529226	7mer-m8	175529210	175529227	140.00	-12.56
CAediting_448953	chr5_175529227_+	ENSG00000164466.11	ENST00000321442	hsa-miR-646	175529222	175529228	7mer-m8	175529211	175529229	145.00	-15.97
CAediting_448962	chr5_175529283_+	ENSG00000164466.11	ENST00000321442	hsa-miR-324-3p	175529276	175529282	7mer-m8	175529257	175529283	149.00	-31.20
CAediting_448963	chr5_175529287_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4638-5p	175529282	175529289	8mer-1a	175529270	175529289	146.00	-20.28
CAediting_448964	chr5_175529288_+	ENSG00000164466.11	ENST00000321442	hsa-miR-149-5p	175529281	175529287	7mer-m8	175529262	175529288	155.00	-32.22
CAediting_448917	chr5_175524025_+	ENSG00000164466.11	ENST00000507823	hsa-miR-10400-3p	175524022	175524028	7mer-m8	175524010	175524029	145.00	-23.57
CAediting_448917	chr5_175524025_+	ENSG00000164466.11	ENST00000507823	hsa-miR-4674	175524022	175524028	7mer-m8	175524010	175524029	152.00	-27.30
CAediting_448921	chr5_175528019_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4634	175528016	175528022	7mer-m8	175528008	175528023	149.00	-34.84
CAediting_448923	chr5_175528049_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4268	175528045	175528051	7mer-m8	175528033	175528052	141.00	-17.70
CAediting_448923	chr5_175528049_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6736-3p	175528047	175528053	7mer-m8	175528034	175528054	150.00	-18.76
CAediting_448924	chr5_175528050_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6819-3p	175528046	175528052	7mer-m8	175528033	175528053	140.00	-15.28
CAediting_448924	chr5_175528050_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6849-3p	175528048	175528054	7mer-m8	175528034	175528055	142.00	-17.07
CAediting_448924	chr5_175528050_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6877-3p	175528046	175528052	7mer-m8	175528033	175528053	140.00	-19.86
CAediting_448925	chr5_175528060_+	ENSG00000164466.11	ENST00000321442	hsa-miR-17-3p	175528056	175528062	7mer-m8	175528042	175528063	142.00	-18.85
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548ae-3p	175528085	175528091	7mer-m8	175528072	175528092	141.00	-6.23
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548ae-3p	175528085	175528091	7mer-m8	175528072	175528092	141.00	-6.23
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548ah-3p	175528085	175528091	7mer-m8	175528070	175528092	143.00	-6.87
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548aj-3p	175528085	175528091	7mer-m8	175528072	175528092	141.00	-7.13
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548aj-3p	175528085	175528091	7mer-m8	175528072	175528092	141.00	-7.13
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548am-3p	175528085	175528091	7mer-m8	175528070	175528092	143.00	-6.23
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548aq-3p	175528085	175528091	7mer-m8	175528071	175528092	141.00	-6.30
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548j-3p	175528085	175528091	7mer-m8	175528072	175528092	141.00	-6.23
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548x-3p	175528085	175528091	7mer-m8	175528073	175528092	141.00	-7.13
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548x-3p	175528085	175528091	7mer-m8	175528073	175528092	141.00	-7.13
CAediting_448927	chr5_175528087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-7844-5p	175528083	175528089	7mer-m8	175528069	175528090	164.00	-22.52
CAediting_448928	chr5_175528097_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4801	175528092	175528097	6mer	175528077	175528098	144.00	-14.42
CAediting_448930	chr5_175528132_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4523	175528126	175528132	7mer-m8	175528116	175528133	141.00	-21.52
CAediting_448931	chr5_175528170_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3192-5p	175528163	175528169	7mer-m8	175528147	175528170	156.00	-30.55
CAediting_448931	chr5_175528170_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3620-3p	175528167	175528173	7mer-m8	175528153	175528174	140.00	-15.58
CAediting_448931	chr5_175528170_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4292	175528165	175528171	7mer-m8	175528156	175528172	148.00	-25.77
CAediting_448931	chr5_175528170_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6791-5p	175528165	175528171	7mer-m8	175528148	175528172	162.00	-34.42
CAediting_448931	chr5_175528170_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6852-5p	175528165	175528170	6mer	175528151	175528171	140.00	-26.54
CAediting_448932	chr5_175528192_+	ENSG00000164466.11	ENST00000321442	hsa-miR-662	175528187	175528192	6mer	175528171	175528193	153.00	-32.78
CAediting_448932	chr5_175528192_+	ENSG00000164466.11	ENST00000321442	hsa-miR-663b	175528190	175528196	7mer-m8	175528176	175528197	147.00	-24.10
CAediting_448936	chr5_175529087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-371a-3p	175529085	175529091	7mer-m8	175529070	175529092	145.00	-16.98
CAediting_448939	chr5_175529122_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4726-3p	175529116	175529122	7mer-m8	175529099	175529123	154.00	-27.46
CAediting_448940	chr5_175529160_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6895-3p	175529155	175529161	7mer-m8	175529141	175529162	158.00	-20.36
CAediting_448941	chr5_175529161_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4508	175529159	175529165	7mer-m8	175529150	175529166	140.00	-21.38
CAediting_448941	chr5_175529161_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6815-3p	175529156	175529162	7mer-m8	175529142	175529163	147.00	-20.56
CAediting_448946	chr5_175529185_+	ENSG00000164466.11	ENST00000321442	hsa-miR-578	175529180	175529187	8mer-1a	175529167	175529187	148.00	-9.39
CAediting_448946	chr5_175529185_+	ENSG00000164466.11	ENST00000321442	hsa-miR-643	175529178	175529185	8mer-1a	175529163	175529185	147.00	-13.72
CAediting_448951	chr5_175529207_+	ENSG00000164466.11	ENST00000321442	hsa-miR-1281	175529200	175529206	7mer-m8	175529191	175529207	142.00	-17.94
CAediting_448951	chr5_175529207_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4787-3p	175529203	175529209	7mer-m8	175529189	175529210	158.00	-24.48
CAediting_448951	chr5_175529207_+	ENSG00000164466.11	ENST00000321442	hsa-miR-668-5p	175529201	175529208	8mer-1a	175529190	175529208	140.00	-19.22
CAediting_448954	chr5_175529234_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3943	175529231	175529237	7mer-m8	175529218	175529238	150.00	-22.28
CAediting_448955	chr5_175529244_+	ENSG00000164466.11	ENST00000321442	hsa-miR-1224-3p	175529239	175529246	8mer-1a	175529227	175529246	156.00	-26.03
CAediting_448955	chr5_175529244_+	ENSG00000164466.11	ENST00000321442	hsa-miR-1260a	175529240	175529246	7mer-m8	175529230	175529247	164.00	-28.81
CAediting_448955	chr5_175529244_+	ENSG00000164466.11	ENST00000321442	hsa-miR-1260b	175529240	175529246	7mer-m8	175529229	175529247	161.00	-23.52
CAediting_448955	chr5_175529244_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4713-5p	175529242	175529249	8mer-1a	175529229	175529249	166.00	-33.39
