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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: SLFN11 (CAeditome ID:91607) |
Gene summary for SLFN11 |
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Gene information | Gene symbol | SLFN11 | Gene ID | 91607 |
Gene name | schlafen family member 11 | |
Synonyms | SLFN8/9 | |
Cytomap | 17q12 | |
Type of gene | protein-coding | |
Description | schlafen family member 11 | |
Modification date | 20210518 | |
UniProtAcc | Q7Z7L1 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
SLFN11 | GO:0000049 | Schlafen family member 11 | 23000900 |
SLFN11 | GO:0140603 | Schlafen family member 11 | 29395061 |
SLFN11 | GO:0006974 | Schlafen family member 11 | 29395061 |
SLFN11 | GO:0008156 | Schlafen family member 11 | 29395061 |
SLFN11 | GO:0010942 | Schlafen family member 11 | 29395061 |
SLFN11 | GO:0043111 | Schlafen family member 11 | 29395061 |
SLFN11 | GO:0005634 | Schlafen family member 11 | 0000054 |
SLFN11 | GO:0005634 | Schlafen family member 11 | 22927417 |
SLFN11 | GO:0005634 | Schlafen family member 11 | 29395061 |
SLFN11 | GO:0005654 | Schlafen family member 11 | 0000052 |
SLFN11 | GO:0005829 | Schlafen family member 11 | 0000052 |
SLFN11 | GO:0090734 | Schlafen family member 11 | 29395061 |
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RNA A-to-I events for SLFN11 |
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CAediting_1183434(35360910, -), CAediting_1183435(35360918, -), CAediting_1183436(35366960, -), CAediting_1183437(35366963, -), CAediting_1183438(35366972, -), CAediting_1183439(35366990, -), CAediting_1183440(35367057, -), CAediting_1183441(35367065, -), CAediting_1183442(35368017, -), CAediting_1183443(35368018, -), CAediting_1183444(35368022, -), CAediting_1183445(35368026, -), CAediting_1183446(35368043, -), |
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RNA editing positional annotations for SLFN11 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1183434 | chr17_35360910_- | ncRNA_intronic |
CAediting_1183435 | chr17_35360918_- | ncRNA_intronic |
CAediting_1183436 | chr17_35366960_- | ncRNA_exonic |
CAediting_1183437 | chr17_35366963_- | ncRNA_exonic |
CAediting_1183438 | chr17_35366972_- | ncRNA_exonic |
CAediting_1183439 | chr17_35366990_- | ncRNA_exonic |
CAediting_1183440 | chr17_35367057_- | ncRNA_exonic |
CAediting_1183441 | chr17_35367065_- | ncRNA_exonic;splicing |
CAediting_1183442 | chr17_35368017_- | ncRNA_intronic |
CAediting_1183443 | chr17_35368018_- | ncRNA_intronic |
CAediting_1183444 | chr17_35368022_- | ncRNA_intronic |
CAediting_1183445 | chr17_35368026_- | ncRNA_intronic |
CAediting_1183446 | chr17_35368043_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1183434 | chr17_35360910_- | SINE | Alu | FRAM |
CAediting_1183435 | chr17_35360918_- | SINE | Alu | FRAM |
CAediting_1183436 | chr17_35366960_- | SINE | Alu | AluJb |
CAediting_1183437 | chr17_35366963_- | SINE | Alu | AluJb |
CAediting_1183438 | chr17_35366972_- | SINE | Alu | AluJb |
CAediting_1183439 | chr17_35366990_- | SINE | Alu | AluJb |
CAediting_1183440 | chr17_35367057_- | SINE | Alu | AluJb |
CAediting_1183441 | chr17_35367065_- | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for SLFN11 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_1183440 | chr17_35367057_- | 35367041:35367063 | 3SS | 0+14i | ATTCTTACTTTGACCCCCAGGCT | 6.91 | ATTCTTGCTTTGACCCCCAGGCT | 7.34 |
IR | CAediting_1183440 | chr17_35367057_- | 35367041:35367063 | 3SS | 0+14i | ATTCTTACTTTGACCCCCAGGCT | 6.91 | ATTCTTGCTTTGACCCCCAGGCT | 7.34 |
ES | CAediting_1183441 | chr17_35367065_- | 35367061:35367083 | 3SS | 0+2i | TTTTTTTTTTTTTGAGACAGATT | 4.73 | TTTTTTTTTTTTTGAGACGGATT | -3.23 |
ES | CAediting_1183441 | chr17_35367065_- | 35367065:35367087 | 3SS | 3+0i | TTCTTTTTTTTTTTTTTGAGACA | 1.86 | TTCTTTTTTTTTTTTTTGAGACG | 3.52 |
IR | CAediting_1183441 | chr17_35367065_- | 35367061:35367083 | 3SS | 0+2i | TTTTTTTTTTTTTGAGACAGATT | 4.73 | TTTTTTTTTTTTTGAGACGGATT | -3.23 |
IR | CAediting_1183441 | chr17_35367065_- | 35367065:35367087 | 3SS | 3+0i | TTCTTTTTTTTTTTTTTGAGACA | 1.86 | TTCTTTTTTTTTTTTTTGAGACG | 3.52 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SLFN11 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for SLFN11 |
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The effects of the RNA editing to the miRNA binding sites for SLFN11 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_393 | chr1_1167164_+ | ENSG00000172716.15 | ENST00000308377 | hsa-miR-200b-3p | 35350626 | 35350633 | 8mer-1a | 35350626 | 35350648 | 159 | -15.56 |
CAediting_393 | chr1_1167164_+ | ENSG00000172716.15 | ENST00000394566 | hsa-miR-200b-3p | 35350626 | 35350633 | 8mer-1a | 35350626 | 35350648 | 159 | -15.56 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000172716.15 | ENST00000308377 | hsa-miR-548aa | 35351632 | 35351638 | 7mer-m8 | 35351631 | 35351658 | 151 | -8.88 |
CAediting_228905 | chr2_188297554_+ | ENSG00000172716.15 | ENST00000308377 | hsa-miR-561-3p | 35351135 | 35351141 | 7mer-m8 | 35351134 | 35351155 | 142 | -8.41 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000172716.15 | ENST00000394566 | hsa-miR-548aa | 35351632 | 35351638 | 7mer-m8 | 35351631 | 35351658 | 151 | -8.88 |
CAediting_228905 | chr2_188297554_+ | ENSG00000172716.15 | ENST00000394566 | hsa-miR-561-3p | 35351135 | 35351141 | 7mer-m8 | 35351134 | 35351155 | 142 | -8.41 |
CAediting_442554 | chr5_154685830_+ | ENSG00000172716.15 | ENST00000592108 | hsa-miR-1303 | 35352642 | 35352649 | 8mer-1a | 35352642 | 35352663 | 150 | -18.24 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1524209 | chrX_134546392_- | ENSG00000172716.15 | ENST00000308377 | hsa-miR-503-5p | 35351128 | 35351134 | 7mer-m8 | 35351127 | 35351149 | 151 | -20.36 |
CAediting_1351755 | chr19_40282625_- | ENSG00000172716.15 | ENST00000308377 | hsa-miR-641 | 35350547 | 35350553 | 7mer-m8 | 35350546 | 35350569 | 151 | -14.32 |
CAediting_1524209 | chrX_134546392_- | ENSG00000172716.15 | ENST00000394566 | hsa-miR-503-5p | 35351128 | 35351134 | 7mer-m8 | 35351127 | 35351149 | 151 | -20.36 |
CAediting_1351755 | chr19_40282625_- | ENSG00000172716.15 | ENST00000394566 | hsa-miR-641 | 35350547 | 35350553 | 7mer-m8 | 35350546 | 35350569 | 151 | -14.32 |
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The effects of the RNA editing to the stability of the RNA structures for SLFN11 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for SLFN11 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for SLFN11 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for SLFN11 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for SLFN11 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SLFN11 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |