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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SCAF11 (CAeditome ID:9169)

Gene summary for SCAF11

check button Gene summary
Gene informationGene symbol

SCAF11

Gene ID

9169

Gene nameSR-related CTD associated factor 11
SynonymsCASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP
Cytomap

12q12

Type of geneprotein-coding
Descriptionprotein SCAF11CTD-associated SR protein 11SC35-interacting protein 1SFRS2-interacting proteinSR-related and CTD-associated factor 11SRSF2-interacting proteinrenal carcinoma antigen NY-REN-40serine/arginine-rich splicing factor 2-interacting protein
Modification date20210518
UniProtAcc

Q99590

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
SCAF11

GO:0000245

Protein SCAF11

9447963

SCAF11

GO:0000375

Protein SCAF11

9447963

SCAF11

GO:0008380

Protein SCAF11

9447963

SCAF11

GO:0005654

Protein SCAF11

0000052

SCAF11

GO:0005730

Protein SCAF11

0000052

SCAF11

GO:0016604

Protein SCAF11

0000052


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RNA A-to-I events for SCAF11

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000139218.16

check button RNA A-to-I editing events in Cancer.
CAediting_882315(45920990, -), CAediting_882316(45920992, -), CAediting_882317(45921012, -), CAediting_882318(45921021, -), CAediting_882319(45921035, -), CAediting_882320(45921055, -), CAediting_882321(45921059, -), CAediting_882322(45921072, -), CAediting_882323(45921079, -), CAediting_882324(45921080, -), CAediting_882325(45921106, -), CAediting_882326(45921111, -), CAediting_882327(45921120, -), CAediting_882328(45921121, -), CAediting_882329(45921143, -), CAediting_882330(45921153, -), CAediting_882331(45921215, -), CAediting_882332(45921254, -), CAediting_882333(45921270, -), CAediting_882334(45923780, -), CAediting_882335(45923943, -), CAediting_882336(45924044, -), CAediting_882337(45924045, -), CAediting_882338(45924046, -), CAediting_882339(45924122, -), CAediting_882340(45925308, -), CAediting_882341(45925417, -), CAediting_882342(45936175, -), CAediting_882343(45936218, -), CAediting_882344(45936227, -), CAediting_882345(45936238, -), CAediting_882346(45936239, -), CAediting_882347(45936247, -), CAediting_882348(45936250, -), CAediting_882349(45936255, -), CAediting_882350(45936309, -), CAediting_882351(45936310, -), CAediting_882352(45936318, -), CAediting_882353(45936319, -), CAediting_882354(45936320, -), CAediting_882355(45936321, -), CAediting_882356(45936324, -), CAediting_882357(45936360, -), CAediting_882358(45936361, -), CAediting_882359(45936391, -), CAediting_882360(45936423, -), CAediting_882361(45938233, -), CAediting_882362(45938247, -), CAediting_882363(45938273, -), CAediting_882364(45938298, -), CAediting_882365(45938367, -), CAediting_882366(45938377, -), CAediting_882367(45938406, -), CAediting_882368(45938426, -), CAediting_882369(45938437, -), CAediting_882370(45938453, -), CAediting_882371(45938467, -), CAediting_882372(45939681, -), CAediting_882373(45939686, -), CAediting_882374(45940832, -), CAediting_882375(45940892, -), CAediting_882376(45940907, -), CAediting_882377(45940943, -), CAediting_882378(45940949, -), CAediting_882379(45940978, -), CAediting_882380(45940997, -), CAediting_882381(45945819, -), CAediting_882382(45947797, -), CAediting_882383(45947859, -), CAediting_882384(45953434, -), CAediting_882385(45953435, -), CAediting_882386(45953461, -), CAediting_882387(45953468, -), CAediting_882388(45953474, -), CAediting_882389(45953482, -), CAediting_882390(45953484, -), CAediting_882391(45953487, -), CAediting_882392(45953494, -), CAediting_882393(45953508, -), CAediting_882394(45953511, -), CAediting_882395(45953542, -), CAediting_882396(45953544, -), CAediting_882397(45953555, -), CAediting_882398(45954295, -), CAediting_882399(45954369, -), CAediting_882400(45954375, -), CAediting_882401(45954425, -), CAediting_882402(45954470, -), CAediting_882403(45954483, -), CAediting_882404(45954487, -), CAediting_882405(45954598, -), CAediting_882406(45954603, -), CAediting_882407(45954622, -), CAediting_882408(45954632, -), CAediting_882409(45954635, -), CAediting_882410(45954642, -), CAediting_882411(45954643, -), CAediting_882412(45954646, -), CAediting_882413(45954653, -), CAediting_882414(45954662, -), CAediting_882415(45954668, -), CAediting_882416(45954677, -), CAediting_882417(45954679, -), CAediting_882418(45954685, -), CAediting_882419(45954686, -), CAediting_882420(45954687, -), CAediting_882421(45954692, -), CAediting_882422(45954718, -), CAediting_882423(45954720, -), CAediting_882424(45954730, -), CAediting_882425(45954810, -), CAediting_882426(45954813, -), CAediting_882427(45954829, -), CAediting_882428(45954832, -), CAediting_882429(45954836, -), CAediting_882430(45954842, -), CAediting_882431(45954850, -), CAediting_882432(45954853, -), CAediting_882433(45954858, -), CAediting_882434(45954859, -), CAediting_882435(45955212, -), CAediting_882436(45955249, -), CAediting_882437(45955253, -), CAediting_882438(45955277, -), CAediting_882439(45955295, -), CAediting_882440(45955414, -), CAediting_882441(45955422, -), CAediting_882442(45955423, -), CAediting_882443(45957922, -), CAediting_882444(45957926, -), CAediting_882445(45957927, -), CAediting_882446(45957945, -), CAediting_882447(45957950, -), CAediting_882448(45957995, -), CAediting_882449(45957998, -), CAediting_882450(45958039, -), CAediting_882451(45958065, -), CAediting_882452(45959254, -), CAediting_882453(45959260, -), CAediting_882454(45959262, -), CAediting_882455(45965502, -), CAediting_882456(45965586, -), CAediting_882457(45965609, -), CAediting_882458(45965614, -), CAediting_882459(45967137, -), CAediting_882460(45967158, -), CAediting_882461(45967170, -), CAediting_882462(45967472, -), CAediting_882463(45968744, -), CAediting_882464(45969791, -), CAediting_882465(45970291, -), CAediting_882466(45979131, -), CAediting_882467(45979229, -), CAediting_882468(45979245, -), CAediting_882469(45980748, -), CAediting_882470(45980749, -), CAediting_882471(45980763, -), CAediting_882472(45980764, -), CAediting_882473(45980771, -), CAediting_882474(45980780, -), CAediting_882475(45980786, -), CAediting_882476(45980787, -), CAediting_882477(45980788, -), CAediting_882478(45981679, -), CAediting_882479(45981695, -), CAediting_882480(45981743, -), CAediting_882481(45982628, -), CAediting_882482(45983567, -), CAediting_882483(45983568, -), CAediting_882484(45983613, -), CAediting_882485(45983614, -), CAediting_882486(45983618, -), CAediting_882487(45984791, -), CAediting_882488(45984832, -), CAediting_882489(45984849, -), CAediting_882490(45984855, -), CAediting_882491(45984859, -),

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RNA editing positional annotations for SCAF11 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_882315chr12_45920990_-ncRNA_intronic
CAediting_882316chr12_45920992_-ncRNA_intronic
CAediting_882317chr12_45921012_-ncRNA_intronic
CAediting_882318chr12_45921021_-ncRNA_intronic
CAediting_882319chr12_45921035_-ncRNA_intronic
CAediting_882320chr12_45921055_-ncRNA_intronic
CAediting_882321chr12_45921059_-ncRNA_intronic
CAediting_882322chr12_45921072_-ncRNA_intronic
CAediting_882323chr12_45921079_-ncRNA_intronic
CAediting_882324chr12_45921080_-ncRNA_intronic
CAediting_882325chr12_45921106_-ncRNA_intronic
CAediting_882326chr12_45921111_-ncRNA_intronic
CAediting_882327chr12_45921120_-ncRNA_intronic
CAediting_882328chr12_45921121_-ncRNA_intronic
CAediting_882329chr12_45921143_-ncRNA_intronic
CAediting_882330chr12_45921153_-ncRNA_intronic
CAediting_882331chr12_45921215_-ncRNA_intronic
CAediting_882332chr12_45921254_-ncRNA_intronic
CAediting_882333chr12_45921270_-ncRNA_intronic
CAediting_882334chr12_45923780_-ncRNA_intronic
CAediting_882335chr12_45923943_-ncRNA_intronic
CAediting_882336chr12_45924044_-ncRNA_intronic
CAediting_882337chr12_45924045_-ncRNA_intronic
CAediting_882338chr12_45924046_-ncRNA_intronic
CAediting_882339chr12_45924122_-ncRNA_intronic
CAediting_882340chr12_45925308_-ncRNA_intronic
CAediting_882341chr12_45925417_-ncRNA_intronic
CAediting_882342chr12_45936175_-intronic
CAediting_882343chr12_45936218_-intronic
CAediting_882344chr12_45936227_-intronic
CAediting_882345chr12_45936238_-intronic
CAediting_882346chr12_45936239_-intronic
CAediting_882347chr12_45936247_-intronic
CAediting_882348chr12_45936250_-intronic
CAediting_882349chr12_45936255_-intronic
CAediting_882350chr12_45936309_-intronic
CAediting_882351chr12_45936310_-intronic
CAediting_882352chr12_45936318_-intronic
CAediting_882353chr12_45936319_-intronic
CAediting_882354chr12_45936320_-intronic
CAediting_882355chr12_45936321_-intronic
CAediting_882356chr12_45936324_-intronic
CAediting_882357chr12_45936360_-intronic
CAediting_882358chr12_45936361_-intronic
CAediting_882359chr12_45936391_-intronic
CAediting_882360chr12_45936423_-intronic
CAediting_882361chr12_45938233_-intronic
CAediting_882362chr12_45938247_-intronic
CAediting_882363chr12_45938273_-intronic
CAediting_882364chr12_45938298_-intronic
CAediting_882365chr12_45938367_-intronic
CAediting_882366chr12_45938377_-intronic
CAediting_882367chr12_45938406_-intronic
CAediting_882368chr12_45938426_-intronic
CAediting_882369chr12_45938437_-intronic
CAediting_882370chr12_45938453_-intronic
CAediting_882371chr12_45938467_-intronic
CAediting_882372chr12_45939681_-intronic
CAediting_882373chr12_45939686_-intronic
CAediting_882374chr12_45940832_-intronic
CAediting_882375chr12_45940892_-intronic
CAediting_882376chr12_45940907_-intronic
CAediting_882377chr12_45940943_-intronic
CAediting_882378chr12_45940949_-intronic
CAediting_882379chr12_45940978_-intronic
CAediting_882380chr12_45940997_-intronic
CAediting_882381chr12_45945819_-intronic
CAediting_882382chr12_45947797_-intronic
CAediting_882383chr12_45947859_-intronic
CAediting_882384chr12_45953434_-intronic
CAediting_882385chr12_45953435_-intronic
CAediting_882386chr12_45953461_-intronic
CAediting_882387chr12_45953468_-intronic
CAediting_882388chr12_45953474_-intronic
CAediting_882389chr12_45953482_-intronic
CAediting_882390chr12_45953484_-intronic
CAediting_882391chr12_45953487_-intronic
CAediting_882392chr12_45953494_-intronic
CAediting_882393chr12_45953508_-intronic
CAediting_882394chr12_45953511_-intronic
CAediting_882395chr12_45953542_-intronic
CAediting_882396chr12_45953544_-intronic
CAediting_882397chr12_45953555_-intronic
CAediting_882398chr12_45954295_-intronic
CAediting_882399chr12_45954369_-intronic
CAediting_882400chr12_45954375_-intronic
CAediting_882401chr12_45954425_-intronic
CAediting_882402chr12_45954470_-intronic
CAediting_882403chr12_45954483_-intronic
CAediting_882404chr12_45954487_-intronic
CAediting_882405chr12_45954598_-intronic
CAediting_882406chr12_45954603_-intronic
CAediting_882407chr12_45954622_-intronic
CAediting_882408chr12_45954632_-intronic
CAediting_882409chr12_45954635_-intronic
CAediting_882410chr12_45954642_-intronic
CAediting_882411chr12_45954643_-intronic
CAediting_882412chr12_45954646_-intronic
CAediting_882413chr12_45954653_-intronic
CAediting_882414chr12_45954662_-intronic
CAediting_882415chr12_45954668_-intronic
CAediting_882416chr12_45954677_-intronic
CAediting_882417chr12_45954679_-intronic
CAediting_882418chr12_45954685_-intronic
CAediting_882419chr12_45954686_-intronic
CAediting_882420chr12_45954687_-intronic
CAediting_882421chr12_45954692_-intronic
CAediting_882422chr12_45954718_-intronic
CAediting_882423chr12_45954720_-intronic
CAediting_882424chr12_45954730_-intronic
CAediting_882425chr12_45954810_-UTR3
CAediting_882426chr12_45954813_-UTR3
CAediting_882427chr12_45954829_-UTR3
CAediting_882428chr12_45954832_-UTR3
CAediting_882429chr12_45954836_-UTR3
CAediting_882430chr12_45954842_-UTR3
CAediting_882431chr12_45954850_-UTR3
CAediting_882432chr12_45954853_-UTR3
CAediting_882433chr12_45954858_-UTR3
CAediting_882434chr12_45954859_-UTR3
CAediting_882435chr12_45955212_-UTR3
CAediting_882436chr12_45955249_-UTR3
CAediting_882437chr12_45955253_-UTR3
CAediting_882438chr12_45955277_-UTR3
CAediting_882439chr12_45955295_-UTR3
CAediting_882440chr12_45955414_-UTR3
CAediting_882441chr12_45955422_-UTR3
CAediting_882442chr12_45955423_-UTR3
CAediting_882443chr12_45957922_-intronic
CAediting_882444chr12_45957926_-intronic
CAediting_882445chr12_45957927_-intronic
CAediting_882446chr12_45957945_-intronic
CAediting_882447chr12_45957950_-intronic
CAediting_882448chr12_45957995_-intronic
CAediting_882449chr12_45957998_-intronic
CAediting_882450chr12_45958039_-intronic
CAediting_882451chr12_45958065_-intronic
CAediting_882452chr12_45959254_-intronic
CAediting_882453chr12_45959260_-intronic
CAediting_882454chr12_45959262_-intronic
CAediting_882455chr12_45965502_-ncRNA_intronic
CAediting_882456chr12_45965586_-ncRNA_intronic
CAediting_882457chr12_45965609_-ncRNA_intronic
CAediting_882458chr12_45965614_-ncRNA_intronic
CAediting_882459chr12_45967137_-ncRNA_intronic
CAediting_882460chr12_45967158_-ncRNA_intronic
CAediting_882461chr12_45967170_-ncRNA_intronic
CAediting_882462chr12_45967472_-ncRNA_intronic
CAediting_882463chr12_45968744_-ncRNA_intronic
CAediting_882464chr12_45969791_-ncRNA_intronic
CAediting_882465chr12_45970291_-ncRNA_intronic
CAediting_882466chr12_45979131_-ncRNA_intronic
CAediting_882467chr12_45979229_-ncRNA_intronic
CAediting_882468chr12_45979245_-ncRNA_intronic
CAediting_882469chr12_45980748_-ncRNA_intronic
CAediting_882470chr12_45980749_-ncRNA_intronic
CAediting_882471chr12_45980763_-ncRNA_intronic
CAediting_882472chr12_45980764_-ncRNA_intronic
CAediting_882473chr12_45980771_-ncRNA_intronic
CAediting_882474chr12_45980780_-ncRNA_intronic
CAediting_882475chr12_45980786_-ncRNA_intronic
CAediting_882476chr12_45980787_-ncRNA_intronic
CAediting_882477chr12_45980788_-ncRNA_intronic
CAediting_882478chr12_45981679_-ncRNA_intronic
CAediting_882479chr12_45981695_-ncRNA_intronic
CAediting_882480chr12_45981743_-ncRNA_intronic
CAediting_882481chr12_45982628_-ncRNA_intronic
CAediting_882482chr12_45983567_-ncRNA_intronic
CAediting_882483chr12_45983568_-ncRNA_intronic
CAediting_882484chr12_45983613_-ncRNA_intronic
CAediting_882485chr12_45983614_-ncRNA_intronic
CAediting_882486chr12_45983618_-ncRNA_intronic
CAediting_882487chr12_45984791_-ncRNA_intronic
CAediting_882488chr12_45984832_-ncRNA_intronic
CAediting_882489chr12_45984849_-ncRNA_intronic
CAediting_882490chr12_45984855_-ncRNA_intronic
CAediting_882491chr12_45984859_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_882315chr12_45920990_-SINEAluAluSq2
CAediting_882316chr12_45920992_-SINEAluAluSq2
CAediting_882317chr12_45921012_-SINEAluAluSq2
CAediting_882318chr12_45921021_-SINEAluAluSq2
CAediting_882319chr12_45921035_-SINEAluAluSq2
CAediting_882320chr12_45921055_-SINEAluAluSq2
CAediting_882321chr12_45921059_-SINEAluAluSq2
CAediting_882322chr12_45921072_-SINEAluAluSq2
CAediting_882323chr12_45921079_-SINEAluAluSq2
CAediting_882324chr12_45921080_-SINEAluAluSq2
CAediting_882325chr12_45921106_-SINEAluAluSq2
CAediting_882326chr12_45921111_-SINEAluAluSq2
CAediting_882327chr12_45921120_-SINEAluAluSq2
CAediting_882328chr12_45921121_-SINEAluAluSq2
CAediting_882329chr12_45921143_-SINEAluAluSq2
CAediting_882330chr12_45921153_-SINEAluAluSq2
CAediting_882331chr12_45921215_-SINEAluAluSq2
CAediting_882332chr12_45921254_-SINEAluAluSq2
CAediting_882333chr12_45921270_-SINEAluAluSq2
CAediting_882334chr12_45923780_-SINEAluAluSz6
CAediting_882335chr12_45923943_-SINEAluAluSg
CAediting_882336chr12_45924044_-SINEAluAluSg
CAediting_882337chr12_45924045_-SINEAluAluSg
CAediting_882338chr12_45924046_-SINEAluAluSg
CAediting_882339chr12_45924122_-SINEAluAluSg
CAediting_882340chr12_45925308_-SINEAluAluSq2
CAediting_882341chr12_45925417_-SINEAluAluSq2
CAediting_882342chr12_45936175_-SINEAluAluSx
CAediting_882343chr12_45936218_-SINEAluAluSx
CAediting_882344chr12_45936227_-SINEAluAluSx
CAediting_882345chr12_45936238_-SINEAluAluSx
CAediting_882346chr12_45936239_-SINEAluAluSx
CAediting_882347chr12_45936247_-SINEAluAluSx
CAediting_882348chr12_45936250_-SINEAluAluSx
CAediting_882349chr12_45936255_-SINEAluAluSx
CAediting_882350chr12_45936309_-SINEAluAluSx
CAediting_882351chr12_45936310_-SINEAluAluSx
CAediting_882352chr12_45936318_-SINEAluAluSx
CAediting_882353chr12_45936319_-SINEAluAluSx
CAediting_882354chr12_45936320_-SINEAluAluSx
CAediting_882355chr12_45936321_-SINEAluAluSx
CAediting_882356chr12_45936324_-SINEAluAluSx
CAediting_882357chr12_45936360_-SINEAluAluSx
CAediting_882358chr12_45936361_-SINEAluAluSx
CAediting_882359chr12_45936391_-SINEAluAluSx
CAediting_882360chr12_45936423_-SINEAluAluSx
CAediting_882361chr12_45938233_-SINEAluAluSq2
CAediting_882362chr12_45938247_-SINEAluAluSq2
CAediting_882363chr12_45938273_-SINEAluAluSq2
CAediting_882364chr12_45938298_-SINEAluAluSq2
CAediting_882365chr12_45938367_-SINEAluAluSq2
CAediting_882366chr12_45938377_-SINEAluAluSq2
CAediting_882367chr12_45938406_-SINEAluAluSq2
CAediting_882368chr12_45938426_-SINEAluAluSq2
CAediting_882369chr12_45938437_-SINEAluAluSq2
CAediting_882370chr12_45938453_-SINEAluAluSq2
CAediting_882371chr12_45938467_-SINEAluAluSq2
CAediting_882372chr12_45939681_-SINEAluAluSq2
CAediting_882373chr12_45939686_-SINEAluAluSq2
CAediting_882374chr12_45940832_-SINEAluAluJb
CAediting_882375chr12_45940892_-SINEAluAluJb
CAediting_882376chr12_45940907_-SINEAluAluJb
CAediting_882377chr12_45940943_-SINEAluAluJb
CAediting_882378chr12_45940949_-SINEAluAluJb
CAediting_882379chr12_45940978_-SINEAluAluJb
CAediting_882380chr12_45940997_-SINEAluAluJb
CAediting_882381chr12_45945819_-SINEAluAluJb
CAediting_882382chr12_45947797_-SINEAluAluJo
CAediting_882383chr12_45947859_-SINEAluAluJo
CAediting_882384chr12_45953434_-SINEAluAluJo
CAediting_882385chr12_45953435_-SINEAluAluJo
CAediting_882386chr12_45953461_-SINEAluAluJo
CAediting_882387chr12_45953468_-SINEAluAluJo
CAediting_882388chr12_45953474_-SINEAluAluJo
CAediting_882389chr12_45953482_-SINEAluAluJo
CAediting_882390chr12_45953484_-SINEAluAluJo
CAediting_882391chr12_45953487_-SINEAluAluJo
CAediting_882392chr12_45953494_-SINEAluAluJo
CAediting_882393chr12_45953508_-SINEAluAluJo
CAediting_882394chr12_45953511_-SINEAluAluJo
CAediting_882395chr12_45953542_-SINEAluAluJo
CAediting_882398chr12_45954295_-SINEAluAluJb
CAediting_882399chr12_45954369_-SINEAluAluJb
CAediting_882400chr12_45954375_-SINEAluAluJb
CAediting_882401chr12_45954425_-SINEAluAluJb
CAediting_882402chr12_45954470_-SINEAluAluJb
CAediting_882403chr12_45954483_-SINEAluAluJb
CAediting_882404chr12_45954487_-SINEAluAluJb
CAediting_882405chr12_45954598_-SINEAluAluJo
CAediting_882406chr12_45954603_-SINEAluAluJo
CAediting_882407chr12_45954622_-SINEAluAluJo
CAediting_882408chr12_45954632_-SINEAluAluJo
CAediting_882409chr12_45954635_-SINEAluAluJo
CAediting_882410chr12_45954642_-SINEAluAluJo
CAediting_882411chr12_45954643_-SINEAluAluJo
CAediting_882412chr12_45954646_-SINEAluAluJo
CAediting_882413chr12_45954653_-SINEAluAluJo
CAediting_882414chr12_45954662_-SINEAluAluJo
CAediting_882415chr12_45954668_-SINEAluAluJo
CAediting_882416chr12_45954677_-SINEAluAluJo
CAediting_882417chr12_45954679_-SINEAluAluJo
CAediting_882418chr12_45954685_-SINEAluAluJo
CAediting_882419chr12_45954686_-SINEAluAluJo
CAediting_882420chr12_45954687_-SINEAluAluJo
CAediting_882421chr12_45954692_-SINEAluAluJo
CAediting_882422chr12_45954718_-SINEAluAluJo
CAediting_882423chr12_45954720_-SINEAluAluJo
CAediting_882424chr12_45954730_-SINEAluAluJo
CAediting_882425chr12_45954810_-SINEAluAluJo
CAediting_882426chr12_45954813_-SINEAluAluJo
CAediting_882427chr12_45954829_-SINEAluAluJo
CAediting_882428chr12_45954832_-SINEAluAluJo
CAediting_882429chr12_45954836_-SINEAluAluJo
CAediting_882430chr12_45954842_-SINEAluAluJo
CAediting_882431chr12_45954850_-SINEAluAluJo
CAediting_882432chr12_45954853_-SINEAluAluJo
CAediting_882433chr12_45954858_-SINEAluAluJo
CAediting_882434chr12_45954859_-SINEAluAluJo
CAediting_882435chr12_45955212_-SINEAluAluJb
CAediting_882436chr12_45955249_-SINEAluAluJb
CAediting_882437chr12_45955253_-SINEAluAluJb
CAediting_882438chr12_45955277_-SINEAluAluJb
CAediting_882439chr12_45955295_-SINEAluAluJb
CAediting_882440chr12_45955414_-SINEAluAluJb
CAediting_882441chr12_45955422_-SINEAluAluJb
CAediting_882442chr12_45955423_-SINEAluAluJb
CAediting_882443chr12_45957922_-SINEAluAluJb
CAediting_882444chr12_45957926_-SINEAluAluJb
CAediting_882445chr12_45957927_-SINEAluAluJb
CAediting_882446chr12_45957945_-SINEAluAluJb
CAediting_882447chr12_45957950_-SINEAluAluJb
CAediting_882448chr12_45957995_-SINEAluAluJb
CAediting_882449chr12_45957998_-SINEAluAluJb
CAediting_882450chr12_45958039_-SINEAluAluJb
CAediting_882451chr12_45958065_-SINEAluAluJb
CAediting_882452chr12_45959254_-SINEAluAluSz6
CAediting_882453chr12_45959260_-SINEAluAluSz6
CAediting_882454chr12_45959262_-SINEAluAluSz6
CAediting_882455chr12_45965502_-SINEAluFLAM_C
CAediting_882456chr12_45965586_-SINEAluFLAM_C
CAediting_882457chr12_45965609_-SINEAluFLAM_C
CAediting_882459chr12_45967137_-SINEAluFLAM_A
CAediting_882460chr12_45967158_-SINEAluFLAM_A
CAediting_882461chr12_45967170_-SINEAluFLAM_A
CAediting_882462chr12_45967472_-SINEAluAluSx1
CAediting_882463chr12_45968744_-SINEAluAluSz
CAediting_882464chr12_45969791_-SINEAluAluJr
CAediting_882465chr12_45970291_-SINEAluAluJr
CAediting_882466chr12_45979131_-LTRERVL-MaLRMLT1A1
CAediting_882467chr12_45979229_-LTRERVL-MaLRMLT1A1
CAediting_882468chr12_45979245_-LTRERVL-MaLRMLT1A1
CAediting_882478chr12_45981679_-SINEAluAluJr4
CAediting_882479chr12_45981695_-SINEAluAluJr4
CAediting_882480chr12_45981743_-SINEAluAluJr4
CAediting_882481chr12_45982628_-SINEAluAluSz
CAediting_882487chr12_45984791_-SINEAluAluSz6
CAediting_882488chr12_45984832_-SINEAluAluSz6
CAediting_882489chr12_45984849_-SINEAluAluSz6
CAediting_882490chr12_45984855_-SINEAluAluSz6
CAediting_882491chr12_45984859_-SINEAluAluSz6

Top

RNA A-to-I editing events in the alternative splicing sites for SCAF11

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000139218.16.SCAF11.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000139218.16.SCAF11.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for SCAF11

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for SCAF11

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for SCAF11

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_882437chr12_45955253_-ENSG00000139218.16ENST00000395454hsa-miR-64545955248459552547mer-m84595524745955265140.00-15.50
CAediting_882320chr12_45921055_-ENSG00000139218.16ENST00000369367hsa-miR-324-3p45921055459210617mer-m84592105445921079141.00-31.22
CAediting_882320chr12_45921055_-ENSG00000139218.16ENST00000369367hsa-miR-607545921050459210578mer-1a4592105045921068146.00-20.11
CAediting_882321chr12_45921059_-ENSG00000139218.16ENST00000369367hsa-miR-6784-3p45921054459210596mer4592105345921075143.00-29.62
CAediting_882323chr12_45921079_-ENSG00000139218.16ENST00000369367hsa-miR-443745921076459210827mer-m84592107545921095141.00-16.86
CAediting_882323chr12_45921079_-ENSG00000139218.16ENST00000369367hsa-miR-7158-5p45921078459210836mer4592107745921100144.00-26.07
CAediting_882326chr12_45921111_-ENSG00000139218.16ENST00000369367hsa-miR-1207-3p45921111459211177mer-m84592111045921127140.00-13.17
CAediting_882330chr12_45921153_-ENSG00000139218.16ENST00000369367hsa-miR-4742-3p45921152459211598mer-1a4592115245921174142.00-9.18
CAediting_882332chr12_45921254_-ENSG00000139218.16ENST00000369367hsa-miR-805245921249459212557mer-1a4592124945921267140.00-24.15
CAediting_882333chr12_45921270_-ENSG00000139218.16ENST00000369367hsa-miR-6872-3p45921270459212767mer-m84592126945921287149.00-20.41
CAediting_882427chr12_45954829_-ENSG00000139218.16ENST00000395454hsa-miR-3162-3p45954829459548357mer-m84595482845954847157.00-26.45
CAediting_882428chr12_45954832_-ENSG00000139218.16ENST00000395454hsa-miR-1224-3p45954829459548368mer-1a4595482945954848156.00-26.75
CAediting_882428chr12_45954832_-ENSG00000139218.16ENST00000395454hsa-miR-1260a45954829459548357mer-m84595482845954845164.00-28.81
CAediting_882428chr12_45954832_-ENSG00000139218.16ENST00000395454hsa-miR-1260b45954829459548357mer-m84595482845954846161.00-23.52
CAediting_882429chr12_45954836_-ENSG00000139218.16ENST00000395454hsa-miR-6849-3p45954836459548427mer-m84595483545954856140.00-17.43
CAediting_882430chr12_45954842_-ENSG00000139218.16ENST00000395454hsa-miR-361-3p45954841459548466mer4595484045954860141.00-22.77
CAediting_882430chr12_45954842_-ENSG00000139218.16ENST00000395454hsa-miR-394345954838459548447mer-m84595483745954857142.00-21.72
CAediting_882433chr12_45954858_-ENSG00000139218.16ENST00000395454hsa-miR-319945954853459548597mer-1a4595485345954875145.00-22.89
CAediting_882433chr12_45954858_-ENSG00000139218.16ENST00000395454hsa-miR-319945954853459548597mer-1a4595485345954875145.00-22.89
CAediting_882433chr12_45954858_-ENSG00000139218.16ENST00000395454hsa-miR-429845954852459548587mer-1a4595485245954873148.00-31.26
CAediting_882433chr12_45954858_-ENSG00000139218.16ENST00000395454hsa-miR-805245954853459548597mer-1a4595485345954877146.00-24.41
CAediting_882434chr12_45954859_-ENSG00000139218.16ENST00000395454hsa-miR-513a-5p45954858459548647mer-m84595485745954873154.00-22.21
CAediting_882434chr12_45954859_-ENSG00000139218.16ENST00000395454hsa-miR-513a-5p45954858459548647mer-m84595485745954873154.00-22.21
CAediting_882434chr12_45954859_-ENSG00000139218.16ENST00000395454hsa-miR-63845954853459548597mer-1a4595485345954876149.00-28.95
CAediting_882436chr12_45955249_-ENSG00000139218.16ENST00000395454hsa-miR-4726-3p45955246459552538mer-1a4595524645955269158.00-26.78
CAediting_882438chr12_45955277_-ENSG00000139218.16ENST00000395454hsa-miR-150-5p45955276459552838mer-1a4595527645955297140.00-16.12
CAediting_882438chr12_45955277_-ENSG00000139218.16ENST00000395454hsa-miR-4713-5p45955276459552827mer-m84595527545955296140.00-12.28
CAediting_882439chr12_45955295_-ENSG00000139218.16ENST00000395454hsa-miR-140-3p45955293459552997mer-m84595529245955312163.00-23.58
CAediting_882442chr12_45955423_-ENSG00000139218.16ENST00000395454hsa-miR-513b-5p45955422459554287mer-m84595542145955442151.00-17.43
CAediting_882442chr12_45955423_-ENSG00000139218.16ENST00000395454hsa-miR-63845955417459554237mer-1a4595541745955441155.00-33.04
CAediting_882322chr12_45921072_-ENSG00000139218.16ENST00000369367hsa-miR-431345921069459210746mer4592106845921087140.00-22.25
CAediting_882322chr12_45921072_-ENSG00000139218.16ENST00000369367hsa-miR-5587-3p45921072459210787mer-m84592107145921092150.00-22.93
CAediting_882322chr12_45921072_-ENSG00000139218.16ENST00000369367hsa-miR-6840-5p45921071459210777mer-m84592107045921100149.00-32.00
CAediting_882325chr12_45921106_-ENSG00000139218.16ENST00000369367hsa-miR-6778-3p45921101459211077mer-m84592110045921118142.00-16.92
CAediting_882325chr12_45921106_-ENSG00000139218.16ENST00000369367hsa-miR-6829-3p45921101459211066mer4592110045921119143.00-21.53
CAediting_882328chr12_45921121_-ENSG00000139218.16ENST00000369367hsa-miR-513a-5p45921120459211267mer-m84592111945921136140.00-14.76
CAediting_882328chr12_45921121_-ENSG00000139218.16ENST00000369367hsa-miR-513a-5p45921120459211267mer-m84592111945921136140.00-14.76
CAediting_882328chr12_45921121_-ENSG00000139218.16ENST00000369367hsa-miR-63845921115459211217mer-1a4592111545921139151.00-32.44
CAediting_882331chr12_45921215_-ENSG00000139218.16ENST00000369367hsa-miR-4726-3p45921214459212207mer-m84592121345921240147.00-30.06
CAediting_882425chr12_45954810_-ENSG00000139218.16ENST00000395454hsa-miR-146b-3p45954810459548167mer-m84595480945954828148.00-21.84

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_882332chr12_45921254_-ENSG00000139218.16ENST00000369367hsa-miR-10399-5p45921253459212597mer-m84592125245921273144-10.64
CAediting_882327chr12_45921120_-ENSG00000139218.16ENST00000369367hsa-miR-10399-5p45921119459211257mer-m84592111845921137141-11.84
CAediting_882328chr12_45921121_-ENSG00000139218.16ENST00000369367hsa-miR-10399-5p45921119459211257mer-m84592111845921137141-11.84
CAediting_882319chr12_45921035_-ENSG00000139218.16ENST00000369367hsa-miR-106a-3p45921035459210417mer-m84592103445921056144-10.52
CAediting_882322chr12_45921072_-ENSG00000139218.16ENST00000369367hsa-miR-128145921068459210747mer-m84592106745921083141-16.88
CAediting_882319chr12_45921035_-ENSG00000139218.16ENST00000369367hsa-miR-130a-3p45921033459210397mer-m84592103245921053153-14.73
CAediting_882319chr12_45921035_-ENSG00000139218.16ENST00000369367hsa-miR-130b-3p45921033459210397mer-m84592103245921051153-14.99
CAediting_882329chr12_45921143_-ENSG00000139218.16ENST00000369367hsa-miR-3064-5p45921142459211476mer4592114145921162140-17.25
CAediting_882319chr12_45921035_-ENSG00000139218.16ENST00000369367hsa-miR-366645921033459210397mer-m84592103245921052145-13.11
CAediting_882318chr12_45921021_-ENSG00000139218.16ENST00000369367hsa-miR-367-5p45921017459210237mer-m84592101645921037143-12.08
CAediting_882320chr12_45921055_-ENSG00000139218.16ENST00000369367hsa-miR-428445921052459210587mer-m84592105145921070151-19.98
CAediting_882319chr12_45921035_-ENSG00000139218.16ENST00000369367hsa-miR-429545921033459210397mer-m84592103245921049150-12.01
CAediting_882319chr12_45921035_-ENSG00000139218.16ENST00000369367hsa-miR-454-3p45921033459210397mer-m84592103245921054145-12.39
CAediting_882329chr12_45921143_-ENSG00000139218.16ENST00000369367hsa-miR-479445921142459211487mer-m84592114145921162140-12.3
CAediting_882332chr12_45921254_-ENSG00000139218.16ENST00000369367hsa-miR-5089-5p45921249459212557mer-m84592124845921270148-14.13
CAediting_882327chr12_45921120_-ENSG00000139218.16ENST00000369367hsa-miR-5089-5p45921115459211217mer-m84592111445921134144-13.27
CAediting_882332chr12_45921254_-ENSG00000139218.16ENST00000369367hsa-miR-6504-3p45921253459212597mer-m84592125245921273152-14.65
CAediting_882327chr12_45921120_-ENSG00000139218.16ENST00000369367hsa-miR-6504-3p45921119459211257mer-m84592111845921136144-11.8
CAediting_882328chr12_45921121_-ENSG00000139218.16ENST00000369367hsa-miR-6504-3p45921119459211257mer-m84592111845921136144-11.8
CAediting_882329chr12_45921143_-ENSG00000139218.16ENST00000369367hsa-miR-664a-5p45921142459211487mer-m84592114145921164141-13.02
CAediting_882317chr12_45921012_-ENSG00000139218.16ENST00000369367hsa-miR-6772-3p45921011459210188mer-1a4592101145921028150-24.99
CAediting_882322chr12_45921072_-ENSG00000139218.16ENST00000369367hsa-miR-6778-3p45921069459210757mer-m84592106845921086148-19.08
CAediting_882331chr12_45921215_-ENSG00000139218.16ENST00000369367hsa-miR-6790-3p45921210459212167mer-1a4592121045921231142-24
CAediting_882325chr12_45921106_-ENSG00000139218.16ENST00000369367hsa-miR-6814-3p45921104459211118mer-1a4592110445921125140-13.72
CAediting_882325chr12_45921106_-ENSG00000139218.16ENST00000369367hsa-miR-6872-5p45921104459211118mer-1a4592110445921122147-16.48
CAediting_882317chr12_45921012_-ENSG00000139218.16ENST00000369367hsa-miR-6885-3p45921010459210156mer4592100945921028144-18.46
CAediting_882328chr12_45921121_-ENSG00000139218.16ENST00000369367hsa-miR-7151-3p45921120459211278mer-1a4592112045921140140-13.39
CAediting_882318chr12_45921021_-ENSG00000139218.16ENST00000369367hsa-miR-744-3p45921018459210247mer-m84592101745921038140-14.79
CAediting_882433chr12_45954858_-ENSG00000139218.16ENST00000395454hsa-miR-10399-5p45954857459548637mer-m84595485645954876141-11.22
CAediting_882434chr12_45954859_-ENSG00000139218.16ENST00000395454hsa-miR-10399-5p45954857459548637mer-m84595485645954876141-11.22
CAediting_882435chr12_45955212_-ENSG00000139218.16ENST00000395454hsa-miR-143-5p45955211459552166mer4595521045955229145-25.1
CAediting_882430chr12_45954842_-ENSG00000139218.16ENST00000395454hsa-miR-150-5p45954841459548477mer-m84595484045954861140-15.81
CAediting_882426chr12_45954813_-ENSG00000139218.16ENST00000395454hsa-miR-1914-5p45954810459548178mer-1a4595481045954832155-19.42
CAediting_882426chr12_45954813_-ENSG00000139218.16ENST00000395454hsa-miR-218-5p45954813459548186mer4595481245954832141-16.94
CAediting_882426chr12_45954813_-ENSG00000139218.16ENST00000395454hsa-miR-218-5p45954813459548186mer4595481245954832141-16.94
CAediting_882435chr12_45955212_-ENSG00000139218.16ENST00000395454hsa-miR-3944-5p45955211459552177mer-m84595521045955229146-19.8
CAediting_882438chr12_45955277_-ENSG00000139218.16ENST00000395454hsa-miR-432845955272459552787mer-1a4595527245955288143-17.5
CAediting_882435chr12_45955212_-ENSG00000139218.16ENST00000395454hsa-miR-4671-3p45955209459552157mer-m84595520845955228145-13.48
CAediting_882425chr12_45954810_-ENSG00000139218.16ENST00000395454hsa-miR-4680-5p45954805459548117mer-1a4595480545954825141-20.71
CAediting_882428chr12_45954832_-ENSG00000139218.16ENST00000395454hsa-miR-4777-3p45954832459548387mer-m84595483145954856151-17.74
CAediting_882429chr12_45954836_-ENSG00000139218.16ENST00000395454hsa-miR-4777-3p45954832459548387mer-m84595483145954856151-17.74
CAediting_882437chr12_45955253_-ENSG00000139218.16ENST00000395454hsa-miR-498-5p45955253459552597mer-m84595525245955274149-15.06
CAediting_882441chr12_45955422_-ENSG00000139218.16ENST00000395454hsa-miR-5089-5p45955416459554238mer-1a4595541645955438148-15.12
CAediting_882431chr12_45954850_-ENSG00000139218.16ENST00000395454hsa-miR-520g-3p45954845459548517mer-m84595484445954866151-10.63
CAediting_882440chr12_45955414_-ENSG00000139218.16ENST00000395454hsa-miR-520g-3p45955409459554157mer-m84595540845955430147-12.15
CAediting_882431chr12_45954850_-ENSG00000139218.16ENST00000395454hsa-miR-520h45954845459548517mer-m84595484445954864146-10.35
CAediting_882440chr12_45955414_-ENSG00000139218.16ENST00000395454hsa-miR-520h45955409459554157mer-m84595540845955428146-9.24
CAediting_882436chr12_45955249_-ENSG00000139218.16ENST00000395454hsa-miR-5571-3p45955246459552527mer-m84595524545955263140-13.2
CAediting_882432chr12_45954853_-ENSG00000139218.16ENST00000395454hsa-miR-6513-5p45954852459548587mer-m84595485145954872147-14.18
CAediting_882436chr12_45955249_-ENSG00000139218.16ENST00000395454hsa-miR-660-3p45955244459552496mer4595524345955264146-19.23
CAediting_882426chr12_45954813_-ENSG00000139218.16ENST00000395454hsa-miR-6737-3p45954812459548187mer-m84595481145954838149-26.76
CAediting_882430chr12_45954842_-ENSG00000139218.16ENST00000395454hsa-miR-6778-3p45954839459548457mer-m84595483845954858143-14.47
CAediting_882439chr12_45955295_-ENSG00000139218.16ENST00000395454hsa-miR-7151-3p45955295459553017mer-m84595529445955314142-18.13
CAediting_882426chr12_45954813_-ENSG00000139218.16ENST00000395454hsa-miR-7157-3p45954812459548187mer-m84595481145954830146-17.67

