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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: RPL23 (CAeditome ID:9349)

Gene summary for RPL23

check button Gene summary
Gene informationGene symbol

RPL23

Gene ID

9349

Gene nameribosomal protein L23
SynonymsL23|rpL17
Cytomap

17q12

Type of geneprotein-coding
Description60S ribosomal protein L2360S ribosomal protein L17large ribosomal subunit protein uL14ribosomal protein L17
Modification date20210518
UniProtAcc

P62829

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
RPL23

GO:0003735

60S ribosomal protein L23

23636399

RPL23

GO:1990948

60S ribosomal protein L23

15314173

RPL23

GO:0032986

60S ribosomal protein L23

19160485

RPL23

GO:1904667

60S ribosomal protein L23

15314173

RPL23

GO:2000059

60S ribosomal protein L23

15314173

RPL23

GO:0005654

60S ribosomal protein L23

15314173

RPL23

GO:0005730

60S ribosomal protein L23

15314173

RPL23

GO:0005730

60S ribosomal protein L23

19160485

RPL23

GO:0005737

60S ribosomal protein L23

15314173

RPL23

GO:0022626

60S ribosomal protein L23

23636399

RPL23

GO:0032991

60S ribosomal protein L23

19160485


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RNA A-to-I events for RPL23

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000125691.11
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1188187(38847952, -), CAediting_1188188(38847960, -), CAediting_1188189(38847961, -), CAediting_1188190(38847983, -), CAediting_1188191(38847998, -), CAediting_1188192(38848005, -), CAediting_1188193(38848026, -), CAediting_1188194(38848029, -), CAediting_1188195(38848034, -), CAediting_1188196(38848063, -), CAediting_1188197(38848079, -), CAediting_1188198(38848256, -), CAediting_1188199(38848286, -), CAediting_1188200(38848296, -), CAediting_1188201(38848306, -), CAediting_1188202(38848335, -), CAediting_1188203(38848336, -), CAediting_1188204(38848344, -), CAediting_1188205(38848350, -), CAediting_1188206(38848354, -), CAediting_1188207(38848360, -), CAediting_1188208(38848367, -), CAediting_1188209(38848371, -), CAediting_1188210(38848376, -), CAediting_1188211(38848377, -), CAediting_1188212(38848384, -), CAediting_1188213(38848394, -), CAediting_1188214(38848398, -), CAediting_1188215(38848402, -), CAediting_1188216(38848406, -), CAediting_1188217(38848407, -), CAediting_1188218(38848410, -), CAediting_1188219(38848421, -), CAediting_1188220(38848426, -), CAediting_1188221(38848427, -), CAediting_1188222(38848436, -), CAediting_1188223(38848446, -), CAediting_1188224(38848449, -), CAediting_1188225(38848451, -), CAediting_1188226(38848460, -), CAediting_1188227(38848465, -), CAediting_1188228(38848483, -), CAediting_1188229(38848489, -), CAediting_1188230(38848505, -), CAediting_1188231(38848506, -), CAediting_1188232(38848512, -), CAediting_1188233(38848514, -), CAediting_1188234(38848524, -), CAediting_1188235(38849384, -), CAediting_1188236(38849408, -), CAediting_1188237(38849411, -), CAediting_1188238(38849416, -), CAediting_1188239(38849423, -), CAediting_1188240(38849427, -), CAediting_1188241(38849434, -), CAediting_1188242(38849447, -), CAediting_1188243(38849456, -), CAediting_1188244(38849457, -), CAediting_1188245(38849459, -), CAediting_1188246(38849465, -), CAediting_1188247(38849474, -), CAediting_1188248(38849475, -), CAediting_1188249(38849502, -), CAediting_1188250(38849505, -), CAediting_1188251(38849506, -), CAediting_1188252(38849507, -), CAediting_1188253(38849508, -), CAediting_1188254(38849509, -), CAediting_1188255(38849511, -), CAediting_1188256(38849513, -), CAediting_1188257(38849514, -), CAediting_1188258(38849515, -), CAediting_1188259(38849516, -), CAediting_1188260(38849531, -), CAediting_1188261(38849533, -), CAediting_1188262(38849542, -), CAediting_1188263(38849545, -), CAediting_1188264(38849554, -), CAediting_1188265(38849556, -), CAediting_1188266(38849557, -), CAediting_1188267(38849562, -), CAediting_1188268(38849565, -), CAediting_1188269(38849578, -), CAediting_1188270(38849582, -), CAediting_1188271(38849587, -), CAediting_1188272(38849600, -), CAediting_1188273(38849602, -), CAediting_1188274(38849603, -), CAediting_1188275(38849608, -), CAediting_1188276(38849609, -), CAediting_1188277(38849615, -), CAediting_1188278(38849622, -), CAediting_1188279(38849886, -), CAediting_1188280(38849890, -), CAediting_1188281(38849902, -), CAediting_1188282(38849903, -), CAediting_1188283(38849908, -), CAediting_1188284(38849915, -), CAediting_1188285(38849916, -), CAediting_1188286(38849917, -), CAediting_1188287(38849924, -), CAediting_1188288(38849925, -), CAediting_1188289(38849935, -), CAediting_1188290(38849938, -), CAediting_1188291(38849948, -), CAediting_1188292(38849961, -), CAediting_1188293(38849970, -), CAediting_1188294(38849990, -), CAediting_1188295(38849994, -), CAediting_1188296(38849996, -), CAediting_1188297(38849999, -), CAediting_1188298(38850006, -), CAediting_1188299(38850009, -), CAediting_1188300(38850035, -), CAediting_1188301(38850036, -), CAediting_1188302(38850043, -), CAediting_1188303(38850412, -), CAediting_1188304(38850620, -), CAediting_1188305(38850630, -), CAediting_1188306(38852082, -), CAediting_1188307(38852159, -),

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RNA editing positional annotations for RPL23 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_1188187chr17_38847952_-nonsynonymous SNVENST00000394333.4c.A332Gp.Q111RD.N
CAediting_1188189chr17_38847961_-nonsynonymous SNVENST00000394333.4c.A323Gp.K108RD.N
CAediting_1188190chr17_38847983_-nonsynonymous SNVENST00000394333.4c.A301Gp.N101DD.N
CAediting_1188191chr17_38847998_-nonsynonymous SNVENST00000394333.4c.A286Gp.N96DD.N
CAediting_1188303chr17_38850412_-nonsynonymous SNVENST00000245857.8c.A113Gp.Y38CTDD
CAediting_1188303chr17_38850412_-nonsynonymous SNVENST00000394332.4c.A290Gp.Y97CTDD
CAediting_1188303chr17_38850412_-nonsynonymous SNVENST00000479035.5c.A290Gp.Y97CTDD
CAediting_1188303chr17_38850412_-nonsynonymous SNVENST00000577407.4c.A290Gp.Y97CTDD

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1188187chr17_38847952_-exonic
CAediting_1188188chr17_38847960_-exonic
CAediting_1188189chr17_38847961_-exonic
CAediting_1188190chr17_38847983_-exonic
CAediting_1188191chr17_38847998_-exonic
CAediting_1188192chr17_38848005_-exonic
CAediting_1188193chr17_38848026_-exonic
CAediting_1188194chr17_38848029_-exonic
CAediting_1188195chr17_38848034_-exonic
CAediting_1188196chr17_38848063_-UTR3
CAediting_1188197chr17_38848079_-UTR3
CAediting_1188198chr17_38848256_-UTR3
CAediting_1188199chr17_38848286_-UTR3
CAediting_1188200chr17_38848296_-UTR3
CAediting_1188201chr17_38848306_-UTR3
CAediting_1188202chr17_38848335_-UTR3
CAediting_1188203chr17_38848336_-UTR3
CAediting_1188204chr17_38848344_-UTR3
CAediting_1188205chr17_38848350_-UTR3
CAediting_1188206chr17_38848354_-UTR3
CAediting_1188207chr17_38848360_-UTR3
CAediting_1188208chr17_38848367_-UTR3
CAediting_1188209chr17_38848371_-UTR3
CAediting_1188210chr17_38848376_-UTR3
CAediting_1188211chr17_38848377_-UTR3
CAediting_1188212chr17_38848384_-UTR3
CAediting_1188213chr17_38848394_-UTR3
CAediting_1188214chr17_38848398_-UTR3
CAediting_1188215chr17_38848402_-UTR3
CAediting_1188216chr17_38848406_-UTR3
CAediting_1188217chr17_38848407_-UTR3
CAediting_1188218chr17_38848410_-UTR3
CAediting_1188219chr17_38848421_-UTR3
CAediting_1188220chr17_38848426_-UTR3
CAediting_1188221chr17_38848427_-UTR3
CAediting_1188222chr17_38848436_-UTR3
CAediting_1188223chr17_38848446_-UTR3
CAediting_1188224chr17_38848449_-UTR3
CAediting_1188225chr17_38848451_-UTR3
CAediting_1188226chr17_38848460_-UTR3
CAediting_1188227chr17_38848465_-UTR3
CAediting_1188228chr17_38848483_-UTR3
CAediting_1188229chr17_38848489_-UTR3
CAediting_1188230chr17_38848505_-UTR3
CAediting_1188231chr17_38848506_-UTR3
CAediting_1188232chr17_38848512_-UTR3
CAediting_1188233chr17_38848514_-UTR3
CAediting_1188234chr17_38848524_-UTR3
CAediting_1188235chr17_38849384_-UTR3
CAediting_1188236chr17_38849408_-UTR3
CAediting_1188237chr17_38849411_-UTR3
CAediting_1188238chr17_38849416_-UTR3
CAediting_1188239chr17_38849423_-UTR3
CAediting_1188240chr17_38849427_-UTR3
CAediting_1188241chr17_38849434_-UTR3
CAediting_1188242chr17_38849447_-UTR3
CAediting_1188243chr17_38849456_-UTR3
CAediting_1188244chr17_38849457_-UTR3
CAediting_1188245chr17_38849459_-UTR3
CAediting_1188246chr17_38849465_-UTR3
CAediting_1188247chr17_38849474_-UTR3
CAediting_1188248chr17_38849475_-UTR3
CAediting_1188249chr17_38849502_-UTR3
CAediting_1188250chr17_38849505_-UTR3
CAediting_1188251chr17_38849506_-UTR3
CAediting_1188252chr17_38849507_-UTR3
CAediting_1188253chr17_38849508_-UTR3
CAediting_1188254chr17_38849509_-UTR3
CAediting_1188255chr17_38849511_-UTR3
CAediting_1188256chr17_38849513_-UTR3
CAediting_1188257chr17_38849514_-UTR3
CAediting_1188258chr17_38849515_-UTR3
CAediting_1188259chr17_38849516_-UTR3
CAediting_1188260chr17_38849531_-UTR3
CAediting_1188261chr17_38849533_-UTR3
CAediting_1188262chr17_38849542_-UTR3
CAediting_1188263chr17_38849545_-UTR3
CAediting_1188264chr17_38849554_-UTR3
CAediting_1188265chr17_38849556_-UTR3
CAediting_1188266chr17_38849557_-UTR3
CAediting_1188267chr17_38849562_-UTR3
CAediting_1188268chr17_38849565_-UTR3
CAediting_1188269chr17_38849578_-UTR3
CAediting_1188270chr17_38849582_-UTR3
CAediting_1188271chr17_38849587_-UTR3
CAediting_1188272chr17_38849600_-UTR3
CAediting_1188273chr17_38849602_-UTR3
CAediting_1188274chr17_38849603_-UTR3
CAediting_1188275chr17_38849608_-UTR3
CAediting_1188276chr17_38849609_-UTR3
CAediting_1188277chr17_38849615_-UTR3
CAediting_1188278chr17_38849622_-UTR3
CAediting_1188279chr17_38849886_-UTR3
CAediting_1188280chr17_38849890_-UTR3
CAediting_1188281chr17_38849902_-UTR3
CAediting_1188282chr17_38849903_-UTR3
CAediting_1188283chr17_38849908_-UTR3
CAediting_1188284chr17_38849915_-UTR3
CAediting_1188285chr17_38849916_-UTR3
CAediting_1188286chr17_38849917_-UTR3
CAediting_1188287chr17_38849924_-UTR3
CAediting_1188288chr17_38849925_-UTR3
CAediting_1188289chr17_38849935_-UTR3
CAediting_1188290chr17_38849938_-UTR3
CAediting_1188291chr17_38849948_-UTR3
CAediting_1188292chr17_38849961_-UTR3
CAediting_1188293chr17_38849970_-UTR3
CAediting_1188294chr17_38849990_-UTR3
CAediting_1188295chr17_38849994_-UTR3
CAediting_1188296chr17_38849996_-UTR3
CAediting_1188297chr17_38849999_-UTR3
CAediting_1188298chr17_38850006_-UTR3
CAediting_1188299chr17_38850009_-UTR3
CAediting_1188300chr17_38850035_-UTR3
CAediting_1188301chr17_38850036_-UTR3
CAediting_1188302chr17_38850043_-UTR3
CAediting_1188303chr17_38850412_-exonic
CAediting_1188304chr17_38850620_-ncRNA_exonic
CAediting_1188305chr17_38850630_-ncRNA_exonic
CAediting_1188306chr17_38852082_-ncRNA_exonic
CAediting_1188307chr17_38852159_-ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1188187chr17_38847952_-SINEAluAluJr4
CAediting_1188188chr17_38847960_-SINEAluAluJr4
CAediting_1188189chr17_38847961_-SINEAluAluJr4
CAediting_1188190chr17_38847983_-SINEAluAluJr4
CAediting_1188191chr17_38847998_-SINEAluAluJr4
CAediting_1188192chr17_38848005_-SINEAluAluJr4
CAediting_1188193chr17_38848026_-SINEAluAluJr4
CAediting_1188194chr17_38848029_-SINEAluAluJr4
CAediting_1188195chr17_38848034_-SINEAluAluJr4
CAediting_1188196chr17_38848063_-SINEAluAluJr4
CAediting_1188197chr17_38848079_-SINEAluAluJr4
CAediting_1188198chr17_38848256_-SINEAluAluSx
CAediting_1188199chr17_38848286_-SINEAluAluSx
CAediting_1188200chr17_38848296_-SINEAluAluSx
CAediting_1188201chr17_38848306_-SINEAluAluSx
CAediting_1188202chr17_38848335_-SINEAluAluSx
CAediting_1188203chr17_38848336_-SINEAluAluSx
CAediting_1188204chr17_38848344_-SINEAluAluSx
CAediting_1188205chr17_38848350_-SINEAluAluSx
CAediting_1188206chr17_38848354_-SINEAluAluSx
CAediting_1188207chr17_38848360_-SINEAluAluSx
CAediting_1188208chr17_38848367_-SINEAluAluSx
CAediting_1188209chr17_38848371_-SINEAluAluSx
CAediting_1188210chr17_38848376_-SINEAluAluSx
CAediting_1188211chr17_38848377_-SINEAluAluSx
CAediting_1188212chr17_38848384_-SINEAluAluSx
CAediting_1188213chr17_38848394_-SINEAluAluSx
CAediting_1188214chr17_38848398_-SINEAluAluSx
CAediting_1188215chr17_38848402_-SINEAluAluSx
CAediting_1188216chr17_38848406_-SINEAluAluSx
CAediting_1188217chr17_38848407_-SINEAluAluSx
CAediting_1188218chr17_38848410_-SINEAluAluSx
CAediting_1188219chr17_38848421_-SINEAluAluSx
CAediting_1188220chr17_38848426_-SINEAluAluSx
CAediting_1188221chr17_38848427_-SINEAluAluSx
CAediting_1188222chr17_38848436_-SINEAluAluSx
CAediting_1188223chr17_38848446_-SINEAluAluSx
CAediting_1188224chr17_38848449_-SINEAluAluSx
CAediting_1188225chr17_38848451_-SINEAluAluSx
CAediting_1188226chr17_38848460_-SINEAluAluSx
CAediting_1188227chr17_38848465_-SINEAluAluSx
CAediting_1188228chr17_38848483_-SINEAluAluSx
CAediting_1188229chr17_38848489_-SINEAluAluSx
CAediting_1188230chr17_38848505_-SINEAluAluSx
CAediting_1188231chr17_38848506_-SINEAluAluSx
CAediting_1188232chr17_38848512_-SINEAluAluSx
CAediting_1188233chr17_38848514_-SINEAluAluSx
CAediting_1188234chr17_38848524_-SINEAluAluSx
CAediting_1188235chr17_38849384_-SINEAluAluSg
CAediting_1188236chr17_38849408_-SINEAluAluSg
CAediting_1188237chr17_38849411_-SINEAluAluSg
CAediting_1188238chr17_38849416_-SINEAluAluSg
CAediting_1188239chr17_38849423_-SINEAluAluSg
CAediting_1188240chr17_38849427_-SINEAluAluSg
CAediting_1188241chr17_38849434_-SINEAluAluSg
CAediting_1188242chr17_38849447_-SINEAluAluSg
CAediting_1188243chr17_38849456_-SINEAluAluSg
CAediting_1188244chr17_38849457_-SINEAluAluSg
CAediting_1188245chr17_38849459_-SINEAluAluSg
CAediting_1188246chr17_38849465_-SINEAluAluSg
CAediting_1188247chr17_38849474_-SINEAluAluSg
CAediting_1188248chr17_38849475_-SINEAluAluSg
CAediting_1188249chr17_38849502_-SINEAluAluSg
CAediting_1188250chr17_38849505_-SINEAluAluSg
CAediting_1188251chr17_38849506_-SINEAluAluSg
CAediting_1188252chr17_38849507_-SINEAluAluSg
CAediting_1188253chr17_38849508_-SINEAluAluSg
CAediting_1188254chr17_38849509_-SINEAluAluSg
CAediting_1188255chr17_38849511_-SINEAluAluSg
CAediting_1188256chr17_38849513_-SINEAluAluSg
CAediting_1188257chr17_38849514_-SINEAluAluSg
CAediting_1188258chr17_38849515_-SINEAluAluSg
CAediting_1188259chr17_38849516_-SINEAluAluSg
CAediting_1188260chr17_38849531_-SINEAluAluSg
CAediting_1188261chr17_38849533_-SINEAluAluSg
CAediting_1188262chr17_38849542_-SINEAluAluSg
CAediting_1188263chr17_38849545_-SINEAluAluSg
CAediting_1188264chr17_38849554_-SINEAluAluSg
CAediting_1188265chr17_38849556_-SINEAluAluSg
CAediting_1188266chr17_38849557_-SINEAluAluSg
CAediting_1188267chr17_38849562_-SINEAluAluSg
CAediting_1188268chr17_38849565_-SINEAluAluSg
CAediting_1188269chr17_38849578_-SINEAluAluSg
CAediting_1188270chr17_38849582_-SINEAluAluSg
CAediting_1188271chr17_38849587_-SINEAluAluSg
CAediting_1188272chr17_38849600_-SINEAluAluSg
CAediting_1188273chr17_38849602_-SINEAluAluSg
CAediting_1188274chr17_38849603_-SINEAluAluSg
CAediting_1188275chr17_38849608_-SINEAluAluSg
CAediting_1188276chr17_38849609_-SINEAluAluSg
CAediting_1188277chr17_38849615_-SINEAluAluSg
CAediting_1188278chr17_38849622_-SINEAluAluSg
CAediting_1188279chr17_38849886_-SINEAluAluSx
CAediting_1188280chr17_38849890_-SINEAluAluSx
CAediting_1188281chr17_38849902_-SINEAluAluSx
CAediting_1188282chr17_38849903_-SINEAluAluSx
CAediting_1188283chr17_38849908_-SINEAluAluSx
CAediting_1188284chr17_38849915_-SINEAluAluSx
CAediting_1188285chr17_38849916_-SINEAluAluSx
CAediting_1188286chr17_38849917_-SINEAluAluSx
CAediting_1188287chr17_38849924_-SINEAluAluSx
CAediting_1188288chr17_38849925_-SINEAluAluSx
CAediting_1188289chr17_38849935_-SINEAluAluSx
CAediting_1188290chr17_38849938_-SINEAluAluSx
CAediting_1188291chr17_38849948_-SINEAluAluSx
CAediting_1188292chr17_38849961_-SINEAluAluSx
CAediting_1188293chr17_38849970_-SINEAluAluSx
CAediting_1188294chr17_38849990_-SINEAluAluSx
CAediting_1188295chr17_38849994_-SINEAluAluSx
CAediting_1188296chr17_38849996_-SINEAluAluSx
CAediting_1188297chr17_38849999_-SINEAluAluSx
CAediting_1188298chr17_38850006_-SINEAluAluSx
CAediting_1188299chr17_38850009_-SINEAluAluSx
CAediting_1188300chr17_38850035_-SINEAluAluSx
CAediting_1188301chr17_38850036_-SINEAluAluSx
CAediting_1188302chr17_38850043_-SINEAluAluSx
CAediting_1188304chr17_38850620_-SINEAluAluJb
CAediting_1188305chr17_38850630_-SINEAluAluJb
CAediting_1188306chr17_38852082_-SINEAluAluSx
CAediting_1188307chr17_38852159_-SINEAluAluSx

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RNA A-to-I editing events in the alternative splicing sites for RPL23

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
IRCAediting_1188303chr17_38850412_-38850409:388504175SS0+3iTCTTTATTT-14.3TCTTTGTTT-20.31
IRCAediting_1188303chr17_38850412_-38850410:388504185SS0+4iTTCTTTATT-21.75TTCTTTGTT-28.96
IRCAediting_1188303chr17_38850412_-38850391:388504133SS0+19iTATTTTGAAGATAATGCAGGAGT-18.01TGTTTTGAAGATAATGCAGGAGT-17.24
IRCAediting_1188303chr17_38850412_-38850401:388504233SS0+9iCGTGTTTCTTTATTTTGAAGATA8.6CGTGTTTCTTTGTTTTGAAGATA8.39

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000125691.11.RPL23.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000125691.11.RPL23.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPL23

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
LUAD.CAediting_1188270.ENSG00000125691.RPL23.png
Soverview
MESO.CAediting_1188271.ENSG00000125691.RPL23.png
Soverview
MESO.CAediting_1188292.ENSG00000125691.RPL23.png
Soverview
MESO.CAediting_1188293.ENSG00000125691.RPL23.png
Soverview

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Protein coding region RNA A-to-I editings for RPL23

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for RPL23

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1188188chr17_38847960_-ENSG00000125691.11ENST00000394332hsa-miR-463538847960388479667mer-m83884795938847979146.00-14.16
CAediting_1188188chr17_38847960_-ENSG00000125691.11ENST00000394332hsa-miR-478038847958388479647mer-m83884795738847980143.00-17.75
CAediting_1188188chr17_38847960_-ENSG00000125691.11ENST00000394332hsa-miR-6769a-3p38847955388479617mer-m83884795438847974140.00-17.74
CAediting_1188189chr17_38847961_-ENSG00000125691.11ENST00000394332hsa-miR-146a-3p38847959388479657mer-m83884795838847979145.00-17.61
CAediting_1188189chr17_38847961_-ENSG00000125691.11ENST00000394332hsa-miR-2276-5p38847957388479637mer-m83884795638847976145.00-24.47
CAediting_1188189chr17_38847961_-ENSG00000125691.11ENST00000394332hsa-miR-392138847959388479646mer3884795838847979140.00-20.05
CAediting_1188190chr17_38847983_-ENSG00000125691.11ENST00000394332hsa-miR-4661-3p38847978388479847mer-m83884797738847997153.00-20.83
CAediting_1188190chr17_38847983_-ENSG00000125691.11ENST00000394332hsa-miR-4733-5p38847981388479877mer-m83884798038848001150.00-17.11
CAediting_1188192chr17_38848005_-ENSG00000125691.11ENST00000394332hsa-miR-1212238848003388480097mer-m83884800238848025147.00-16.69
CAediting_1188192chr17_38848005_-ENSG00000125691.11ENST00000394332hsa-miR-128-3p38848004388480118mer-1a3884800438848026150.00-17.33
CAediting_1188192chr17_38848005_-ENSG00000125691.11ENST00000394332hsa-miR-128-3p38848004388480118mer-1a3884800438848026150.00-17.33
CAediting_1188192chr17_38848005_-ENSG00000125691.11ENST00000394332hsa-miR-216a-3p38848004388480118mer-1a3884800438848025152.00-20.32
CAediting_1188192chr17_38848005_-ENSG00000125691.11ENST00000394332hsa-miR-27a-3p38848004388480107mer-m83884800338848025154.00-17.85
CAediting_1188192chr17_38848005_-ENSG00000125691.11ENST00000394332hsa-miR-27b-3p38848004388480107mer-m83884800338848025154.00-19.91
CAediting_1188192chr17_38848005_-ENSG00000125691.11ENST00000394332hsa-miR-3681-3p38848004388480118mer-1a3884800438848027152.00-15.15
CAediting_1188191chr17_38847998_-ENSG00000125691.11ENST00000394332hsa-miR-455-3p38847994388480007mer-m83884799338848013148.00-16.46

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1188188chr17_38847960_-ENSG00000125691.11ENST00000394332hsa-miR-129-1-3p38847955388479617mer-m83884795438847975140-15.38
CAediting_1188188chr17_38847960_-ENSG00000125691.11ENST00000394332hsa-miR-129-2-3p38847955388479617mer-m83884795438847975140-17.31
CAediting_1188190chr17_38847983_-ENSG00000125691.11ENST00000394332hsa-miR-315938847978388479836mer3884797738847997141-19.34

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000125691.11ENST00000577407hsa-miR-200b-3p38850138388501447mer-m83885013738850158161-24.07

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RPL23

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for RPL23

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
GBMCAediting_1188210chr17_38848376_-0.04112906167831980.260172669084377....
LGGCAediting_1188219chr17_38848421_-0.01429474863415890.240759388527683....
LGGCAediting_1188226chr17_38848460_-..0.000194894238697940.33512686445718..
THCACAediting_1188226chr17_38848460_-0.04660791956626270.216467853419854....
BRCACAediting_1188249chr17_38849502_-0.04744917351349250.26852542403144....
BRCACAediting_1188253chr17_38849508_-0.01424883889746930.298193913217661....
BRCACAediting_1188255chr17_38849511_-0.0007028528421243460.308883123670654....
BRCACAediting_1188258chr17_38849515_-1.6981032509996e-080.347954999257633....
THCACAediting_1188258chr17_38849515_-0.0002235091205211170.265399565595122....
KIRCCAediting_1188258chr17_38849515_-0.004067136713623680.235619320978062....
UCECCAediting_1188258chr17_38849515_-0.0328111169979850.2936845237322..0.02305378928284710.311766856444806
OVCAediting_1188258chr17_38849515_-0.02547792816997790.224510048770241....
SKCMCAediting_1188258chr17_38849515_-0.001120050043850330.398175321573972....
THCACAediting_1188260chr17_38849531_-0.01423893796972620.260493003588186....
BLCACAediting_1188270chr17_38849582_-7.6780960686387e-070.317811514688825..0.03733163270285120.136793409124298
LGGCAediting_1188270chr17_38849582_-8.12603868971601e-170.511713582974006....
BRCACAediting_1188270chr17_38849582_-8.11635562473438e-260.357427711869765....
LIHCCAediting_1188270chr17_38849582_-5.05801254792856e-050.346398783276704....
CESCCAediting_1188270chr17_38849582_-0.003844880059755950.229443898886817....
LUADCAediting_1188270chr17_38849582_-2.10775877611392e-050.245703069174178....
COADCAediting_1188270chr17_38849582_-0.0002783710607484170.284510134221011....
LUSCCAediting_1188270chr17_38849582_-4.74909002822869e-070.290583945447503....
GBMCAediting_1188270chr17_38849582_-0.000231535054439280.444735618671526....
PRADCAediting_1188270chr17_38849582_-1.67601223209406e-060.241855495042759....
HNSCCAediting_1188270chr17_38849582_-0.0003764387963974480.192047895710695....
STADCAediting_1188270chr17_38849582_-0.03802091024026190.138722197003789..0.04662728402618030.13309303830316
THCACAediting_1188270chr17_38849582_-3.83725811893285e-060.208232460258827....
UCECCAediting_1188270chr17_38849582_-9.19074977570983e-080.313145668079135....
ESCACAediting_1188270chr17_38849582_-0.00134145945046490.280496560294706....
OVCAediting_1188270chr17_38849582_-0.001555583625414530.191662484324736....
PCPGCAediting_1188270chr17_38849582_-0.01077416940120460.229191363875709....
SKCMCAediting_1188270chr17_38849582_-1.98829457920768e-070.292441565145354....
MESOCAediting_1188270chr17_38849582_-0.002912431686162020.366297463984341..0.01887136815199230.292813981630071
SARCCAediting_1188270chr17_38849582_-3.69857846400492e-060.352393106251499....
TGCTCAediting_1188270chr17_38849582_-2.84005868404527e-080.469888778495269....
THYMCAediting_1188270chr17_38849582_-6.58063854048822e-060.425847369287527..0.00222051046497240.296761907219119
LGGCAediting_1188271chr17_38849587_-1.42872906232497e-050.41712613270291....
BRCACAediting_1188271chr17_38849587_-3.2860505588446e-180.352530270527992....
LIHCCAediting_1188271chr17_38849587_-0.0006941213110282780.413026792540949....
CESCCAediting_1188271chr17_38849587_-0.004240677217309420.285041123156121....
LUADCAediting_1188271chr17_38849587_-0.01418674633984080.188917905496742....
LUSCCAediting_1188271chr17_38849587_-0.000388996986935160.272174702823348..0.01456181787085130.189333449517633
PRADCAediting_1188271chr17_38849587_-0.0002308610161800860.274201279976561....
HNSCCAediting_1188271chr17_38849587_-0.005399850586649910.211889895021589....
STADCAediting_1188271chr17_38849587_-0.03838044229932360.174602477255168..0.003650579634938290.243279737505262
THCACAediting_1188271chr17_38849587_-2.37863235135213e-080.261035908876874....
UCECCAediting_1188271chr17_38849587_-4.50041148693153e-060.369277136934745....
ESCACAediting_1188271chr17_38849587_-0.0005815586346175680.359511665225095....
OVCAediting_1188271chr17_38849587_-0.0301352959932040.14792518621943....
SKCMCAediting_1188271chr17_38849587_-0.0005364764015980510.237451227896633....
SARCCAediting_1188271chr17_38849587_-0.006810182270865650.270312357731645....
TGCTCAediting_1188271chr17_38849587_-8.9165309815517e-110.59181117054454....
THYMCAediting_1188271chr17_38849587_-0.003151582173100420.324190920834517..0.03655640101462220.232715657748906
BRCACAediting_1188277chr17_38849615_-0.03051859446871460.153025063483907....
LUADCAediting_1188277chr17_38849615_-0.002262112596398980.3838054293312..0.04130773653287240.262086018832571
THCACAediting_1188277chr17_38849615_-0.0003349544556598890.282645129837099....
KIRCCAediting_1188277chr17_38849615_-0.006300683854977330.201242514778252....
BRCACAediting_1188280chr17_38849890_-0.0003697224941229830.275603290872497....
THCACAediting_1188280chr17_38849890_-0.005598592149574420.202394001430347....
THCACAediting_1188286chr17_38849917_-0.03347031465737040.292633623589041....
BLCACAediting_1188292chr17_38849961_-..0.03444572760983470.212808529776152..
LGGCAediting_1188292chr17_38849961_-0.01689274020962390.284733182032149....
BRCACAediting_1188292chr17_38849961_-1.65462819213847e-060.211953094420799....
CESCCAediting_1188292chr17_38849961_-0.01374037454743650.324661059929925....
LUADCAediting_1188292chr17_38849961_-0.002648069627851820.23908619536101....
LUSCCAediting_1188292chr17_38849961_-1.14006222272917e-050.377186808818032....
HNSCCAediting_1188292chr17_38849961_-0.003419384485193570.252094380561417....
THCACAediting_1188292chr17_38849961_-2.24011714214994e-050.221734462612702....
SKCMCAediting_1188292chr17_38849961_-0.001562291945092680.245813389001055....
TGCTCAediting_1188292chr17_38849961_-1.16891383786379e-090.587300026853964....
THYMCAediting_1188292chr17_38849961_-0.001618510659421060.386265898774944....
LGGCAediting_1188293chr17_38849970_-0.0008242381808290.203490558709634....
BRCACAediting_1188293chr17_38849970_-3.59699577027399e-090.279094312127335....
LUADCAediting_1188293chr17_38849970_-0.009982782140815770.255278935694359....
GBMCAediting_1188293chr17_38849970_-0.001711692546125480.341118218289434....
STADCAediting_1188293chr17_38849970_-..0.005124143708912190.246009093844692..
THCACAediting_1188293chr17_38849970_-0.001029032611838490.190814441191158....
PCPGCAediting_1188293chr17_38849970_-0.0009089456753699750.4546937244905570.04824346730550340.28079202052735..
SKCMCAediting_1188293chr17_38849970_-7.39223041510425e-090.446281620165662....
TGCTCAediting_1188293chr17_38849970_-5.41041229904657e-110.752354283758811....
LUADCAediting_1188296chr17_38849996_-0.003849947185892550.394023919344488....
STADCAediting_1188296chr17_38849996_-..0.03576862696289610.177623123454121..
ESCACAediting_1188296chr17_38849996_-..0.01590295089313480.262381025925445..
OVCAediting_1188296chr17_38849996_-0.002810225281095150.222076726174612....

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Relation with cancer stages for RPL23

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BRCApathologic_stageCAediting_1188293chr17_38849970_-0.01176008699725650.121818399924558
HNSCclinical_stageCAediting_1188270chr17_38849582_-0.04478964702193820.110374411014888
HNSCpathologic_stageCAediting_1188270chr17_38849582_-0.02065665098917090.132906445004353
KIRCpathologic_stageCAediting_1188255chr17_38849511_-0.005303792193887630.358485312184023
KIRCpathologic_stageCAediting_1188270chr17_38849582_-0.003192299372603460.142051032986244
LUADpathologic_stageCAediting_1188258chr17_38849515_-0.04690375178362780.251357749602146
LUADpathologic_stageCAediting_1188292chr17_38849961_-0.02711396266070010.178101492724268
OVclinical_stageCAediting_1188292chr17_38849961_-0.006170282920944970.198013910830913
PAADpathologic_stageCAediting_1188271chr17_38849587_-0.000377290293353090.437466141298255
SKCMpathologic_stageCAediting_1188292chr17_38849961_-0.0384284514770237-0.173942698740544
TGCTclinical_stageCAediting_1188270chr17_38849582_-0.0128081085829187-0.300405367999587
TGCTclinical_stageCAediting_1188271chr17_38849587_-0.0297924249189739-0.28555435102029
TGCTpathologic_stageCAediting_1188270chr17_38849582_-0.008001666373742-0.319064803638801
TGCTpathologic_stageCAediting_1188271chr17_38849587_-0.0121662795781553-0.324478588362468
THCApathologic_stageCAediting_1188270chr17_38849582_-0.004745053390398140.128957839284935
THCApathologic_stageCAediting_1188280chr17_38849890_-0.04913482714567240.144865524302486
THCApathologic_stageCAediting_1188286chr17_38849917_-0.006959129925869240.369872523800879
UCECclinical_stageCAediting_1188292chr17_38849961_-0.0355377195542628-0.249944454203824

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Relation with survival for RPL23

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LGGCAediting_1188219chr17_38848421_-0.04023229872925960.0078068519267.5

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RelatedDrugs for RPL23

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for RPL23

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
RPL23C1260899Anemia, Diamond-Blackfan1GENOMICS_ENGLAND