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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: ZMYM3 (CAeditome ID:9203) |
Gene summary for ZMYM3 |
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Gene information | Gene symbol | ZMYM3 | Gene ID | 9203 |
Gene name | zinc finger MYM-type containing 3 | |
Synonyms | DXS6673E|MYM|XFIM|ZNF198L2|ZNF261 | |
Cytomap | Xq13.1 | |
Type of gene | protein-coding | |
Description | zinc finger MYM-type protein 3zinc finger protein 261zinc finger, MYM-type 3 | |
Modification date | 20210518 | |
UniProtAcc | Q14202 | |
Context | - 33115829(Distinct Genomic Alterations in Prostate Tumors Derived from African American Men) |
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Gene | GO ID | GO term | PubMed ID |
ZMYM3 | GO:0005654 | Zinc finger MYM-type protein 3 | 0000052 |
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RNA A-to-I events for ZMYM3 |
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CAediting_1510920(71252833, -), |
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RNA editing positional annotations for ZMYM3 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1510920 | chrX_71252833_- | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for ZMYM3 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZMYM3 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for ZMYM3 |
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The effects of the RNA editing to the miRNA binding sites for ZMYM3 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229413 | chr17_67471544_+ | ENSG00000147130.13 | ENST00000314425 | hsa-miR-548aa | 71240181 | 71240187 | 7mer-m8 | 71240180 | 71240208 | 142 | -17.36 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000147130.13 | ENST00000314425 | hsa-miR-548aa | 71240714 | 71240720 | 7mer-m8 | 71240713 | 71240737 | 140 | -11.56 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000147130.13 | ENST00000314425 | hsa-miR-548aa | 71240757 | 71240763 | 7mer-m8 | 71240756 | 71240780 | 148 | -12.54 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000147130.13 | ENST00000314425 | hsa-miR-548aa | 71240578 | 71240584 | 7mer-m8 | 71240577 | 71240604 | 151 | -15.46 |
CAediting_77128 | chr1_85133844_+ | ENSG00000147130.13 | ENST00000314425 | hsa-miR-4423-3p | 71240487 | 71240493 | 7mer-m8 | 71240486 | 71240506 | 140 | -13.3 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000147130.13 | ENST00000373998 | hsa-miR-548aa | 71240181 | 71240187 | 7mer-m8 | 71240180 | 71240208 | 142 | -17.36 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000147130.13 | ENST00000373998 | hsa-miR-548aa | 71240714 | 71240720 | 7mer-m8 | 71240713 | 71240737 | 140 | -11.56 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000147130.13 | ENST00000373998 | hsa-miR-548aa | 71240757 | 71240763 | 7mer-m8 | 71240756 | 71240780 | 148 | -12.54 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000147130.13 | ENST00000373998 | hsa-miR-548aa | 71240578 | 71240584 | 7mer-m8 | 71240577 | 71240604 | 151 | -15.46 |
CAediting_77128 | chr1_85133844_+ | ENSG00000147130.13 | ENST00000373998 | hsa-miR-4423-3p | 71240487 | 71240493 | 7mer-m8 | 71240486 | 71240506 | 140 | -13.3 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000147130.13 | ENST00000373984 | hsa-miR-548aa | 71240181 | 71240187 | 7mer-m8 | 71240180 | 71240208 | 142 | -17.36 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000147130.13 | ENST00000373984 | hsa-miR-548aa | 71240714 | 71240720 | 7mer-m8 | 71240713 | 71240737 | 140 | -11.56 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000147130.13 | ENST00000373984 | hsa-miR-548aa | 71240757 | 71240763 | 7mer-m8 | 71240756 | 71240780 | 148 | -12.54 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000147130.13 | ENST00000373984 | hsa-miR-548aa | 71240578 | 71240584 | 7mer-m8 | 71240577 | 71240604 | 151 | -15.46 |
CAediting_77128 | chr1_85133844_+ | ENSG00000147130.13 | ENST00000373984 | hsa-miR-4423-3p | 71240487 | 71240493 | 7mer-m8 | 71240486 | 71240506 | 140 | -13.3 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000147130.13 | ENST00000373988 | hsa-miR-548aa | 71240181 | 71240187 | 7mer-m8 | 71240180 | 71240208 | 142 | -17.36 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000147130.13 | ENST00000373988 | hsa-miR-548aa | 71240714 | 71240720 | 7mer-m8 | 71240713 | 71240737 | 140 | -11.56 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000147130.13 | ENST00000373988 | hsa-miR-548aa | 71240757 | 71240763 | 7mer-m8 | 71240756 | 71240780 | 148 | -12.54 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000147130.13 | ENST00000373988 | hsa-miR-548aa | 71240578 | 71240584 | 7mer-m8 | 71240577 | 71240604 | 151 | -15.46 |
CAediting_77128 | chr1_85133844_+ | ENSG00000147130.13 | ENST00000373988 | hsa-miR-4423-3p | 71240487 | 71240493 | 7mer-m8 | 71240486 | 71240506 | 140 | -13.3 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_524911 | chr7_5495852_- | ENSG00000147130.13 | ENST00000314425 | hsa-miR-589-3p | 71239744 | 71239751 | 8mer-1a | 71239744 | 71239769 | 152 | -15.22 |
CAediting_1399425 | chr20_1392958_- | ENSG00000147130.13 | ENST00000314425 | hsa-miR-6869-5p | 71240824 | 71240830 | 7mer-m8 | 71240823 | 71240844 | 142 | -15.84 |
CAediting_468389 | chr6_31355314_- | ENSG00000147130.13 | ENST00000314425 | hsa-miR-6891-5p | 71240632 | 71240638 | 7mer-m8 | 71240631 | 71240649 | 150 | -18.7 |
CAediting_524911 | chr7_5495852_- | ENSG00000147130.13 | ENST00000373998 | hsa-miR-589-3p | 71239744 | 71239751 | 8mer-1a | 71239744 | 71239769 | 152 | -15.22 |
CAediting_1399425 | chr20_1392958_- | ENSG00000147130.13 | ENST00000373998 | hsa-miR-6869-5p | 71240824 | 71240830 | 7mer-m8 | 71240823 | 71240844 | 142 | -15.84 |
CAediting_468389 | chr6_31355314_- | ENSG00000147130.13 | ENST00000373998 | hsa-miR-6891-5p | 71240632 | 71240638 | 7mer-m8 | 71240631 | 71240649 | 150 | -18.7 |
CAediting_524911 | chr7_5495852_- | ENSG00000147130.13 | ENST00000373984 | hsa-miR-589-3p | 71239744 | 71239751 | 8mer-1a | 71239744 | 71239769 | 152 | -15.22 |
CAediting_1399425 | chr20_1392958_- | ENSG00000147130.13 | ENST00000373984 | hsa-miR-6869-5p | 71240824 | 71240830 | 7mer-m8 | 71240823 | 71240844 | 142 | -15.84 |
CAediting_468389 | chr6_31355314_- | ENSG00000147130.13 | ENST00000373984 | hsa-miR-6891-5p | 71240632 | 71240638 | 7mer-m8 | 71240631 | 71240649 | 150 | -18.7 |
CAediting_524911 | chr7_5495852_- | ENSG00000147130.13 | ENST00000373988 | hsa-miR-589-3p | 71239744 | 71239751 | 8mer-1a | 71239744 | 71239769 | 152 | -15.22 |
CAediting_1399425 | chr20_1392958_- | ENSG00000147130.13 | ENST00000373988 | hsa-miR-6869-5p | 71240824 | 71240830 | 7mer-m8 | 71240823 | 71240844 | 142 | -15.84 |
CAediting_468389 | chr6_31355314_- | ENSG00000147130.13 | ENST00000373988 | hsa-miR-6891-5p | 71240632 | 71240638 | 7mer-m8 | 71240631 | 71240649 | 150 | -18.7 |
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The effects of the RNA editing to the stability of the RNA structures for ZMYM3 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for ZMYM3 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for ZMYM3 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for ZMYM3 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for ZMYM3 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ZMYM3 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
ZMYM3 | C0033578 | Prostatic Neoplasms | 3 | CTD_human |
ZMYM3 | C0376358 | Malignant neoplasm of prostate | 3 | CTD_human |
ZMYM3 | C1136249 | Mental Retardation, X-Linked | 1 | GENOMICS_ENGLAND |