CAediting_448955	chr5_175529244_+	ENSG00000164466.11	ENST00000321442	hsa-miR-532-3p	175529241	175529248	8mer-1a	175529229	175529248	147.00	-19.78
CAediting_448956	chr5_175529247_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3162-3p	175529240	175529246	7mer-m8	175529228	175529247	157.00	-26.24
CAediting_448958	chr5_175529250_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4431	175529246	175529252	7mer-m8	175529231	175529253	144.00	-17.94
CAediting_448959	chr5_175529266_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3943	175529262	175529268	7mer-m8	175529248	175529269	159.00	-28.78
CAediting_448959	chr5_175529266_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6840-5p	175529260	175529266	7mer-m8	175529242	175529267	143.00	-24.27
CAediting_448966	chr5_175529317_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3655	175529315	175529322	8mer-1a	175529304	175529322	155.00	-23.97
CAediting_448968	chr5_175529321_+	ENSG00000164466.11	ENST00000321442	hsa-miR-367-5p	175529314	175529320	7mer-m8	175529300	175529321	143.00	-12.08
CAediting_448969	chr5_175529323_+	ENSG00000164466.11	ENST00000321442	hsa-miR-1249-3p	175529319	175529326	8mer-1a	175529305	175529326	143.00	-18.19
CAediting_448969	chr5_175529323_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6726-3p	175529320	175529327	8mer-1a	175529305	175529327	152.00	-21.44
CAediting_448969	chr5_175529323_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6780b-3p	175529317	175529323	7mer-m8	175529304	175529324	145.00	-15.11
CAediting_448970	chr5_175529327_+	ENSG00000164466.11	ENST00000321442	hsa-miR-572	175529321	175529328	8mer-1a	175529310	175529328	144.00	-24.49
CAediting_448971	chr5_175529348_+	ENSG00000164466.11	ENST00000321442	hsa-miR-627-3p	175529346	175529353	8mer-1a	175529334	175529353	150.00	-13.06
CAediting_448972	chr5_175529381_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3189-5p	175529376	175529382	7mer-m8	175529359	175529383	145.00	-18.76
CAediting_448972	chr5_175529381_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4323	175529377	175529383	7mer-m8	175529367	175529384	140.00	-18.97
CAediting_448933	chr5_175528317_+	ENSG00000164466.11	ENST00000321442	hsa-miR-323b-3p	175528311	175528317	7mer-m8	175528296	175528318	150.00	-15.95
CAediting_448960	chr5_175529272_+	ENSG00000164466.11	ENST00000321442	hsa-miR-361-3p	175529267	175529273	7mer-m8	175529250	175529274	152.00	-22.27

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_448935	chr5_175529082_+	ENSG00000164466.11	ENST00000321442	hsa-miR-10399-5p	175529076	175529082	7mer-m8	175529063	175529083	140	-9.6
CAediting_448965	chr5_175529303_+	ENSG00000164466.11	ENST00000321442	hsa-miR-106a-3p	175529296	175529302	7mer-m8	175529281	175529303	144	-11.01
CAediting_448965	chr5_175529303_+	ENSG00000164466.11	ENST00000321442	hsa-miR-122-5p	175529301	175529307	7mer-1a	175529289	175529307	143	-24.82
CAediting_448938	chr5_175529117_+	ENSG00000164466.11	ENST00000321442	hsa-miR-125a-3p	175529114	175529121	8mer-1a	175529100	175529121	144	-17.94
CAediting_448965	chr5_175529303_+	ENSG00000164466.11	ENST00000321442	hsa-miR-130a-3p	175529298	175529304	7mer-m8	175529284	175529305	152	-12.13
CAediting_448937	chr5_175529098_+	ENSG00000164466.11	ENST00000321442	hsa-miR-150-5p	175529092	175529098	7mer-m8	175529078	175529099	140	-15.8
CAediting_448940	chr5_175529160_+	ENSG00000164466.11	ENST00000321442	hsa-miR-193b-5p	175529158	175529164	7mer-m8	175529144	175529165	141	-20.42
CAediting_448941	chr5_175529161_+	ENSG00000164466.11	ENST00000321442	hsa-miR-193b-5p	175529158	175529164	7mer-m8	175529144	175529165	141	-20.42
CAediting_448925	chr5_175528060_+	ENSG00000164466.11	ENST00000321442	hsa-miR-20b-3p	175528056	175528062	7mer-m8	175528042	175528063	151	-18.98
CAediting_448926	chr5_175528062_+	ENSG00000164466.11	ENST00000321442	hsa-miR-20b-3p	175528056	175528062	7mer-m8	175528042	175528063	151	-18.98
CAediting_448931	chr5_175528170_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3189-3p	175528165	175528171	7mer-m8	175528150	175528172	145	-20.15
CAediting_448965	chr5_175529303_+	ENSG00000164466.11	ENST00000321442	hsa-miR-3666	175529298	175529304	7mer-m8	175529284	175529305	149	-13.57
CAediting_448933	chr5_175528317_+	ENSG00000164466.11	ENST00000321442	hsa-miR-374c-5p	175528310	175528316	7mer-m8	175528299	175528317	155	-11.6
CAediting_448959	chr5_175529266_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4267	175529264	175529271	8mer-1a	175529256	175529271	140	-18.69
CAediting_448932	chr5_175528192_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4284	175528188	175528195	8mer-1a	175528178	175528195	140	-12.92
CAediting_448962	chr5_175529283_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4284	175529279	175529286	8mer-1a	175529269	175529286	151	-18.62
CAediting_448965	chr5_175529303_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4295	175529298	175529304	7mer-m8	175529288	175529305	152	-12.01
CAediting_448920	chr5_175527999_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4327	175527995	175528001	7mer-m8	175527980	175528002	151	-22.19
CAediting_448922	chr5_175528037_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4478	175528034	175528040	7mer-m8	175528026	175528041	149	-25.05
CAediting_448920	chr5_175527999_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4538	175527997	175528002	6mer	175527980	175528003	142	-30.61
CAediting_448951	chr5_175529207_+	ENSG00000164466.11	ENST00000321442	hsa-miR-455-5p	175529203	175529209	7mer-m8	175529188	175529210	151	-18.36
CAediting_448922	chr5_175528037_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4649-3p	175528031	175528037	7mer-m8	175528018	175528038	140	-14.11
CAediting_448972	chr5_175529381_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4660	175529379	175529386	8mer-1a	175529363	175529386	146	-15.09
CAediting_448930	chr5_175528132_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4683	175528130	175528136	7mer-m8	175528115	175528137	149	-16.59
CAediting_448947	chr5_175529187_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4735-5p	175529185	175529191	7mer-m8	175529171	175529192	140	-4.28
CAediting_448948	chr5_175529188_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4735-5p	175529185	175529191	7mer-m8	175529171	175529192	140	-4.28
CAediting_448949	chr5_175529191_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4735-5p	175529185	175529191	7mer-m8	175529171	175529192	140	-4.28
CAediting_448961	chr5_175529279_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4772-3p	175529273	175529279	7mer-m8	175529261	175529280	152	-16.85
CAediting_448955	chr5_175529244_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4777-3p	175529237	175529243	7mer-m8	175529219	175529244	154	-19.06
CAediting_448949	chr5_175529191_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4794	175529189	175529195	7mer-m8	175529175	175529196	140	-12.3
CAediting_448950	chr5_175529195_+	ENSG00000164466.11	ENST00000321442	hsa-miR-4794	175529189	175529195	7mer-m8	175529175	175529196	140	-12.3
CAediting_448922	chr5_175528037_+	ENSG00000164466.11	ENST00000321442	hsa-miR-485-5p	175528035	175528041	7mer-m8	175528021	175528042	153	-20.53
CAediting_448965	chr5_175529303_+	ENSG00000164466.11	ENST00000321442	hsa-miR-504-3p	175529300	175529307	8mer-1a	175529287	175529307	151	-20.88
CAediting_448935	chr5_175529082_+	ENSG00000164466.11	ENST00000321442	hsa-miR-5089-5p	175529080	175529086	7mer-m8	175529065	175529087	148	-14.09
CAediting_448936	chr5_175529087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-5089-5p	175529080	175529086	7mer-m8	175529065	175529087	148	-14.09
CAediting_448952	chr5_175529223_+	ENSG00000164466.11	ENST00000321442	hsa-miR-5089-5p	175529216	175529222	7mer-m8	175529204	175529223	142	-12.75
CAediting_448951	chr5_175529207_+	ENSG00000164466.11	ENST00000321442	hsa-miR-550b-2-5p	175529202	175529208	7mer-m8	175529188	175529209	140	-14.61
CAediting_448951	chr5_175529207_+	ENSG00000164466.11	ENST00000321442	hsa-miR-550b-2-5p	175529202	175529208	7mer-m8	175529188	175529209	140	-14.61
CAediting_448938	chr5_175529117_+	ENSG00000164466.11	ENST00000321442	hsa-miR-640	175529110	175529116	7mer-m8	175529095	175529117	150	-23.95
CAediting_448935	chr5_175529082_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6504-3p	175529076	175529082	7mer-m8	175529062	175529083	145	-14.35
CAediting_448936	chr5_175529087_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6506-5p	175529081	175529087	7mer-m8	175529066	175529088	144	-13.6
CAediting_448952	chr5_175529223_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6506-5p	175529217	175529223	7mer-m8	175529203	175529224	143	-14.51
CAediting_448920	chr5_175527999_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6516-5p	175527993	175527999	7mer-m8	175527981	175528000	144	-15.29
CAediting_448933	chr5_175528317_+	ENSG00000164466.11	ENST00000321442	hsa-miR-655-3p	175528310	175528316	7mer-m8	175528297	175528317	154	-7.1
CAediting_448949	chr5_175529191_+	ENSG00000164466.11	ENST00000321442	hsa-miR-664a-5p	175529189	175529195	7mer-m8	175529173	175529196	141	-13.4
CAediting_448950	chr5_175529195_+	ENSG00000164466.11	ENST00000321442	hsa-miR-664a-5p	175529189	175529195	7mer-m8	175529173	175529196	141	-13.4
CAediting_448926	chr5_175528062_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6720-3p	175528060	175528066	7mer-m8	175528046	175528067	147	-20.67
CAediting_448959	chr5_175529266_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6736-3p	175529263	175529269	7mer-m8	175529250	175529270	141	-14.81
CAediting_448972	chr5_175529381_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6736-3p	175529378	175529384	7mer-m8	175529364	175529385	143	-17.24
CAediting_448922	chr5_175528037_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6765-5p	175528031	175528036	6mer	175528016	175528037	151	-32.61
CAediting_448937	chr5_175529098_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6778-3p	175529094	175529100	7mer-m8	175529081	175529101	143	-13.97
CAediting_448954	chr5_175529234_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6778-3p	175529230	175529236	7mer-m8	175529218	175529237	141	-15.45
CAediting_448934	chr5_175529073_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6782-5p	175529071	175529077	7mer-m8	175529054	175529078	150	-25.63
CAediting_448934	chr5_175529073_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6807-5p	175529066	175529072	7mer-m8	175529052	175529073	145	-24.67
CAediting_448968	chr5_175529321_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6812-3p	175529319	175529326	8mer-1a	175529306	175529326	140	-18.1
CAediting_448969	chr5_175529323_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6812-3p	175529319	175529326	8mer-1a	175529306	175529326	140	-18.1
CAediting_448931	chr5_175528170_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6813-3p	175528166	175528172	7mer-m8	175528153	175528173	140	-15.63
CAediting_448951	chr5_175529207_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6836-3p	175529200	175529206	7mer-m8	175529184	175529207	145	-19.7
CAediting_448922	chr5_175528037_+	ENSG00000164466.11	ENST00000321442	hsa-miR-7160-5p	175528032	175528038	7mer-m8	175528019	175528039	146	-18.19
CAediting_448922	chr5_175528037_+	ENSG00000164466.11	ENST00000321442	hsa-miR-7162-3p	175528032	175528037	6mer	175528020	175528038	140	-16.79
CAediting_448966	chr5_175529317_+	ENSG00000164466.11	ENST00000321442	hsa-miR-744-3p	175529313	175529320	8mer-1a	175529299	175529320	140	-10.2
CAediting_448967	chr5_175529320_+	ENSG00000164466.11	ENST00000321442	hsa-miR-744-3p	175529313	175529320	8mer-1a	175529299	175529320	140	-10.2
CAediting_448960	chr5_175529272_+	ENSG00000164466.11	ENST00000321442	hsa-miR-766-3p	175529266	175529272	7mer-m8	175529253	175529273	154	-20.77
CAediting_448931	chr5_175528170_+	ENSG00000164466.11	ENST00000321442	hsa-miR-887-5p	175528163	175528169	7mer-m8	175528150	175528170	147	-18.54

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000164466.11	ENST00000507823	hsa-miR-624-3p	175523933	175523939	7mer-m8	175523917	175523940	148	-16.84
CAediting_1229415	chr17_67471547_+	ENSG00000164466.11	ENST00000321442	hsa-miR-548aa	175527652	175527658	7mer-m8	175527635	175527659	144	-7.53
CAediting_580943	chr7_100356700_+	ENSG00000164466.11	ENST00000321442	hsa-miR-6840-3p	175528008	175528014	7mer-m8	175527994	175528015	144	-27.77
CAediting_1054808	chr15_66496985_-	ENSG00000164466.11	ENST00000507823	hsa-miR-4512	175523036	175523042	7mer-m8	175523025	175523043	143	-18.04
CAediting_1229414	chr17_67471546_+	ENSG00000164466.11	ENST00000507823	hsa-miR-548aa	175523092	175523098	7mer-m8	175523075	175523099	143	-12.92
CAediting_1368054	chr19_46709310_-	ENSG00000164466.11	ENST00000507823	hsa-miR-320e	175522609	175522615	7mer-m8	175522599	175522616	150	-19.8
CAediting_86358	chr1_109598906_+	ENSG00000164466.11	ENST00000507823	hsa-miR-197-5p	175522767	175522773	7mer-m8	175522752	175522774	147	-19.04
CAediting_77128	chr1_85133844_+	ENSG00000164466.11	ENST00000507823	hsa-miR-4423-3p	175523995	175524002	8mer-1a	175523982	175524002	144	-12.47
CAediting_228905	chr2_188297554_+	ENSG00000164466.11	ENST00000507823	hsa-miR-561-3p	175523696	175523703	8mer-1a	175523680	175523703	154	-8.78
CAediting_524911	chr7_5495852_-	ENSG00000164466.11	ENST00000507823	hsa-miR-589-3p	175523326	175523332	7mer-m8	175523308	175523333	155	-21.52

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1160181	chr17_7017644_-	ENSG00000164466.11	ENST00000321442	hsa-miR-195-3p	175528423	175528428	6mer	175528407	175528429	144	-18.7
CAediting_1160181	chr17_7017644_-	ENSG00000164466.11	ENST00000321442	hsa-miR-195-3p	175527713	175527719	7mer-m8	175527699	175527720	140	-5.33
CAediting_748296	chr10_51299626_+	ENSG00000164466.11	ENST00000321442	hsa-miR-605-3p	175527345	175527351	7mer-m8	175527330	175527352	142	-12.44
CAediting_1054808	chr15_66496985_-	ENSG00000164466.11	ENST00000507823	hsa-miR-4512	175523751	175523757	7mer-m8	175523737	175523758	141	-17.14
CAediting_1229414	chr17_67471546_+	ENSG00000164466.11	ENST00000507823	hsa-miR-548aa	175523121	175523127	7mer-m8	175523104	175523128	140	-10.77
CAediting_1229413	chr17_67471544_+	ENSG00000164466.11	ENST00000507823	hsa-miR-548aa	175523121	175523127	7mer-m8	175523104	175523128	140	-10.77
CAediting_1229415	chr17_67471547_+	ENSG00000164466.11	ENST00000507823	hsa-miR-548aa	175523121	175523127	7mer-m8	175523104	175523128	140	-10.77
CAediting_228905	chr2_188297554_+	ENSG00000164466.11	ENST00000507823	hsa-miR-561-3p	175523615	175523621	7mer-m8	175523601	175523622	140	-5.91
CAediting_524911	chr7_5495852_-	ENSG00000164466.11	ENST00000507823	hsa-miR-589-3p	175523136	175523142	7mer-m8	175523118	175523143	141	-20.34
CAediting_980496	chr14_31014685_-	ENSG00000164466.11	ENST00000507823	hsa-miR-624-3p	175523189	175523196	8mer-1a	175523176	175523196	141	-10.4

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SFXN1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000507017.4	protein_coding
ENST00000321442.8	protein_coding
ENST00000507823.4	nonsense_mediated_decay

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_448871	ENST00000507017.4	chr5_175477070_+	-158.50	-154.30	-160.50
CAediting_448872	ENST00000507017.4	chr5_175477103_+	-154.80	-154.30	-160.50
CAediting_448873	ENST00000507017.4	chr5_175477127_+	-157.70	-154.30	-160.50
CAediting_448874	ENST00000507017.4	chr5_175477146_+	-154.30	-154.30	-160.50
CAediting_448919	ENST00000321442.8	chr5_175527994_+	-1521.50	-1521.90	-1523.50
CAediting_448920	ENST00000321442.8	chr5_175527999_+	-1521.60	-1521.90	-1523.50
CAediting_448921	ENST00000321442.8	chr5_175528019_+	-1521.40	-1521.90	-1523.50
CAediting_448922	ENST00000321442.8	chr5_175528037_+	-1521.20	-1521.90	-1523.50
CAediting_448923	ENST00000321442.8	chr5_175528049_+	-1521.90	-1521.90	-1523.50
CAediting_448924	ENST00000321442.8	chr5_175528050_+	-1521.50	-1521.90	-1523.50
CAediting_448925	ENST00000321442.8	chr5_175528060_+	-1521.60	-1521.90	-1523.50
CAediting_448926	ENST00000321442.8	chr5_175528062_+	-1521.90	-1521.90	-1523.50
CAediting_448927	ENST00000321442.8	chr5_175528087_+	-1521.90	-1521.90	-1523.50
CAediting_448928	ENST00000321442.8	chr5_175528097_+	-1521.90	-1521.90	-1523.50
CAediting_448929	ENST00000321442.8	chr5_175528103_+	-1521.60	-1521.90	-1523.50
CAediting_448930	ENST00000321442.8	chr5_175528132_+	-1520.40	-1521.90	-1523.50
CAediting_448931	ENST00000321442.8	chr5_175528170_+	-1521.50	-1521.90	-1523.50
CAediting_448932	ENST00000321442.8	chr5_175528192_+	-1521.00	-1521.90	-1523.50
CAediting_448933	ENST00000321442.8	chr5_175528317_+	-1526.30	-1521.90	-1523.50
CAediting_448934	ENST00000321442.8	chr5_175529073_+	-1521.50	-1521.90	-1523.50
CAediting_448935	ENST00000321442.8	chr5_175529082_+	-1521.90	-1521.90	-1523.50
CAediting_448936	ENST00000321442.8	chr5_175529087_+	-1521.20	-1521.90	-1523.50
CAediting_448937	ENST00000321442.8	chr5_175529098_+	-1521.00	-1521.90	-1523.50
CAediting_448938	ENST00000321442.8	chr5_175529117_+	-1521.50	-1521.90	-1523.50
CAediting_448939	ENST00000321442.8	chr5_175529122_+	-1521.00	-1521.90	-1523.50
CAediting_448940	ENST00000321442.8	chr5_175529160_+	-1522.00	-1521.90	-1523.50
CAediting_448941	ENST00000321442.8	chr5_175529161_+	-1521.90	-1521.90	-1523.50
CAediting_448942	ENST00000321442.8	chr5_175529176_+	-1522.00	-1521.90	-1523.50
CAediting_448943	ENST00000321442.8	chr5_175529177_+	-1522.00	-1521.90	-1523.50
CAediting_448944	ENST00000321442.8	chr5_175529178_+	-1522.00	-1521.90	-1523.50
CAediting_448945	ENST00000321442.8	chr5_175529183_+	-1521.60	-1521.90	-1523.50
CAediting_448946	ENST00000321442.8	chr5_175529185_+	-1522.00	-1521.90	-1523.50
CAediting_448947	ENST00000321442.8	chr5_175529187_+	-1522.00	-1521.90	-1523.50
CAediting_448948	ENST00000321442.8	chr5_175529188_+	-1521.90	-1521.90	-1523.50
CAediting_448949	ENST00000321442.8	chr5_175529191_+	-1521.60	-1521.90	-1523.50
CAediting_448950	ENST00000321442.8	chr5_175529195_+	-1528.10	-1521.90	-1523.50
CAediting_448951	ENST00000321442.8	chr5_175529207_+	-1524.80	-1521.90	-1523.50
CAediting_448952	ENST00000321442.8	chr5_175529223_+	-1521.20	-1521.90	-1523.50
CAediting_448953	ENST00000321442.8	chr5_175529227_+	-1521.90	-1521.90	-1523.50
CAediting_448954	ENST00000321442.8	chr5_175529234_+	-1521.00	-1521.90	-1523.50
CAediting_448955	ENST00000321442.8	chr5_175529244_+	-1520.60	-1521.90	-1523.50
CAediting_448956	ENST00000321442.8	chr5_175529247_+	-1521.00	-1521.90	-1523.50
CAediting_448957	ENST00000321442.8	chr5_175529249_+	-1521.40	-1521.90	-1523.50
CAediting_448958	ENST00000321442.8	chr5_175529250_+	-1519.40	-1521.90	-1523.50
CAediting_448959	ENST00000321442.8	chr5_175529266_+	-1522.00	-1521.90	-1523.50
CAediting_448960	ENST00000321442.8	chr5_175529272_+	-1521.00	-1521.90	-1523.50
CAediting_448961	ENST00000321442.8	chr5_175529279_+	-1521.20	-1521.90	-1523.50
CAediting_448962	ENST00000321442.8	chr5_175529283_+	-1521.00	-1521.90	-1523.50
CAediting_448963	ENST00000321442.8	chr5_175529287_+	-1527.90	-1521.90	-1523.50
CAediting_448964	ENST00000321442.8	chr5_175529288_+	-1521.80	-1521.90	-1523.50
CAediting_448965	ENST00000321442.8	chr5_175529303_+	-1521.50	-1521.90	-1523.50
CAediting_448966	ENST00000321442.8	chr5_175529317_+	-1526.10	-1521.90	-1523.50
CAediting_448967	ENST00000321442.8	chr5_175529320_+	-1521.90	-1521.90	-1523.50
CAediting_448968	ENST00000321442.8	chr5_175529321_+	-1521.90	-1521.90	-1523.50
CAediting_448969	ENST00000321442.8	chr5_175529323_+	-1521.00	-1521.90	-1523.50
CAediting_448970	ENST00000321442.8	chr5_175529327_+	-1521.00	-1521.90	-1523.50
CAediting_448971	ENST00000321442.8	chr5_175529348_+	-1522.00	-1521.90	-1523.50
CAediting_448972	ENST00000321442.8	chr5_175529381_+	-1522.70	-1521.90	-1523.50
CAediting_448917	ENST00000507823.4	chr5_175524025_+	-765.90	-761.20	-765.90

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Relation with ADAR for SFXN1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
GBM	CAediting_448935	chr5_175529082_+	.	.	0.027707533926213	0.250948503526352	.	.

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Relation with cancer stages for SFXN1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_448935	chr5_175529082_+	0.0310347359842119	-0.30849552200475
HNSC	clinical_stage	CAediting_448944	chr5_175529178_+	0.00391040855552909	-0.382902243271513
LUSC	pathologic_stage	CAediting_448935	chr5_175529082_+	0.0447567215572309	0.235641934842899

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Relation with survival for SFXN1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SFXN1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SFXN1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
SFXN1	C0009402	Colorectal Carcinoma	1	CTD_human
SFXN1	C0009404	Colorectal Neoplasms	1	CTD_human
SFXN1	C0152013	Adenocarcinoma of lung (disorder)	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene