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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CD6 (CAeditome ID:923) |
Gene summary for CD6 |
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Gene information | Gene symbol | CD6 | Gene ID | 923 |
Gene name | CD6 molecule | |
Synonyms | TP120 | |
Cytomap | 11q12.2 | |
Type of gene | protein-coding | |
Description | T-cell differentiation antigen CD6CD6 antigenT12 | |
Modification date | 20210518 | |
UniProtAcc | P30203 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
CD6 | GO:0001530 | T-cell differentiation antigen CD6 | 17601777 |
CD6 | GO:0002438 | T-cell differentiation antigen CD6 | 17601777 |
CD6 | GO:0031663 | T-cell differentiation antigen CD6 | 17601777 |
CD6 | GO:0032496 | T-cell differentiation antigen CD6 | 17601777 |
CD6 | GO:1900017 | T-cell differentiation antigen CD6 | 17601777 |
CD6 | GO:0001772 | T-cell differentiation antigen CD6 | 15294938 |
CD6 | GO:0031226 | T-cell differentiation antigen CD6 | 15294938 |
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RNA A-to-I events for CD6 |
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CAediting_816416(60980382, +), CAediting_816417(60980417, +), CAediting_816418(60980735, +), CAediting_816419(60980760, +), CAediting_816420(60980761, +), CAediting_816421(60990351, +), CAediting_816422(60990354, +), CAediting_816423(60990459, +), CAediting_816424(60992021, +), CAediting_816425(60992090, +), CAediting_816426(60992100, +), CAediting_816427(60992713, +), CAediting_816428(60992774, +), CAediting_816429(60994314, +), CAediting_816430(60994320, +), CAediting_816431(60994682, +), CAediting_816432(60994699, +), CAediting_816433(60994700, +), CAediting_816434(60994729, +), CAediting_816435(60994783, +), CAediting_816436(60995193, +), CAediting_816437(60995214, +), CAediting_816438(60995294, +), CAediting_816439(60995325, +), CAediting_816440(60997166, +), CAediting_816441(60997267, +), CAediting_816442(60997284, +), CAediting_816443(61003034, +), CAediting_816444(61003469, +), CAediting_816445(61003568, +), CAediting_816446(61007595, +), |
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RNA editing positional annotations for CD6 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_816446 | chr11_61007595_+ | nonsynonymous SNV | ENST00000313421.10 | c.A154G | p.S52G | T | P | D |
CAediting_816446 | chr11_61007595_+ | nonsynonymous SNV | ENST00000344931.8 | c.A154G | p.S52G | T | P | D |
CAediting_816446 | chr11_61007595_+ | nonsynonymous SNV | ENST00000352009.8 | c.A154G | p.S52G | T | P | D |
CAediting_816446 | chr11_61007595_+ | nonsynonymous SNV | ENST00000433107.5 | c.A154G | p.S52G | T | P | D |
CAediting_816446 | chr11_61007595_+ | nonsynonymous SNV | ENST00000452451.5 | c.A154G | p.S52G | T | P | D |
CAediting_816446 | chr11_61007595_+ | nonsynonymous SNV | ENST00000542157.4 | c.A154G | p.S52G | T | P | D |
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CAeditome ID | Position | Variant type |
CAediting_816416 | chr11_60980382_+ | ncRNA_intronic |
CAediting_816417 | chr11_60980417_+ | ncRNA_intronic |
CAediting_816418 | chr11_60980735_+ | ncRNA_intronic |
CAediting_816419 | chr11_60980760_+ | ncRNA_intronic |
CAediting_816420 | chr11_60980761_+ | ncRNA_intronic |
CAediting_816421 | chr11_60990351_+ | ncRNA_intronic |
CAediting_816422 | chr11_60990354_+ | ncRNA_intronic |
CAediting_816423 | chr11_60990459_+ | ncRNA_intronic |
CAediting_816424 | chr11_60992021_+ | ncRNA_intronic |
CAediting_816425 | chr11_60992090_+ | ncRNA_intronic |
CAediting_816426 | chr11_60992100_+ | ncRNA_intronic |
CAediting_816427 | chr11_60992713_+ | ncRNA_intronic |
CAediting_816428 | chr11_60992774_+ | ncRNA_intronic |
CAediting_816429 | chr11_60994314_+ | ncRNA_intronic |
CAediting_816430 | chr11_60994320_+ | ncRNA_intronic |
CAediting_816431 | chr11_60994682_+ | ncRNA_intronic |
CAediting_816432 | chr11_60994699_+ | ncRNA_intronic |
CAediting_816433 | chr11_60994700_+ | ncRNA_intronic |
CAediting_816434 | chr11_60994729_+ | ncRNA_intronic |
CAediting_816435 | chr11_60994783_+ | ncRNA_intronic |
CAediting_816436 | chr11_60995193_+ | ncRNA_intronic |
CAediting_816437 | chr11_60995214_+ | ncRNA_intronic |
CAediting_816438 | chr11_60995294_+ | ncRNA_intronic |
CAediting_816439 | chr11_60995325_+ | ncRNA_intronic |
CAediting_816440 | chr11_60997166_+ | ncRNA_intronic |
CAediting_816441 | chr11_60997267_+ | ncRNA_intronic |
CAediting_816442 | chr11_60997284_+ | ncRNA_intronic |
CAediting_816443 | chr11_61003034_+ | ncRNA_intronic |
CAediting_816444 | chr11_61003469_+ | ncRNA_intronic |
CAediting_816445 | chr11_61003568_+ | ncRNA_intronic |
CAediting_816446 | chr11_61007595_+ | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_816416 | chr11_60980382_+ | SINE | Alu | AluJb |
CAediting_816417 | chr11_60980417_+ | SINE | Alu | AluJb |
CAediting_816418 | chr11_60980735_+ | SINE | Alu | AluSx1 |
CAediting_816419 | chr11_60980760_+ | SINE | Alu | AluSx1 |
CAediting_816420 | chr11_60980761_+ | SINE | Alu | AluSx1 |
CAediting_816421 | chr11_60990351_+ | SINE | Alu | AluSz |
CAediting_816422 | chr11_60990354_+ | SINE | Alu | AluSz |
CAediting_816423 | chr11_60990459_+ | SINE | Alu | AluSz |
CAediting_816424 | chr11_60992021_+ | SINE | Alu | AluJo |
CAediting_816425 | chr11_60992090_+ | SINE | Alu | AluJo |
CAediting_816426 | chr11_60992100_+ | SINE | Alu | AluJo |
CAediting_816427 | chr11_60992713_+ | SINE | Alu | AluSx |
CAediting_816428 | chr11_60992774_+ | SINE | Alu | AluSx |
CAediting_816429 | chr11_60994314_+ | SINE | Alu | AluSz |
CAediting_816430 | chr11_60994320_+ | SINE | Alu | AluSz |
CAediting_816436 | chr11_60995193_+ | SINE | Alu | AluSx |
CAediting_816437 | chr11_60995214_+ | SINE | Alu | AluSx |
CAediting_816438 | chr11_60995294_+ | SINE | Alu | AluSx |
CAediting_816439 | chr11_60995325_+ | SINE | Alu | AluSx |
CAediting_816440 | chr11_60997166_+ | SINE | Alu | AluSx |
CAediting_816441 | chr11_60997267_+ | SINE | Alu | AluSx |
CAediting_816442 | chr11_60997284_+ | SINE | Alu | AluSx |
CAediting_816443 | chr11_61003034_+ | SINE | Alu | AluSx |
CAediting_816444 | chr11_61003469_+ | SINE | Alu | AluSz6 |
CAediting_816445 | chr11_61003568_+ | SINE | Alu | AluSz6 |
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RNA A-to-I editing events in the alternative splicing sites for CD6 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CD6 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CD6 |
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The effects of the RNA editing to the miRNA binding sites for CD6 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_816446 | chr11_61007595_+ | ENSG00000013725.13 | ENST00000542254 | hsa-miR-6743-3p | 61007590 | 61007597 | 8mer-1a | 61007575 | 61007597 | 144.00 | -16.60 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_846604 | chr11_93733708_- | ENSG00000013725.13 | ENST00000542254 | hsa-miR-1304-3p | 60982724 | 60982730 | 7mer-m8 | 60982710 | 60982731 | 143 | -15.04 |
CAediting_1054808 | chr15_66496985_- | ENSG00000013725.13 | ENST00000313421 | hsa-miR-4512 | 61019658 | 61019664 | 7mer-m8 | 61019642 | 61019665 | 151 | -25.43 |
CAediting_1054808 | chr15_66496985_- | ENSG00000013725.13 | ENST00000313421 | hsa-miR-4512 | 61020187 | 61020193 | 7mer-m8 | 61020174 | 61020194 | 151 | -21.8 |
CAediting_1368054 | chr19_46709310_- | ENSG00000013725.13 | ENST00000313421 | hsa-miR-320e | 61019401 | 61019408 | 8mer-1a | 61019388 | 61019408 | 147 | -20.13 |
CAediting_396018 | chr5_1062918_- | ENSG00000013725.13 | ENST00000313421 | hsa-miR-4635 | 61019672 | 61019678 | 7mer-m8 | 61019659 | 61019679 | 146 | -15.45 |
CAediting_524911 | chr7_5495852_- | ENSG00000013725.13 | ENST00000313421 | hsa-miR-589-3p | 61020335 | 61020342 | 8mer-1a | 61020318 | 61020342 | 143 | -18.36 |
CAediting_1368054 | chr19_46709310_- | ENSG00000013725.13 | ENST00000542254 | hsa-miR-320e | 61006598 | 61006605 | 8mer-1a | 61006588 | 61006605 | 140 | -16.04 |
CAediting_604450 | chr7_133034877_- | ENSG00000013725.13 | ENST00000344931 | hsa-miR-3654 | 61017510 | 61017517 | 8mer-1a | 61017499 | 61017517 | 143 | -15.11 |
CAediting_1054808 | chr15_66496985_- | ENSG00000013725.13 | ENST00000344931 | hsa-miR-4512 | 61019658 | 61019664 | 7mer-m8 | 61019642 | 61019665 | 151 | -25.43 |
CAediting_1054808 | chr15_66496985_- | ENSG00000013725.13 | ENST00000344931 | hsa-miR-4512 | 61020187 | 61020193 | 7mer-m8 | 61020174 | 61020194 | 151 | -21.8 |
CAediting_1368054 | chr19_46709310_- | ENSG00000013725.13 | ENST00000344931 | hsa-miR-320e | 61019401 | 61019408 | 8mer-1a | 61019388 | 61019408 | 147 | -20.13 |
CAediting_396018 | chr5_1062918_- | ENSG00000013725.13 | ENST00000344931 | hsa-miR-4635 | 61019672 | 61019678 | 7mer-m8 | 61019659 | 61019679 | 146 | -15.45 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_580943 | chr7_100356700_+ | ENSG00000013725.13 | ENST00000313421 | hsa-miR-6840-3p | 61019903 | 61019909 | 7mer-m8 | 61019886 | 61019910 | 143 | -19.97 |
CAediting_580943 | chr7_100356700_+ | ENSG00000013725.13 | ENST00000313421 | hsa-miR-6840-3p | 61020230 | 61020237 | 8mer-1a | 61020216 | 61020237 | 141 | -16.8 |
CAediting_580943 | chr7_100356700_+ | ENSG00000013725.13 | ENST00000344931 | hsa-miR-6840-3p | 61019903 | 61019909 | 7mer-m8 | 61019886 | 61019910 | 143 | -19.97 |
CAediting_580943 | chr7_100356700_+ | ENSG00000013725.13 | ENST00000344931 | hsa-miR-6840-3p | 61020230 | 61020237 | 8mer-1a | 61020216 | 61020237 | 141 | -16.8 |
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The effects of the RNA editing to the stability of the RNA structures for CD6 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CD6 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for CD6 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for CD6 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CD6 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CD6 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
CD6 | C0026769 | Multiple Sclerosis | 2 | CTD_human |
CD6 | C0751324 | Multiple Sclerosis, Acute Fulminating | 2 | CTD_human |