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000139218.16ENST00000395454hsa-miR-624-3p45954772459547787mer-m84595477145954791156-14.08
CAediting_980496chr14_31014685_-ENSG00000139218.16ENST00000395454hsa-miR-624-3p45955181459551877mer-m84595518045955200145-16.59
CAediting_1160181chr17_7017644_-ENSG00000139218.16ENST00000369367hsa-miR-195-3p45919973459199808mer-1a4591997345919994148-9.62
CAediting_1160181chr17_7017644_-ENSG00000139218.16ENST00000369367hsa-miR-195-3p45921457459214648mer-1a4592145745921478142-8.96
CAediting_86358chr1_109598906_+ENSG00000139218.16ENST00000369367hsa-miR-197-5p45921848459218547mer-m84592184745921869165-33.34
CAediting_1160181chr17_7017644_-ENSG00000139218.16ENST00000465950hsa-miR-195-3p45921457459214648mer-1a4592145745921478142-8.96
CAediting_86358chr1_109598906_+ENSG00000139218.16ENST00000465950hsa-miR-197-5p45921848459218547mer-m84592184745921869165-33.34
CAediting_524911chr7_5495852_-ENSG00000139218.16ENST00000395454hsa-miR-589-3p45955918459559247mer-m84595591745955940152-15.1
CAediting_1229414chr17_67471546_+ENSG00000139218.16ENST00000395453hsa-miR-548aa45960621459606277mer-m84596062045960644154-13.76

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_573001chr7_92204086_-ENSG00000139218.16ENST00000369367hsa-miR-1285-5p45920400459204078mer-1a4592040045920420145-12.32
CAediting_846604chr11_93733708_-ENSG00000139218.16ENST00000369367hsa-miR-1304-3p45920402459204098mer-1a4592040245920423147-16.85
CAediting_393chr1_1167164_+ENSG00000139218.16ENST00000369367hsa-miR-200b-3p45920053459200597mer-1a4592004245920061141-10.31
CAediting_1306323chr19_13836462_-ENSG00000139218.16ENST00000369367hsa-miR-27a-3p45921958459219647mer-m84592195745921977140-10.15
CAediting_414656chr5_72878640_+ENSG00000139218.16ENST00000369367hsa-miR-4804-3p45919955459199617mer-m84591995445919974140-9.04
CAediting_1229413chr17_67471544_+ENSG00000139218.16ENST00000369367hsa-miR-548aa45921698459217047mer-m84592169745921724145-10.72
CAediting_1229414chr17_67471546_+ENSG00000139218.16ENST00000369367hsa-miR-548aa45921698459217047mer-m84592169745921724145-10.72
CAediting_1229415chr17_67471547_+ENSG00000139218.16ENST00000369367hsa-miR-548aa45921698459217047mer-m84592169745921724145-10.72
CAediting_228905chr2_188297554_+ENSG00000139218.16ENST00000369367hsa-miR-561-3p45919674459196796mer4591966445919685144-10.61
CAediting_1229413chr17_67471544_+ENSG00000139218.16ENST00000465950hsa-miR-548aa45921698459217047mer-m84592169745921724145-10.72
CAediting_1229414chr17_67471546_+ENSG00000139218.16ENST00000465950hsa-miR-548aa45921698459217047mer-m84592169745921724145-10.72
CAediting_1229415chr17_67471547_+ENSG00000139218.16ENST00000465950hsa-miR-548aa45921698459217047mer-m84592169745921724145-10.72
CAediting_573001chr7_92204086_-ENSG00000139218.16ENST00000395454hsa-miR-1285-5p45955670459556767mer-1a4595567045955692140-19.79
CAediting_573000chr7_92204081_-ENSG00000139218.16ENST00000395454hsa-miR-1285-5p45955670459556767mer-1a4595567045955692140-19.79
CAediting_846604chr11_93733708_-ENSG00000139218.16ENST00000395454hsa-miR-1304-3p45955887459558937mer-m84595588645955907141-12.08
CAediting_1229414chr17_67471546_+ENSG00000139218.16ENST00000395453hsa-miR-548aa45960794459607996mer4596079345960820140-12.82

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SCAF11

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for SCAF11

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LAMLCAediting_882390chr12_45953484_-0.002728455480342230.38649543049346....
STADCAediting_882393chr12_45953508_-0.02655511210064890.301816177558269....

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Relation with cancer stages for SCAF11

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for SCAF11

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for SCAF11

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SCAF11

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource