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Editing gene: OXNAD1 (CAeditome ID:92106)

Gene summary for OXNAD1

Gene summary

Gene information	Gene symbol	OXNAD1
	Gene ID	92106
	Gene name	oxidoreductase NAD binding domain containing 1
	Synonyms	-
	Cytomap	3p25.1-p24.3
	Type of gene	protein-coding
	Description	oxidoreductase NAD-binding domain-containing protein 1
	Modification date	20210518
	UniProtAcc	Q96HP4
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for OXNAD1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000154814.12

RNA A-to-I editing events in Cancer.

CAediting_261534(16266439, +), CAediting_261535(16310740, +), CAediting_261536(16310788, +), CAediting_261537(16310789, +), CAediting_261538(16310791, +), CAediting_261539(16310794, +), CAediting_261540(16310800, +), CAediting_261541(16310804, +), CAediting_261542(16310810, +), CAediting_261543(16310814, +), CAediting_261544(16310825, +), CAediting_261545(16310828, +), CAediting_261546(16310829, +), CAediting_261547(16310839, +), CAediting_261548(16310861, +), CAediting_261549(16310869, +), CAediting_261550(16310870, +), CAediting_261551(16310875, +), CAediting_261552(16310879, +), CAediting_261553(16310886, +), CAediting_261554(16310892, +), CAediting_261555(16310896, +), CAediting_261556(16310897, +), CAediting_261557(16310901, +), CAediting_261558(16310935, +), CAediting_261559(16310940, +), CAediting_261560(16310942, +), CAediting_261561(16311263, +), CAediting_261562(16311294, +), CAediting_261563(16311295, +), CAediting_261564(16311312, +), CAediting_261565(16311335, +), CAediting_261566(16311372, +), CAediting_261567(16311373, +), CAediting_261568(16311392, +), CAediting_261569(16311401, +), CAediting_261570(16311414, +),

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RNA editing positional annotations for OXNAD1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_261534	chr3_16266439_+	ncRNA_intronic
CAediting_261535	chr3_16310740_+	intronic
CAediting_261536	chr3_16310788_+	intronic
CAediting_261537	chr3_16310789_+	intronic
CAediting_261538	chr3_16310791_+	intronic
CAediting_261539	chr3_16310794_+	intronic
CAediting_261540	chr3_16310800_+	intronic
CAediting_261541	chr3_16310804_+	intronic
CAediting_261542	chr3_16310810_+	intronic
CAediting_261543	chr3_16310814_+	intronic
CAediting_261544	chr3_16310825_+	intronic
CAediting_261545	chr3_16310828_+	intronic
CAediting_261546	chr3_16310829_+	intronic
CAediting_261547	chr3_16310839_+	intronic
CAediting_261548	chr3_16310861_+	intronic
CAediting_261549	chr3_16310869_+	intronic
CAediting_261550	chr3_16310870_+	intronic
CAediting_261551	chr3_16310875_+	intronic
CAediting_261552	chr3_16310879_+	intronic
CAediting_261553	chr3_16310886_+	intronic
CAediting_261554	chr3_16310892_+	intronic
CAediting_261555	chr3_16310896_+	intronic
CAediting_261556	chr3_16310897_+	intronic
CAediting_261557	chr3_16310901_+	intronic
CAediting_261558	chr3_16310935_+	intronic
CAediting_261559	chr3_16310940_+	intronic
CAediting_261560	chr3_16310942_+	intronic
CAediting_261561	chr3_16311263_+	intronic
CAediting_261562	chr3_16311294_+	intronic
CAediting_261563	chr3_16311295_+	intronic
CAediting_261564	chr3_16311312_+	intronic
CAediting_261565	chr3_16311335_+	intronic
CAediting_261566	chr3_16311372_+	intronic
CAediting_261567	chr3_16311373_+	intronic
CAediting_261568	chr3_16311392_+	intronic
CAediting_261569	chr3_16311401_+	intronic
CAediting_261570	chr3_16311414_+	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_261534	chr3_16266439_+	SINE	Alu	AluSg
CAediting_261535	chr3_16310740_+	SINE	Alu	AluSp
CAediting_261536	chr3_16310788_+	SINE	Alu	AluSp
CAediting_261537	chr3_16310789_+	SINE	Alu	AluSp
CAediting_261538	chr3_16310791_+	SINE	Alu	AluSp
CAediting_261539	chr3_16310794_+	SINE	Alu	AluSp
CAediting_261540	chr3_16310800_+	SINE	Alu	AluSp
CAediting_261541	chr3_16310804_+	SINE	Alu	AluSp
CAediting_261542	chr3_16310810_+	SINE	Alu	AluSp
CAediting_261543	chr3_16310814_+	SINE	Alu	AluSp
CAediting_261544	chr3_16310825_+	SINE	Alu	AluSp
CAediting_261545	chr3_16310828_+	SINE	Alu	AluSp
CAediting_261546	chr3_16310829_+	SINE	Alu	AluSp
CAediting_261547	chr3_16310839_+	SINE	Alu	AluSp
CAediting_261548	chr3_16310861_+	SINE	Alu	AluSp
CAediting_261549	chr3_16310869_+	SINE	Alu	AluSp
CAediting_261550	chr3_16310870_+	SINE	Alu	AluSp
CAediting_261551	chr3_16310875_+	SINE	Alu	AluSp
CAediting_261552	chr3_16310879_+	SINE	Alu	AluSp
CAediting_261553	chr3_16310886_+	SINE	Alu	AluSp
CAediting_261554	chr3_16310892_+	SINE	Alu	AluSp
CAediting_261555	chr3_16310896_+	SINE	Alu	AluSp
CAediting_261556	chr3_16310897_+	SINE	Alu	AluSp
CAediting_261557	chr3_16310901_+	SINE	Alu	AluSp
CAediting_261558	chr3_16310935_+	SINE	Alu	AluSp
CAediting_261559	chr3_16310940_+	SINE	Alu	AluSp
CAediting_261560	chr3_16310942_+	SINE	Alu	AluSp
CAediting_261561	chr3_16311263_+	SINE	Alu	AluSx
CAediting_261562	chr3_16311294_+	SINE	Alu	AluSx
CAediting_261563	chr3_16311295_+	SINE	Alu	AluSx
CAediting_261564	chr3_16311312_+	SINE	Alu	AluSx
CAediting_261565	chr3_16311335_+	SINE	Alu	AluSx
CAediting_261566	chr3_16311372_+	SINE	Alu	AluSx
CAediting_261567	chr3_16311373_+	SINE	Alu	AluSx
CAediting_261568	chr3_16311392_+	SINE	Alu	AluSx
CAediting_261569	chr3_16311401_+	SINE	Alu	AluSx
CAediting_261570	chr3_16311414_+	SINE	Alu	AluSx

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RNA A-to-I editing events in the alternative splicing sites for OXNAD1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000154814.12.OXNAD1.

Correlation between RNA A-to-I editing and PSI for ENSG00000154814.12.OXNAD1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for OXNAD1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ESCA.CAediting_261537.ENSG00000154814.OXNAD1.png
Soverview

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Protein coding region RNA A-to-I editings for OXNAD1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for OXNAD1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000154814.12	ENST00000627468	hsa-miR-624-3p	16305407	16305413	7mer-m8	16305393	16305414	147	-16.74
CAediting_748296	chr10_51299626_+	ENSG00000154814.12	ENST00000442255	hsa-miR-605-3p	16294975	16294981	7mer-m8	16294960	16294982	142	-16.49
CAediting_980496	chr14_31014685_-	ENSG00000154814.12	ENST00000285083	hsa-miR-624-3p	16305407	16305413	7mer-m8	16305393	16305414	147	-16.74
CAediting_748296	chr10_51299626_+	ENSG00000154814.12	ENST00000452581	hsa-miR-605-3p	16294975	16294981	7mer-m8	16294960	16294982	142	-16.49
CAediting_393	chr1_1167164_+	ENSG00000154814.12	ENST00000606098	hsa-miR-200b-3p	16349727	16349733	7mer-m8	16349712	16349734	151	-15.12
CAediting_77128	chr1_85133844_+	ENSG00000154814.12	ENST00000627468	hsa-miR-4423-3p	16305105	16305111	7mer-m8	16305092	16305112	140	-15.77
CAediting_524911	chr7_5495852_-	ENSG00000154814.12	ENST00000627468	hsa-miR-589-3p	16304560	16304567	8mer-1a	16304544	16304567	142	-14.82
CAediting_86358	chr1_109598906_+	ENSG00000154814.12	ENST00000605932	hsa-miR-197-5p	16337225	16337232	8mer-1a	16337208	16337232	149	-22.42
CAediting_442554	chr5_154685830_+	ENSG00000154814.12	ENST00000442255	hsa-miR-1303	16303497	16303503	7mer-m8	16303483	16303504	160	-20.47
CAediting_86358	chr1_109598906_+	ENSG00000154814.12	ENST00000435829	hsa-miR-197-5p	16337225	16337232	8mer-1a	16337208	16337232	149	-22.42
CAediting_77128	chr1_85133844_+	ENSG00000154814.12	ENST00000285083	hsa-miR-4423-3p	16305105	16305111	7mer-m8	16305092	16305112	140	-15.77
CAediting_524911	chr7_5495852_-	ENSG00000154814.12	ENST00000285083	hsa-miR-589-3p	16304560	16304567	8mer-1a	16304544	16304567	142	-14.82
CAediting_1524209	chrX_134546392_-	ENSG00000154814.12	ENST00000627468	hsa-miR-503-5p	16305794	16305799	6mer	16305778	16305800	147	-20.21
CAediting_1524209	chrX_134546392_-	ENSG00000154814.12	ENST00000285083	hsa-miR-503-5p	16305794	16305799	6mer	16305778	16305800	147	-20.21

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000154814.12	ENST00000627468	hsa-miR-200b-3p	16305422	16305428	7mer-m8	16305407	16305429	149	-12.12
CAediting_524911	chr7_5495852_-	ENSG00000154814.12	ENST00000627468	hsa-miR-589-3p	16304770	16304776	7mer-m8	16304753	16304777	153	-15.91
CAediting_1351755	chr19_40282625_-	ENSG00000154814.12	ENST00000627468	hsa-miR-641	16304217	16304222	6mer	16304201	16304223	148	-15.9
CAediting_1399425	chr20_1392958_-	ENSG00000154814.12	ENST00000442255	hsa-miR-6869-5p	16303599	16303605	7mer-m8	16303586	16303606	142	-14.09
CAediting_393	chr1_1167164_+	ENSG00000154814.12	ENST00000285083	hsa-miR-200b-3p	16305422	16305428	7mer-m8	16305407	16305429	149	-12.12
CAediting_524911	chr7_5495852_-	ENSG00000154814.12	ENST00000285083	hsa-miR-589-3p	16304770	16304776	7mer-m8	16304753	16304777	153	-15.91
CAediting_1351755	chr19_40282625_-	ENSG00000154814.12	ENST00000285083	hsa-miR-641	16304217	16304222	6mer	16304201	16304223	148	-15.9

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for OXNAD1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for OXNAD1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
STAD	CAediting_261549	chr3_16310869_+	.	.	.	.	0.0031660471105436	0.368981750337868

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Relation with cancer stages for OXNAD1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for OXNAD1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
STAD	CAediting_261552	chr3_16310879_+	0.00158261702327567	0.0181248	0.0010499

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RelatedDrugs for OXNAD1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for OXNAD1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene