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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TEX30 (CAeditome ID:93081) |
Gene summary for TEX30 |
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Gene information | Gene symbol | TEX30 | Gene ID | 93081 |
Gene name | testis expressed 30 | |
Synonyms | C13orf27 | |
Cytomap | 13q33.1 | |
Type of gene | protein-coding | |
Description | testis-expressed protein 30testis-expressed sequence 30 protein | |
Modification date | 20210518 | |
UniProtAcc | Q5JUR7 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for TEX30 |
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CAediting_972149(102766481, -), CAediting_972150(102767339, -), |
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RNA editing positional annotations for TEX30 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_972149 | chr13_102766481_- | exonic |
CAediting_972150 | chr13_102767339_- | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for TEX30 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TEX30 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for TEX30 |
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The effects of the RNA editing to the miRNA binding sites for TEX30 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_972149 | chr13_102766481_- | ENSG00000151287.15 | ENST00000376027 | hsa-miR-452-3p | 102766477 | 102766483 | 7mer-m8 | 102766476 | 102766497 | 140.00 | -10.01 |
CAediting_972149 | chr13_102766481_- | ENSG00000151287.15 | ENST00000376022 | hsa-miR-452-3p | 102766477 | 102766483 | 7mer-m8 | 102766476 | 102766497 | 140.00 | -10.01 |
CAediting_972149 | chr13_102766481_- | ENSG00000151287.15 | ENST00000376029 | hsa-miR-452-3p | 102766477 | 102766483 | 7mer-m8 | 102766476 | 102766497 | 140.00 | -10.01 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_972149 | chr13_102766481_- | ENSG00000151287.15 | ENST00000376027 | hsa-miR-579-3p | 102766477 | 102766483 | 7mer-m8 | 102766476 | 102766495 | 142 | -13.7 |
CAediting_972149 | chr13_102766481_- | ENSG00000151287.15 | ENST00000376027 | hsa-miR-664b-3p | 102766477 | 102766483 | 7mer-m8 | 102766476 | 102766497 | 155 | -14.93 |
CAediting_972149 | chr13_102766481_- | ENSG00000151287.15 | ENST00000376022 | hsa-miR-579-3p | 102766477 | 102766483 | 7mer-m8 | 102766476 | 102766495 | 142 | -13.7 |
CAediting_972149 | chr13_102766481_- | ENSG00000151287.15 | ENST00000376022 | hsa-miR-664b-3p | 102766477 | 102766483 | 7mer-m8 | 102766476 | 102766497 | 155 | -14.93 |
CAediting_972149 | chr13_102766481_- | ENSG00000151287.15 | ENST00000376029 | hsa-miR-579-3p | 102766477 | 102766483 | 7mer-m8 | 102766476 | 102766495 | 142 | -13.7 |
CAediting_972149 | chr13_102766481_- | ENSG00000151287.15 | ENST00000376029 | hsa-miR-664b-3p | 102766477 | 102766483 | 7mer-m8 | 102766476 | 102766497 | 155 | -14.93 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_393 | chr1_1167164_+ | ENSG00000151287.15 | ENST00000376027 | hsa-miR-200b-3p | 102766333 | 102766339 | 7mer-m8 | 102766332 | 102766353 | 147 | -14.92 |
CAediting_393 | chr1_1167164_+ | ENSG00000151287.15 | ENST00000376019 | hsa-miR-200b-3p | 102766333 | 102766339 | 7mer-m8 | 102766332 | 102766353 | 147 | -14.92 |
CAediting_393 | chr1_1167164_+ | ENSG00000151287.15 | ENST00000376022 | hsa-miR-200b-3p | 102766333 | 102766339 | 7mer-m8 | 102766332 | 102766353 | 147 | -14.92 |
CAediting_393 | chr1_1167164_+ | ENSG00000151287.15 | ENST00000376021 | hsa-miR-200b-3p | 102766333 | 102766339 | 7mer-m8 | 102766332 | 102766353 | 147 | -14.92 |
CAediting_393 | chr1_1167164_+ | ENSG00000151287.15 | ENST00000376029 | hsa-miR-200b-3p | 102766333 | 102766339 | 7mer-m8 | 102766332 | 102766353 | 147 | -14.92 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for TEX30 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TEX30 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for TEX30 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for TEX30 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TEX30 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TEX30 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |