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Editing gene: BBIP1 (CAeditome ID:92482)

Gene summary for BBIP1

Gene summary

Gene information	Gene symbol	BBIP1
	Gene ID	92482
	Gene name	BBSome interacting protein 1
	Synonyms	BBIP10\|BBS18\|NCRNA00081\|bA348N5.3
	Cytomap	10q25.2
	Type of gene	protein-coding
	Description	BBSome-interacting protein 1BBSome-interacting protein of 10 kDaUPF0604 protein
	Modification date	20210518
	UniProtAcc	A8MTZ0
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
BBIP1	GO:0005737	BBSome-interacting protein 1	19081074
BBIP1	GO:0034464	BBSome-interacting protein 1	19081074

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RNA A-to-I events for BBIP1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000214413.6

RNA A-to-I editing events in Cancer.

CAediting_782834(110900009, -), CAediting_782835(110900015, -), CAediting_782836(110900029, -), CAediting_782837(110900065, -), CAediting_782838(110900418, -), CAediting_782839(110901029, -), CAediting_782840(110901069, -), CAediting_782841(110901071, -), CAediting_782842(110901119, -), CAediting_782843(110901120, -), CAediting_782844(110901175, -), CAediting_782845(110901218, -), CAediting_782846(110901245, -), CAediting_782847(110901282, -), CAediting_782848(110901539, -), CAediting_782849(110905307, -), CAediting_782850(110905320, -), CAediting_782851(110906167, -), CAediting_782852(110906207, -), CAediting_782853(110906301, -), CAediting_782854(110906598, -), CAediting_782855(110906607, -), CAediting_782856(110906688, -), CAediting_782857(110906692, -), CAediting_782858(110906697, -), CAediting_782859(110906698, -), CAediting_782860(110906708, -), CAediting_782861(110906728, -), CAediting_782862(110906729, -), CAediting_782863(110906733, -), CAediting_782864(110906753, -), CAediting_782865(110906773, -), CAediting_782866(110906797, -), CAediting_782867(110906810, -), CAediting_782868(110906827, -), CAediting_782869(110906832, -), CAediting_782870(110906841, -), CAediting_782871(110906849, -), CAediting_782872(110907270, -), CAediting_782873(110907293, -), CAediting_782874(110907297, -), CAediting_782875(110907298, -), CAediting_782876(110907339, -), CAediting_782877(110907346, -), CAediting_782878(110907368, -), CAediting_782879(110907369, -), CAediting_782880(110907386, -), CAediting_782881(110907390, -), CAediting_782882(110907392, -), CAediting_782883(110907393, -), CAediting_782884(110907398, -), CAediting_782885(110907403, -), CAediting_782886(110907406, -), CAediting_782887(110907420, -), CAediting_782888(110907429, -), CAediting_782889(110907432, -), CAediting_782890(110907433, -), CAediting_782891(110907439, -), CAediting_782892(110907479, -), CAediting_782893(110909322, -), CAediting_782894(110909332, -), CAediting_782895(110915899, -), CAediting_782896(110915900, -),

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RNA editing positional annotations for BBIP1 using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_782838	chr10_110900418_-	nonsynonymous SNV	ENST00000423273.4	c.A146G	p.Q49R	D	.	N
CAediting_782838	chr10_110900418_-	nonsynonymous SNV	ENST00000436562.1	c.A155G	p.Q52R	D	.	N
CAediting_782838	chr10_110900418_-	nonsynonymous SNV	ENST00000447005.4	c.A155G	p.Q52R	D	.	N
CAediting_782838	chr10_110900418_-	nonsynonymous SNV	ENST00000448814.4	c.A221G	p.Q74R	D	.	N
CAediting_782838	chr10_110900418_-	nonsynonymous SNV	ENST00000605742.4	c.A221G	p.Q74R	D	.	N
CAediting_782848	chr10_110901539_-	nonsynonymous SNV	ENST00000454061.4	c.A268G	p.R90G	.	.	D

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_782834	chr10_110900009_-	UTR3
CAediting_782835	chr10_110900015_-	UTR3
CAediting_782836	chr10_110900029_-	UTR3
CAediting_782837	chr10_110900065_-	UTR3
CAediting_782838	chr10_110900418_-	exonic
CAediting_782839	chr10_110901029_-	ncRNA_exonic
CAediting_782840	chr10_110901069_-	ncRNA_exonic
CAediting_782841	chr10_110901071_-	ncRNA_exonic
CAediting_782842	chr10_110901119_-	exonic
CAediting_782843	chr10_110901120_-	exonic
CAediting_782844	chr10_110901175_-	ncRNA_exonic
CAediting_782845	chr10_110901218_-	ncRNA_exonic
CAediting_782846	chr10_110901245_-	ncRNA_exonic
CAediting_782847	chr10_110901282_-	ncRNA_exonic
CAediting_782848	chr10_110901539_-	exonic
CAediting_782849	chr10_110905307_-	intronic
CAediting_782850	chr10_110905320_-	intronic
CAediting_782851	chr10_110906167_-	intronic
CAediting_782852	chr10_110906207_-	intronic
CAediting_782853	chr10_110906301_-	intronic
CAediting_782854	chr10_110906598_-	ncRNA_exonic
CAediting_782855	chr10_110906607_-	ncRNA_exonic
CAediting_782856	chr10_110906688_-	ncRNA_exonic
CAediting_782857	chr10_110906692_-	ncRNA_exonic
CAediting_782858	chr10_110906697_-	ncRNA_exonic
CAediting_782859	chr10_110906698_-	ncRNA_exonic
CAediting_782860	chr10_110906708_-	ncRNA_exonic
CAediting_782861	chr10_110906728_-	ncRNA_exonic
CAediting_782862	chr10_110906729_-	ncRNA_exonic
CAediting_782863	chr10_110906733_-	ncRNA_exonic
CAediting_782864	chr10_110906753_-	ncRNA_exonic
CAediting_782865	chr10_110906773_-	ncRNA_exonic
CAediting_782866	chr10_110906797_-	ncRNA_exonic
CAediting_782867	chr10_110906810_-	ncRNA_exonic
CAediting_782868	chr10_110906827_-	ncRNA_exonic
CAediting_782869	chr10_110906832_-	ncRNA_exonic
CAediting_782870	chr10_110906841_-	ncRNA_exonic
CAediting_782871	chr10_110906849_-	ncRNA_exonic
CAediting_782872	chr10_110907270_-	ncRNA_exonic
CAediting_782873	chr10_110907293_-	ncRNA_exonic
CAediting_782874	chr10_110907297_-	ncRNA_exonic
CAediting_782875	chr10_110907298_-	ncRNA_exonic
CAediting_782876	chr10_110907339_-	ncRNA_exonic
CAediting_782877	chr10_110907346_-	ncRNA_exonic
CAediting_782878	chr10_110907368_-	ncRNA_exonic
CAediting_782879	chr10_110907369_-	ncRNA_exonic
CAediting_782880	chr10_110907386_-	ncRNA_exonic
CAediting_782881	chr10_110907390_-	ncRNA_exonic
CAediting_782882	chr10_110907392_-	ncRNA_exonic
CAediting_782883	chr10_110907393_-	ncRNA_exonic
CAediting_782884	chr10_110907398_-	ncRNA_exonic
CAediting_782885	chr10_110907403_-	ncRNA_exonic
CAediting_782886	chr10_110907406_-	ncRNA_exonic
CAediting_782887	chr10_110907420_-	ncRNA_exonic
CAediting_782888	chr10_110907429_-	ncRNA_exonic
CAediting_782889	chr10_110907432_-	ncRNA_exonic
CAediting_782890	chr10_110907433_-	ncRNA_exonic
CAediting_782891	chr10_110907439_-	ncRNA_exonic
CAediting_782892	chr10_110907479_-	ncRNA_exonic
CAediting_782893	chr10_110909322_-	ncRNA_intronic
CAediting_782894	chr10_110909332_-	ncRNA_intronic
CAediting_782895	chr10_110915899_-	ncRNA_intronic
CAediting_782896	chr10_110915900_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_782839	chr10_110901029_-	SINE	Alu	AluJo
CAediting_782840	chr10_110901069_-	SINE	Alu	AluJo
CAediting_782841	chr10_110901071_-	SINE	Alu	AluJo
CAediting_782842	chr10_110901119_-	SINE	Alu	AluJo
CAediting_782843	chr10_110901120_-	SINE	Alu	AluJo
CAediting_782844	chr10_110901175_-	SINE	Alu	AluJo
CAediting_782845	chr10_110901218_-	SINE	Alu	AluJo
CAediting_782846	chr10_110901245_-	SINE	Alu	AluJo
CAediting_782847	chr10_110901282_-	SINE	Alu	AluJo
CAediting_782849	chr10_110905307_-	SINE	Alu	AluY
CAediting_782850	chr10_110905320_-	SINE	Alu	AluY
CAediting_782851	chr10_110906167_-	SINE	Alu	AluY
CAediting_782852	chr10_110906207_-	SINE	Alu	AluY
CAediting_782853	chr10_110906301_-	SINE	Alu	AluY
CAediting_782854	chr10_110906598_-	SINE	Alu	AluSz
CAediting_782855	chr10_110906607_-	SINE	Alu	AluSz
CAediting_782856	chr10_110906688_-	SINE	Alu	AluSz
CAediting_782857	chr10_110906692_-	SINE	Alu	AluSz
CAediting_782858	chr10_110906697_-	SINE	Alu	AluSz
CAediting_782859	chr10_110906698_-	SINE	Alu	AluSz
CAediting_782860	chr10_110906708_-	SINE	Alu	AluSz
CAediting_782861	chr10_110906728_-	SINE	Alu	AluSz
CAediting_782862	chr10_110906729_-	SINE	Alu	AluSz
CAediting_782863	chr10_110906733_-	SINE	Alu	AluSz
CAediting_782864	chr10_110906753_-	SINE	Alu	AluSz
CAediting_782865	chr10_110906773_-	SINE	Alu	AluSz
CAediting_782866	chr10_110906797_-	SINE	Alu	AluSz
CAediting_782867	chr10_110906810_-	SINE	Alu	AluSz
CAediting_782868	chr10_110906827_-	SINE	Alu	AluSz
CAediting_782869	chr10_110906832_-	SINE	Alu	AluSz
CAediting_782870	chr10_110906841_-	SINE	Alu	AluSz
CAediting_782871	chr10_110906849_-	SINE	Alu	AluSz
CAediting_782872	chr10_110907270_-	SINE	Alu	AluJo
CAediting_782873	chr10_110907293_-	SINE	Alu	AluJo
CAediting_782874	chr10_110907297_-	SINE	Alu	AluJo
CAediting_782875	chr10_110907298_-	SINE	Alu	AluJo
CAediting_782876	chr10_110907339_-	SINE	Alu	AluJo
CAediting_782877	chr10_110907346_-	SINE	Alu	AluJo
CAediting_782878	chr10_110907368_-	SINE	Alu	AluJo
CAediting_782879	chr10_110907369_-	SINE	Alu	AluJo
CAediting_782880	chr10_110907386_-	SINE	Alu	AluJo
CAediting_782881	chr10_110907390_-	SINE	Alu	AluJo
CAediting_782882	chr10_110907392_-	SINE	Alu	AluJo
CAediting_782883	chr10_110907393_-	SINE	Alu	AluJo
CAediting_782884	chr10_110907398_-	SINE	Alu	AluJo
CAediting_782885	chr10_110907403_-	SINE	Alu	AluJo
CAediting_782886	chr10_110907406_-	SINE	Alu	AluJo
CAediting_782887	chr10_110907420_-	SINE	Alu	AluJo
CAediting_782888	chr10_110907429_-	SINE	Alu	AluJo
CAediting_782889	chr10_110907432_-	SINE	Alu	AluJo
CAediting_782890	chr10_110907433_-	SINE	Alu	AluJo
CAediting_782891	chr10_110907439_-	SINE	Alu	AluJo
CAediting_782892	chr10_110907479_-	SINE	Alu	AluJo
CAediting_782893	chr10_110909322_-	SINE	Alu	AluSc8
CAediting_782894	chr10_110909332_-	SINE	Alu	AluSc8
CAediting_782895	chr10_110915899_-	SINE	Alu	AluSz6
CAediting_782896	chr10_110915900_-	SINE	Alu	AluSz6

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RNA A-to-I editing events in the alternative splicing sites for BBIP1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_782843	chr10_110901120_-	110901120:110901142	3SS	3+0i	ATTTGTTCTTATTTTTGTAGAGA	7.83	ATTTGTTCTTATTTTTGTAGAGG	7.54
IR	CAediting_782843	chr10_110901120_-	110901120:110901142	3SS	3+0i	ATTTGTTCTTATTTTTGTAGAGA	7.83	ATTTGTTCTTATTTTTGTAGAGG	7.54
ES	CAediting_782848	chr10_110901539_-	110901531:110901539	5SS	3+0i	AGGTATGTA	-24.67	GGGTATGTA	-28.26
IR	CAediting_782848	chr10_110901539_-	110901531:110901539	5SS	3+0i	AGGTATGTA	-24.67	GGGTATGTA	-28.26
MEX_1	CAediting_782848	chr10_110901539_-	110901531:110901539	5SS	3+0i	AGGTATGTA	-24.67	GGGTATGTA	-28.26

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000214413.6.BBIP1.

Correlation between RNA A-to-I editing and PSI for ENSG00000214413.6.BBIP1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for BBIP1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for BBIP1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for BBIP1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000448814	hsa-miR-146b-3p	110900027	110900033	7mer-m8	110900026	110900045	145.00	-18.64
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000448814	hsa-miR-1914-5p	110900028	110900034	7mer-m8	110900027	110900048	152.00	-26.41
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000448814	hsa-miR-6529-3p	110900029	110900035	7mer-m8	110900028	110900049	148.00	-17.39
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000448814	hsa-miR-6889-3p	110900029	110900035	7mer-m8	110900028	110900047	145.00	-17.25
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000447005	hsa-miR-146b-3p	110900027	110900033	7mer-m8	110900026	110900045	145.00	-18.64
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000447005	hsa-miR-1914-5p	110900028	110900034	7mer-m8	110900027	110900048	152.00	-26.41
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000447005	hsa-miR-6529-3p	110900029	110900035	7mer-m8	110900028	110900049	148.00	-17.39
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000447005	hsa-miR-6889-3p	110900029	110900035	7mer-m8	110900028	110900047	145.00	-17.25
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-1537-5p	110900014	110900019	6mer	110900013	110900034	140.00	-16.05
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-320a-3p	110900011	110900017	7mer-m8	110900010	110900031	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-320b	110900011	110900017	7mer-m8	110900010	110900031	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-320b	110900011	110900017	7mer-m8	110900010	110900031	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-320c	110900011	110900017	7mer-m8	110900010	110900029	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-320c	110900011	110900017	7mer-m8	110900010	110900029	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-320d	110900011	110900017	7mer-m8	110900010	110900028	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-320d	110900011	110900017	7mer-m8	110900010	110900028	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-4429	110900011	110900017	7mer-m8	110900010	110900029	143.00	-10.52
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-4742-3p	110900015	110900021	7mer-m8	110900014	110900036	157.00	-18.87
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-4999-5p	110900014	110900020	7mer-m8	110900013	110900033	145.00	-12.22
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-1537-5p	110900014	110900019	6mer	110900013	110900034	140.00	-16.05
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-320a-3p	110900011	110900017	7mer-m8	110900010	110900031	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-320b	110900011	110900017	7mer-m8	110900010	110900031	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-320b	110900011	110900017	7mer-m8	110900010	110900031	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-320c	110900011	110900017	7mer-m8	110900010	110900029	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-320c	110900011	110900017	7mer-m8	110900010	110900029	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-320d	110900011	110900017	7mer-m8	110900010	110900028	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-320d	110900011	110900017	7mer-m8	110900010	110900028	151.00	-11.36
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-4429	110900011	110900017	7mer-m8	110900010	110900029	143.00	-10.52
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-4742-3p	110900015	110900021	7mer-m8	110900014	110900036	157.00	-18.87
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-4999-5p	110900014	110900020	7mer-m8	110900013	110900033	145.00	-12.22
CAediting_782840	chr10_110901069_-	ENSG00000214413.6	ENST00000398289	hsa-miR-375-3p	110901064	110901070	7mer-m8	110901063	110901085	162.00	-19.09
CAediting_782840	chr10_110901069_-	ENSG00000214413.6	ENST00000398289	hsa-miR-5707	110901068	110901075	8mer-1a	110901068	110901089	142.00	-12.52
CAediting_782841	chr10_110901071_-	ENSG00000214413.6	ENST00000398289	hsa-miR-6885-3p	110901067	110901073	7mer-m8	110901066	110901085	141.00	-10.02
CAediting_782834	chr10_110900009_-	ENSG00000214413.6	ENST00000448814	hsa-let-7a-3p	110900005	110900011	7mer-m8	110900004	110900023	141.00	-5.51
CAediting_782834	chr10_110900009_-	ENSG00000214413.6	ENST00000448814	hsa-let-7a-3p	110900005	110900011	7mer-m8	110900004	110900023	141.00	-5.51
CAediting_782834	chr10_110900009_-	ENSG00000214413.6	ENST00000448814	hsa-let-7b-3p	110900005	110900011	7mer-m8	110900004	110900025	140.00	-4.15
CAediting_782834	chr10_110900009_-	ENSG00000214413.6	ENST00000448814	hsa-let-7f-1-3p	110900005	110900011	7mer-m8	110900004	110900029	143.00	-11.21
CAediting_782834	chr10_110900009_-	ENSG00000214413.6	ENST00000448814	hsa-miR-98-3p	110900005	110900011	7mer-m8	110900004	110900026	141.00	-3.55
CAediting_782834	chr10_110900009_-	ENSG00000214413.6	ENST00000447005	hsa-let-7a-3p	110900005	110900011	7mer-m8	110900004	110900023	141.00	-5.51
CAediting_782834	chr10_110900009_-	ENSG00000214413.6	ENST00000447005	hsa-let-7a-3p	110900005	110900011	7mer-m8	110900004	110900023	141.00	-5.51
CAediting_782834	chr10_110900009_-	ENSG00000214413.6	ENST00000447005	hsa-let-7b-3p	110900005	110900011	7mer-m8	110900004	110900025	140.00	-4.15
CAediting_782834	chr10_110900009_-	ENSG00000214413.6	ENST00000447005	hsa-let-7f-1-3p	110900005	110900011	7mer-m8	110900004	110900029	143.00	-11.21
CAediting_782834	chr10_110900009_-	ENSG00000214413.6	ENST00000447005	hsa-miR-98-3p	110900005	110900011	7mer-m8	110900004	110900026	141.00	-3.55

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000448814	hsa-miR-188-5p	110900024	110900030	7mer-m8	110900023	110900041	148	-17.21
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-3613-5p	110900014	110900019	6mer	110900013	110900034	140	-13
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000448814	hsa-miR-382-5p	110900012	110900018	7mer-m8	110900011	110900032	144	-9.71
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000448814	hsa-miR-623	110900025	110900031	7mer-m8	110900024	110900049	147	-21.74
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000448814	hsa-miR-6780b-3p	110900025	110900032	8mer-1a	110900025	110900045	148	-17.73
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000448814	hsa-miR-6866-3p	110900024	110900030	7mer-m8	110900023	110900041	141	-17.31
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000447005	hsa-miR-188-5p	110900024	110900030	7mer-m8	110900023	110900041	148	-17.21
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-3613-5p	110900014	110900019	6mer	110900013	110900034	140	-13
CAediting_782835	chr10_110900015_-	ENSG00000214413.6	ENST00000447005	hsa-miR-382-5p	110900012	110900018	7mer-m8	110900011	110900032	144	-9.71
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000447005	hsa-miR-623	110900025	110900031	7mer-m8	110900024	110900049	147	-21.74
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000447005	hsa-miR-6780b-3p	110900025	110900032	8mer-1a	110900025	110900045	148	-17.73
CAediting_782836	chr10_110900029_-	ENSG00000214413.6	ENST00000447005	hsa-miR-6866-3p	110900024	110900030	7mer-m8	110900023	110900041	141	-17.31
CAediting_782838	chr10_110900418_-	ENSG00000214413.6	ENST00000454061	hsa-miR-4778-5p	110900413	110900420	8mer-1a	110900413	110900434	140	-7.87
CAediting_782838	chr10_110900418_-	ENSG00000214413.6	ENST00000454061	hsa-miR-5008-3p	110900416	110900423	8mer-1a	110900416	110900437	145	-11.53
CAediting_782838	chr10_110900418_-	ENSG00000214413.6	ENST00000454061	hsa-miR-6737-3p	110900416	110900423	8mer-1a	110900416	110900437	142	-13.01
CAediting_782841	chr10_110901071_-	ENSG00000214413.6	ENST00000398289	hsa-miR-8055	110901071	110901077	7mer-m8	110901070	110901092	151	-11.52
CAediting_782840	chr10_110901069_-	ENSG00000214413.6	ENST00000398289	hsa-miR-8068	110901065	110901072	8mer-1a	110901065	110901085	143	-12.36
CAediting_782841	chr10_110901071_-	ENSG00000214413.6	ENST00000398289	hsa-miR-8068	110901065	110901072	8mer-1a	110901065	110901085	143	-12.36
CAediting_782838	chr10_110900418_-	ENSG00000214413.6	ENST00000398289	hsa-miR-4778-5p	110900413	110900420	8mer-1a	110900413	110900434	140	-7.87
CAediting_782838	chr10_110900418_-	ENSG00000214413.6	ENST00000398289	hsa-miR-5008-3p	110900416	110900423	8mer-1a	110900416	110900437	145	-11.53
CAediting_782838	chr10_110900418_-	ENSG00000214413.6	ENST00000398289	hsa-miR-6737-3p	110900416	110900423	8mer-1a	110900416	110900437	142	-13.01

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229415	chr17_67471547_+	ENSG00000214413.6	ENST00000448814	hsa-miR-548aa	110899928	110899933	6mer	110899927	110899954	144	-20.32
CAediting_77128	chr1_85133844_+	ENSG00000214413.6	ENST00000448814	hsa-miR-4423-3p	110899519	110899525	7mer-m8	110899518	110899538	140	-14.25
CAediting_396018	chr5_1062918_-	ENSG00000214413.6	ENST00000448814	hsa-miR-4635	110899579	110899585	7mer-m8	110899578	110899598	146	-13.23
CAediting_414656	chr5_72878640_+	ENSG00000214413.6	ENST00000448814	hsa-miR-4804-3p	110899081	110899087	7mer-m8	110899080	110899100	156	-14.57
CAediting_414656	chr5_72878640_+	ENSG00000214413.6	ENST00000448814	hsa-miR-4804-3p	110899603	110899609	7mer-m8	110899602	110899622	145	-13.84

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for BBIP1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for BBIP1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
THCA	CAediting_782876	chr10_110907339_-	0.000322037569657063	0.455954557550489	.	.	.	.
THCA	CAediting_782888	chr10_110907429_-	0.0358350888567298	0.196812117978194	.	.	.	.
THCA	CAediting_782892	chr10_110907479_-	0.00303349463500529	0.351806116542454	.	.	.	.

Top

Relation with cancer stages for BBIP1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for BBIP1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for BBIP1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for BBIP1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
BBIP1	C0752166	Bardet-Biedl Syndrome	1	ORPHANET
BBIP1	C3806174	BARDET-BIEDL SYNDROME 18	1	CTD_human;GENOMICS_ENGLAND

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene