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Editing gene: SLC28A1 (CAeditome ID:9154)

Gene summary for SLC28A1

Gene summary

Gene information	Gene symbol	SLC28A1
	Gene ID	9154
	Gene name	solute carrier family 28 member 1
	Synonyms	CNT1\|HCNT1\|URCTU
	Cytomap	15q25.3
	Type of gene	protein-coding
	Description	sodium/nucleoside cotransporter 1Na(+)/nucleoside cotransporter 1concentrative nucleoside transporter 1sodium-coupled nucleoside transporter 1solute carrier family 28 (concentrative nucleoside transporter), member 1solute carrier family 28 (sodium-co
	Modification date	20210518
	UniProtAcc	O00337
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SLC28A1	GO:0015212	Sodium/nucleoside cotransporter 1	21998139
SLC28A1	GO:0015213	Sodium/nucleoside cotransporter 1	21998139
SLC28A1	GO:0015213	Sodium/nucleoside cotransporter 1	22492015
SLC28A1	GO:1901474	Sodium/nucleoside cotransporter 1	22813716
SLC28A1	GO:0015861	Sodium/nucleoside cotransporter 1	21998139
SLC28A1	GO:0015862	Sodium/nucleoside cotransporter 1	21998139
SLC28A1	GO:0015862	Sodium/nucleoside cotransporter 1	22492015
SLC28A1	GO:0045117	Sodium/nucleoside cotransporter 1	22813716
SLC28A1	GO:0072531	Sodium/nucleoside cotransporter 1	22492015
SLC28A1	GO:1901642	Sodium/nucleoside cotransporter 1	22492015
SLC28A1	GO:0005829	Sodium/nucleoside cotransporter 1	0000052
SLC28A1	GO:0005886	Sodium/nucleoside cotransporter 1	0000052
SLC28A1	GO:0005886	Sodium/nucleoside cotransporter 1	21998139
SLC28A1	GO:0016607	Sodium/nucleoside cotransporter 1	0000052

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RNA A-to-I events for SLC28A1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000156222.10

RNA A-to-I editing events in Cancer.

CAediting_1066781(84884978, +), CAediting_1066782(84885002, +), CAediting_1066783(84885033, +), CAediting_1066784(84885038, +), CAediting_1066785(84885045, +), CAediting_1066786(84885058, +), CAediting_1066787(84885059, +), CAediting_1066788(84885062, +), CAediting_1066789(84885063, +), CAediting_1066790(84885076, +), CAediting_1066791(84885088, +), CAediting_1066792(84885124, +), CAediting_1066793(84885133, +), CAediting_1066794(84885193, +), CAediting_1066795(84885194, +), CAediting_1066796(84885219, +), CAediting_1066797(84885220, +), CAediting_1066798(84885221, +), CAediting_1066799(84885454, +), CAediting_1066800(84885477, +), CAediting_1066801(84885482, +), CAediting_1066802(84885485, +), CAediting_1066803(84885499, +), CAediting_1066804(84885512, +), CAediting_1066805(84885517, +), CAediting_1066806(84885525, +), CAediting_1066807(84885531, +), CAediting_1066808(84885536, +), CAediting_1066809(84885542, +), CAediting_1066810(84885546, +), CAediting_1066811(84885548, +), CAediting_1066812(84885561, +), CAediting_1066813(84885567, +), CAediting_1066814(84885576, +), CAediting_1066815(84885584, +), CAediting_1066816(84885610, +), CAediting_1066817(84885611, +), CAediting_1066818(84885620, +), CAediting_1066819(84885637, +), CAediting_1066820(84885643, +), CAediting_1066821(84885651, +), CAediting_1066822(84885652, +), CAediting_1066823(84885676, +), CAediting_1066824(84885677, +), CAediting_1066825(84885681, +), CAediting_1066826(84887429, +), CAediting_1066827(84889879, +), CAediting_1066828(84889935, +), CAediting_1066829(84889975, +), CAediting_1066830(84890049, +), CAediting_1066831(84890070, +), CAediting_1066832(84890096, +), CAediting_1066833(84890097, +), CAediting_1066834(84890109, +), CAediting_1066835(84892064, +), CAediting_1066836(84894116, +), CAediting_1066837(84894252, +), CAediting_1066838(84894261, +), CAediting_1066839(84894274, +), CAediting_1066840(84896665, +), CAediting_1066841(84896774, +), CAediting_1066842(84896949, +), CAediting_1066843(84900178, +), CAediting_1066844(84900182, +), CAediting_1066845(84900583, +), CAediting_1066846(84900698, +), CAediting_1066847(84911779, +), CAediting_1066848(84916345, +), CAediting_1066849(84924964, +), CAediting_1066850(84925034, +), CAediting_1066851(84925040, +), CAediting_1066852(84925365, +), CAediting_1066853(84925393, +), CAediting_1066854(84925415, +), CAediting_1066855(84925479, +), CAediting_1066856(84925480, +), CAediting_1066857(84925485, +), CAediting_1066858(84925503, +), CAediting_1066859(84925506, +), CAediting_1066860(84925521, +), CAediting_1066861(84925534, +), CAediting_1066862(84925541, +), CAediting_1066863(84925557, +), CAediting_1066864(84926238, +), CAediting_1066865(84926243, +), CAediting_1066866(84926302, +), CAediting_1066867(84926303, +), CAediting_1066868(84926412, +), CAediting_1066869(84929388, +), CAediting_1066870(84929401, +), CAediting_1066871(84929437, +), CAediting_1066872(84929476, +), CAediting_1066873(84930733, +), CAediting_1066874(84930735, +), CAediting_1066875(84930828, +), CAediting_1066876(84931039, +), CAediting_1066877(84931855, +), CAediting_1066878(84931881, +), CAediting_1066879(84931891, +), CAediting_1066880(84931908, +), CAediting_1066881(84931921, +), CAediting_1066882(84936085, +), CAediting_1066883(84936121, +), CAediting_1066884(84936182, +), CAediting_1066885(84936204, +), CAediting_1066886(84936283, +), CAediting_1066887(84936308, +), CAediting_1066888(84936332, +), CAediting_1066889(84936338, +), CAediting_1066890(84936375, +), CAediting_1066891(84936384, +), CAediting_1066892(84936387, +), CAediting_1066893(84936397, +), CAediting_1066894(84936413, +), CAediting_1066895(84936438, +), CAediting_1066896(84936441, +), CAediting_1066897(84936457, +), CAediting_1066898(84936478, +), CAediting_1066899(84936491, +), CAediting_1066900(84936492, +), CAediting_1066901(84936493, +), CAediting_1066902(84936495, +), CAediting_1066903(84936519, +), CAediting_1066904(84936797, +), CAediting_1066905(84936806, +), CAediting_1066906(84936820, +), CAediting_1066907(84936827, +), CAediting_1066908(84936833, +), CAediting_1066909(84936838, +), CAediting_1066910(84936843, +), CAediting_1066911(84936851, +), CAediting_1066912(84936852, +), CAediting_1066913(84936869, +), CAediting_1066914(84936871, +), CAediting_1066915(84936872, +), CAediting_1066916(84936875, +), CAediting_1066917(84936888, +), CAediting_1066918(84936891, +), CAediting_1066919(84936892, +), CAediting_1066920(84936894, +), CAediting_1066921(84936895, +), CAediting_1066922(84936903, +), CAediting_1066923(84936904, +), CAediting_1066924(84936916, +), CAediting_1066925(84936932, +), CAediting_1066926(84936955, +), CAediting_1066927(84936978, +), CAediting_1066928(84936998, +), CAediting_1066929(84937002, +), CAediting_1066930(84937041, +), CAediting_1066931(84937624, +), CAediting_1066932(84937628, +), CAediting_1066933(84937640, +), CAediting_1066934(84937647, +), CAediting_1066935(84937755, +), CAediting_1066936(84937817, +), CAediting_1066937(84937818, +), CAediting_1066938(84937825, +), CAediting_1066939(84937836, +), CAediting_1066940(84937862, +), CAediting_1066941(84937876, +), CAediting_1066942(84937877, +), CAediting_1066943(84937936, +), CAediting_1066944(84937938, +), CAediting_1066945(84937944, +), CAediting_1066946(84937945, +), CAediting_1066947(84937980, +), CAediting_1066948(84937985, +), CAediting_1066949(84938053, +), CAediting_1066950(84938057, +), CAediting_1066951(84938069, +), CAediting_1066952(84938079, +), CAediting_1066953(84938107, +), CAediting_1066954(84938120, +), CAediting_1066955(84938121, +), CAediting_1066956(84938125, +), CAediting_1066957(84938141, +), CAediting_1066958(84938145, +), CAediting_1066959(84938150, +), CAediting_1066960(84938155, +), CAediting_1066961(84938190, +), CAediting_1066962(84938196, +), CAediting_1066963(84939058, +), CAediting_1066964(84939086, +), CAediting_1066965(84939087, +), CAediting_1066966(84939105, +), CAediting_1066967(84939118, +), CAediting_1066968(84939136, +), CAediting_1066969(84939141, +), CAediting_1066970(84939173, +), CAediting_1066971(84939177, +), CAediting_1066972(84939222, +), CAediting_1066973(84939226, +), CAediting_1066974(84939245, +), CAediting_1066975(84939248, +), CAediting_1066976(84939250, +), CAediting_1066977(84939269, +), CAediting_1066978(84939295, +), CAediting_1066979(84939856, +), CAediting_1066980(84939894, +), CAediting_1066981(84939924, +), CAediting_1066982(84939925, +), CAediting_1066983(84939953, +), CAediting_1066984(84939963, +), CAediting_1066985(84939967, +), CAediting_1066986(84939981, +), CAediting_1066987(84940011, +), CAediting_1066988(84940030, +), CAediting_1066989(84940037, +), CAediting_1066990(84940038, +), CAediting_1066991(84940048, +), CAediting_1066992(84940049, +), CAediting_1066993(84940050, +), CAediting_1066994(84940062, +), CAediting_1066995(84940063, +), CAediting_1066996(84940066, +), CAediting_1066997(84940089, +), CAediting_1066998(84940090, +), CAediting_1066999(84940102, +), CAediting_1067000(84940104, +), CAediting_1067001(84940108, +), CAediting_1067002(84941404, +), CAediting_1067003(84941466, +), CAediting_1067004(84941467, +), CAediting_1067005(84941610, +), CAediting_1067006(84941628, +), CAediting_1067007(84941629, +), CAediting_1067008(84941635, +), CAediting_1067009(84941637, +), CAediting_1067010(84941683, +), CAediting_1067011(84941706, +), CAediting_1067012(84941716, +), CAediting_1067013(84941729, +), CAediting_1067014(84941738, +), CAediting_1067015(84941745, +), CAediting_1067016(84941751, +), CAediting_1067017(84941752, +), CAediting_1067018(84941774, +), CAediting_1067019(84941775, +), CAediting_1067020(84941781, +), CAediting_1067021(84941784, +), CAediting_1067022(84942923, +), CAediting_1067023(84942930, +), CAediting_1067024(84942935, +), CAediting_1067025(84942970, +), CAediting_1067026(84943001, +), CAediting_1067027(84943009, +), CAediting_1067028(84943026, +), CAediting_1067029(84943029, +), CAediting_1067030(84943039, +), CAediting_1067031(84943065, +), CAediting_1067032(84943107, +), CAediting_1067033(84943136, +), CAediting_1067034(84943174, +), CAediting_1067035(84943651, +), CAediting_1067036(84943674, +), CAediting_1067037(84943745, +), CAediting_1067038(84943750, +), CAediting_1067039(84943752, +), CAediting_1067040(84943786, +), CAediting_1067041(84943814, +),

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RNA editing positional annotations for SLC28A1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1066781	chr15_84884978_+	intronic
CAediting_1066782	chr15_84885002_+	intronic
CAediting_1066783	chr15_84885033_+	intronic
CAediting_1066784	chr15_84885038_+	intronic
CAediting_1066785	chr15_84885045_+	intronic
CAediting_1066786	chr15_84885058_+	intronic
CAediting_1066787	chr15_84885059_+	intronic
CAediting_1066788	chr15_84885062_+	intronic
CAediting_1066789	chr15_84885063_+	intronic
CAediting_1066790	chr15_84885076_+	intronic
CAediting_1066791	chr15_84885088_+	intronic
CAediting_1066792	chr15_84885124_+	intronic
CAediting_1066793	chr15_84885133_+	intronic
CAediting_1066794	chr15_84885193_+	intronic
CAediting_1066795	chr15_84885194_+	intronic
CAediting_1066796	chr15_84885219_+	intronic
CAediting_1066797	chr15_84885220_+	intronic
CAediting_1066798	chr15_84885221_+	intronic
CAediting_1066799	chr15_84885454_+	intronic
CAediting_1066800	chr15_84885477_+	intronic
CAediting_1066801	chr15_84885482_+	intronic
CAediting_1066802	chr15_84885485_+	intronic
CAediting_1066803	chr15_84885499_+	intronic
CAediting_1066804	chr15_84885512_+	intronic
CAediting_1066805	chr15_84885517_+	intronic
CAediting_1066806	chr15_84885525_+	intronic
CAediting_1066807	chr15_84885531_+	intronic
CAediting_1066808	chr15_84885536_+	intronic
CAediting_1066809	chr15_84885542_+	intronic
CAediting_1066810	chr15_84885546_+	intronic
CAediting_1066811	chr15_84885548_+	intronic
CAediting_1066812	chr15_84885561_+	intronic
CAediting_1066813	chr15_84885567_+	intronic
CAediting_1066814	chr15_84885576_+	intronic
CAediting_1066815	chr15_84885584_+	intronic
CAediting_1066816	chr15_84885610_+	intronic
CAediting_1066817	chr15_84885611_+	intronic
CAediting_1066818	chr15_84885620_+	intronic
CAediting_1066819	chr15_84885637_+	intronic
CAediting_1066820	chr15_84885643_+	intronic
CAediting_1066821	chr15_84885651_+	intronic
CAediting_1066822	chr15_84885652_+	intronic
CAediting_1066823	chr15_84885676_+	intronic
CAediting_1066824	chr15_84885677_+	intronic
CAediting_1066825	chr15_84885681_+	intronic
CAediting_1066826	chr15_84887429_+	intronic
CAediting_1066827	chr15_84889879_+	intronic
CAediting_1066828	chr15_84889935_+	intronic
CAediting_1066829	chr15_84889975_+	intronic
CAediting_1066830	chr15_84890049_+	intronic
CAediting_1066831	chr15_84890070_+	intronic
CAediting_1066832	chr15_84890096_+	intronic
CAediting_1066833	chr15_84890097_+	intronic
CAediting_1066834	chr15_84890109_+	intronic
CAediting_1066835	chr15_84892064_+	intronic
CAediting_1066836	chr15_84894116_+	intronic
CAediting_1066837	chr15_84894252_+	intronic
CAediting_1066838	chr15_84894261_+	intronic
CAediting_1066839	chr15_84894274_+	intronic
CAediting_1066840	chr15_84896665_+	intronic
CAediting_1066841	chr15_84896774_+	intronic
CAediting_1066842	chr15_84896949_+	intronic
CAediting_1066843	chr15_84900178_+	intronic
CAediting_1066844	chr15_84900182_+	intronic
CAediting_1066845	chr15_84900583_+	intronic
CAediting_1066846	chr15_84900698_+	intronic
CAediting_1066847	chr15_84911779_+	intronic
CAediting_1066848	chr15_84916345_+	intronic
CAediting_1066849	chr15_84924964_+	intronic
CAediting_1066850	chr15_84925034_+	intronic
CAediting_1066851	chr15_84925040_+	intronic
CAediting_1066852	chr15_84925365_+	intronic
CAediting_1066853	chr15_84925393_+	intronic
CAediting_1066854	chr15_84925415_+	intronic
CAediting_1066855	chr15_84925479_+	intronic
CAediting_1066856	chr15_84925480_+	intronic
CAediting_1066857	chr15_84925485_+	intronic
CAediting_1066858	chr15_84925503_+	intronic
CAediting_1066859	chr15_84925506_+	intronic
CAediting_1066860	chr15_84925521_+	intronic
CAediting_1066861	chr15_84925534_+	intronic
CAediting_1066862	chr15_84925541_+	intronic
CAediting_1066863	chr15_84925557_+	intronic
CAediting_1066864	chr15_84926238_+	intronic
CAediting_1066865	chr15_84926243_+	intronic
CAediting_1066866	chr15_84926302_+	intronic
CAediting_1066867	chr15_84926303_+	intronic
CAediting_1066868	chr15_84926412_+	intronic
CAediting_1066869	chr15_84929388_+	intronic
CAediting_1066870	chr15_84929401_+	intronic
CAediting_1066871	chr15_84929437_+	intronic
CAediting_1066872	chr15_84929476_+	intronic
CAediting_1066873	chr15_84930733_+	intronic
CAediting_1066874	chr15_84930735_+	intronic
CAediting_1066875	chr15_84930828_+	intronic
CAediting_1066876	chr15_84931039_+	intronic
CAediting_1066877	chr15_84931855_+	intronic
CAediting_1066878	chr15_84931881_+	intronic
CAediting_1066879	chr15_84931891_+	intronic
CAediting_1066880	chr15_84931908_+	intronic
CAediting_1066881	chr15_84931921_+	intronic
CAediting_1066882	chr15_84936085_+	intronic
CAediting_1066883	chr15_84936121_+	intronic
CAediting_1066884	chr15_84936182_+	intronic
CAediting_1066885	chr15_84936204_+	intronic
CAediting_1066886	chr15_84936283_+	intronic
CAediting_1066887	chr15_84936308_+	intronic
CAediting_1066888	chr15_84936332_+	intronic
CAediting_1066889	chr15_84936338_+	intronic
CAediting_1066890	chr15_84936375_+	intronic
CAediting_1066891	chr15_84936384_+	intronic
CAediting_1066892	chr15_84936387_+	intronic
CAediting_1066893	chr15_84936397_+	intronic
CAediting_1066894	chr15_84936413_+	intronic
CAediting_1066895	chr15_84936438_+	intronic
CAediting_1066896	chr15_84936441_+	intronic
CAediting_1066897	chr15_84936457_+	intronic
CAediting_1066898	chr15_84936478_+	intronic
CAediting_1066899	chr15_84936491_+	intronic
CAediting_1066900	chr15_84936492_+	intronic
CAediting_1066901	chr15_84936493_+	intronic
CAediting_1066902	chr15_84936495_+	intronic
CAediting_1066903	chr15_84936519_+	intronic
CAediting_1066904	chr15_84936797_+	intronic
CAediting_1066905	chr15_84936806_+	intronic
CAediting_1066906	chr15_84936820_+	intronic
CAediting_1066907	chr15_84936827_+	intronic
CAediting_1066908	chr15_84936833_+	intronic
CAediting_1066909	chr15_84936838_+	intronic
CAediting_1066910	chr15_84936843_+	intronic
CAediting_1066911	chr15_84936851_+	intronic
CAediting_1066912	chr15_84936852_+	intronic
CAediting_1066913	chr15_84936869_+	intronic
CAediting_1066914	chr15_84936871_+	intronic
CAediting_1066915	chr15_84936872_+	intronic
CAediting_1066916	chr15_84936875_+	intronic
CAediting_1066917	chr15_84936888_+	intronic
CAediting_1066918	chr15_84936891_+	intronic
CAediting_1066919	chr15_84936892_+	intronic
CAediting_1066920	chr15_84936894_+	intronic
CAediting_1066921	chr15_84936895_+	intronic
CAediting_1066922	chr15_84936903_+	intronic
CAediting_1066923	chr15_84936904_+	intronic
CAediting_1066924	chr15_84936916_+	intronic
CAediting_1066925	chr15_84936932_+	intronic
CAediting_1066926	chr15_84936955_+	intronic
CAediting_1066927	chr15_84936978_+	intronic
CAediting_1066928	chr15_84936998_+	intronic
CAediting_1066929	chr15_84937002_+	intronic
CAediting_1066930	chr15_84937041_+	intronic
CAediting_1066931	chr15_84937624_+	intronic
CAediting_1066932	chr15_84937628_+	intronic
CAediting_1066933	chr15_84937640_+	intronic
CAediting_1066934	chr15_84937647_+	intronic
CAediting_1066935	chr15_84937755_+	intronic
CAediting_1066936	chr15_84937817_+	intronic
CAediting_1066937	chr15_84937818_+	intronic
CAediting_1066938	chr15_84937825_+	intronic
CAediting_1066939	chr15_84937836_+	intronic
CAediting_1066940	chr15_84937862_+	intronic
CAediting_1066941	chr15_84937876_+	intronic
CAediting_1066942	chr15_84937877_+	intronic
CAediting_1066943	chr15_84937936_+	intronic
CAediting_1066944	chr15_84937938_+	intronic
CAediting_1066945	chr15_84937944_+	intronic
CAediting_1066946	chr15_84937945_+	intronic
CAediting_1066947	chr15_84937980_+	intronic
CAediting_1066948	chr15_84937985_+	intronic
CAediting_1066949	chr15_84938053_+	intronic
CAediting_1066950	chr15_84938057_+	intronic
CAediting_1066951	chr15_84938069_+	intronic
CAediting_1066952	chr15_84938079_+	intronic
CAediting_1066953	chr15_84938107_+	intronic
CAediting_1066954	chr15_84938120_+	intronic
CAediting_1066955	chr15_84938121_+	intronic
CAediting_1066956	chr15_84938125_+	intronic
CAediting_1066957	chr15_84938141_+	intronic
CAediting_1066958	chr15_84938145_+	intronic
CAediting_1066959	chr15_84938150_+	intronic
CAediting_1066960	chr15_84938155_+	intronic
CAediting_1066961	chr15_84938190_+	intronic
CAediting_1066962	chr15_84938196_+	intronic
CAediting_1066963	chr15_84939058_+	intronic
CAediting_1066964	chr15_84939086_+	intronic
CAediting_1066965	chr15_84939087_+	intronic
CAediting_1066966	chr15_84939105_+	intronic
CAediting_1066967	chr15_84939118_+	intronic
CAediting_1066968	chr15_84939136_+	intronic
CAediting_1066969	chr15_84939141_+	intronic
CAediting_1066970	chr15_84939173_+	intronic
CAediting_1066971	chr15_84939177_+	intronic
CAediting_1066972	chr15_84939222_+	intronic
CAediting_1066973	chr15_84939226_+	intronic
CAediting_1066974	chr15_84939245_+	intronic
CAediting_1066975	chr15_84939248_+	intronic
CAediting_1066976	chr15_84939250_+	intronic
CAediting_1066977	chr15_84939269_+	intronic
CAediting_1066978	chr15_84939295_+	intronic
CAediting_1066979	chr15_84939856_+	intronic
CAediting_1066980	chr15_84939894_+	intronic
CAediting_1066981	chr15_84939924_+	intronic
CAediting_1066982	chr15_84939925_+	intronic
CAediting_1066983	chr15_84939953_+	intronic
CAediting_1066984	chr15_84939963_+	intronic
CAediting_1066985	chr15_84939967_+	intronic
CAediting_1066986	chr15_84939981_+	intronic
CAediting_1066987	chr15_84940011_+	intronic
CAediting_1066988	chr15_84940030_+	intronic
CAediting_1066989	chr15_84940037_+	intronic
CAediting_1066990	chr15_84940038_+	intronic
CAediting_1066991	chr15_84940048_+	intronic
CAediting_1066992	chr15_84940049_+	intronic
CAediting_1066993	chr15_84940050_+	intronic
CAediting_1066994	chr15_84940062_+	intronic
CAediting_1066995	chr15_84940063_+	intronic
CAediting_1066996	chr15_84940066_+	intronic
CAediting_1066997	chr15_84940089_+	intronic
CAediting_1066998	chr15_84940090_+	intronic
CAediting_1066999	chr15_84940102_+	intronic
CAediting_1067000	chr15_84940104_+	intronic
CAediting_1067001	chr15_84940108_+	intronic
CAediting_1067002	chr15_84941404_+	intronic
CAediting_1067003	chr15_84941466_+	intronic
CAediting_1067004	chr15_84941467_+	intronic
CAediting_1067005	chr15_84941610_+	intronic
CAediting_1067006	chr15_84941628_+	intronic
CAediting_1067007	chr15_84941629_+	intronic
CAediting_1067008	chr15_84941635_+	intronic
CAediting_1067009	chr15_84941637_+	intronic
CAediting_1067010	chr15_84941683_+	intronic
CAediting_1067011	chr15_84941706_+	intronic
CAediting_1067012	chr15_84941716_+	intronic
CAediting_1067013	chr15_84941729_+	intronic
CAediting_1067014	chr15_84941738_+	intronic
CAediting_1067015	chr15_84941745_+	intronic
CAediting_1067016	chr15_84941751_+	intronic
CAediting_1067017	chr15_84941752_+	intronic
CAediting_1067018	chr15_84941774_+	intronic
CAediting_1067019	chr15_84941775_+	intronic
CAediting_1067020	chr15_84941781_+	intronic
CAediting_1067021	chr15_84941784_+	intronic
CAediting_1067022	chr15_84942923_+	intronic
CAediting_1067023	chr15_84942930_+	intronic
CAediting_1067024	chr15_84942935_+	intronic
CAediting_1067025	chr15_84942970_+	intronic
CAediting_1067026	chr15_84943001_+	intronic
CAediting_1067027	chr15_84943009_+	intronic
CAediting_1067028	chr15_84943026_+	intronic
CAediting_1067029	chr15_84943029_+	intronic
CAediting_1067030	chr15_84943039_+	intronic
CAediting_1067031	chr15_84943065_+	intronic
CAediting_1067032	chr15_84943107_+	intronic
CAediting_1067033	chr15_84943136_+	intronic
CAediting_1067034	chr15_84943174_+	intronic
CAediting_1067035	chr15_84943651_+	intronic
CAediting_1067036	chr15_84943674_+	intronic
CAediting_1067037	chr15_84943745_+	intronic
CAediting_1067038	chr15_84943750_+	intronic
CAediting_1067039	chr15_84943752_+	intronic
CAediting_1067040	chr15_84943786_+	intronic
CAediting_1067041	chr15_84943814_+	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1066781	chr15_84884978_+	SINE	Alu	AluSx1
CAediting_1066782	chr15_84885002_+	SINE	Alu	AluSx1
CAediting_1066783	chr15_84885033_+	SINE	Alu	AluSx1
CAediting_1066784	chr15_84885038_+	SINE	Alu	AluSx1
CAediting_1066785	chr15_84885045_+	SINE	Alu	AluSx1
CAediting_1066786	chr15_84885058_+	SINE	Alu	AluSx1
CAediting_1066787	chr15_84885059_+	SINE	Alu	AluSx1
CAediting_1066788	chr15_84885062_+	SINE	Alu	AluSx1
CAediting_1066789	chr15_84885063_+	SINE	Alu	AluSx1
CAediting_1066790	chr15_84885076_+	SINE	Alu	AluSx1
CAediting_1066791	chr15_84885088_+	SINE	Alu	AluSx1
CAediting_1066792	chr15_84885124_+	SINE	Alu	AluSx1
CAediting_1066793	chr15_84885133_+	SINE	Alu	AluSx1
CAediting_1066794	chr15_84885193_+	SINE	Alu	AluSx1
CAediting_1066795	chr15_84885194_+	SINE	Alu	AluSx1
CAediting_1066796	chr15_84885219_+	SINE	Alu	AluSx1
CAediting_1066797	chr15_84885220_+	SINE	Alu	AluSx1
CAediting_1066798	chr15_84885221_+	SINE	Alu	AluSx1
CAediting_1066799	chr15_84885454_+	SINE	Alu	AluSp
CAediting_1066800	chr15_84885477_+	SINE	Alu	AluSp
CAediting_1066801	chr15_84885482_+	SINE	Alu	AluSp
CAediting_1066802	chr15_84885485_+	SINE	Alu	AluSp
CAediting_1066803	chr15_84885499_+	SINE	Alu	AluSp
CAediting_1066804	chr15_84885512_+	SINE	Alu	AluSp
CAediting_1066805	chr15_84885517_+	SINE	Alu	AluSp
CAediting_1066806	chr15_84885525_+	SINE	Alu	AluSp
CAediting_1066807	chr15_84885531_+	SINE	Alu	AluSp
CAediting_1066808	chr15_84885536_+	SINE	Alu	AluSp
CAediting_1066809	chr15_84885542_+	SINE	Alu	AluSp
CAediting_1066810	chr15_84885546_+	SINE	Alu	AluSp
CAediting_1066811	chr15_84885548_+	SINE	Alu	AluSp
CAediting_1066812	chr15_84885561_+	SINE	Alu	AluSp
CAediting_1066813	chr15_84885567_+	SINE	Alu	AluSp
CAediting_1066814	chr15_84885576_+	SINE	Alu	AluSp
CAediting_1066815	chr15_84885584_+	SINE	Alu	AluSp
CAediting_1066816	chr15_84885610_+	SINE	Alu	AluSp
CAediting_1066817	chr15_84885611_+	SINE	Alu	AluSp
CAediting_1066818	chr15_84885620_+	SINE	Alu	AluSp
CAediting_1066819	chr15_84885637_+	SINE	Alu	AluSp
CAediting_1066820	chr15_84885643_+	SINE	Alu	AluSp
CAediting_1066821	chr15_84885651_+	SINE	Alu	AluSp
CAediting_1066822	chr15_84885652_+	SINE	Alu	AluSp
CAediting_1066823	chr15_84885676_+	SINE	Alu	AluSp
CAediting_1066824	chr15_84885677_+	SINE	Alu	AluSp
CAediting_1066825	chr15_84885681_+	SINE	Alu	AluSp
CAediting_1066826	chr15_84887429_+	SINE	Alu	AluJo
CAediting_1066827	chr15_84889879_+	SINE	Alu	AluJb
CAediting_1066828	chr15_84889935_+	SINE	Alu	AluJb
CAediting_1066829	chr15_84889975_+	SINE	Alu	AluJb
CAediting_1066830	chr15_84890049_+	SINE	Alu	AluJb
CAediting_1066831	chr15_84890070_+	SINE	Alu	AluJb
CAediting_1066832	chr15_84890096_+	SINE	Alu	AluJb
CAediting_1066833	chr15_84890097_+	SINE	Alu	AluJb
CAediting_1066834	chr15_84890109_+	SINE	Alu	AluJb
CAediting_1066835	chr15_84892064_+	SINE	Alu	AluJo
CAediting_1066836	chr15_84894116_+	SINE	Alu	AluSx1
CAediting_1066837	chr15_84894252_+	SINE	Alu	AluSx1
CAediting_1066838	chr15_84894261_+	SINE	Alu	AluSx1
CAediting_1066839	chr15_84894274_+	SINE	Alu	AluSx1
CAediting_1066840	chr15_84896665_+	SINE	Alu	AluSq4
CAediting_1066841	chr15_84896774_+	LINE	L1	L1MB8
CAediting_1066842	chr15_84896949_+	LINE	L1	L1MB8
CAediting_1066843	chr15_84900178_+	SINE	Alu	AluSz6
CAediting_1066844	chr15_84900182_+	SINE	Alu	AluSz6
CAediting_1066845	chr15_84900583_+	SINE	Alu	AluJo
CAediting_1066846	chr15_84900698_+	SINE	Alu	AluJo
CAediting_1066847	chr15_84911779_+	SINE	Alu	AluSx1
CAediting_1066848	chr15_84916345_+	SINE	Alu	AluJo
CAediting_1066849	chr15_84924964_+	SINE	Alu	AluSc5
CAediting_1066850	chr15_84925034_+	SINE	Alu	AluSc5
CAediting_1066851	chr15_84925040_+	SINE	Alu	AluSc5
CAediting_1066852	chr15_84925365_+	SINE	Alu	AluSx1
CAediting_1066853	chr15_84925393_+	SINE	Alu	AluSx1
CAediting_1066854	chr15_84925415_+	SINE	Alu	AluSx1
CAediting_1066855	chr15_84925479_+	SINE	Alu	AluSx1
CAediting_1066856	chr15_84925480_+	SINE	Alu	AluSx1
CAediting_1066857	chr15_84925485_+	SINE	Alu	AluSx1
CAediting_1066858	chr15_84925503_+	SINE	Alu	AluSx1
CAediting_1066859	chr15_84925506_+	SINE	Alu	AluSx1
CAediting_1066860	chr15_84925521_+	SINE	Alu	AluSx1
CAediting_1066861	chr15_84925534_+	SINE	Alu	AluSx1
CAediting_1066862	chr15_84925541_+	SINE	Alu	AluSx1
CAediting_1066863	chr15_84925557_+	SINE	Alu	AluSx1
CAediting_1066864	chr15_84926238_+	SINE	Alu	AluJo
CAediting_1066865	chr15_84926243_+	SINE	Alu	AluJo
CAediting_1066866	chr15_84926302_+	SINE	Alu	AluJo
CAediting_1066867	chr15_84926303_+	SINE	Alu	AluJo
CAediting_1066868	chr15_84926412_+	SINE	Alu	AluJo
CAediting_1066869	chr15_84929388_+	SINE	Alu	AluSx1
CAediting_1066870	chr15_84929401_+	SINE	Alu	AluSx1
CAediting_1066871	chr15_84929437_+	SINE	Alu	AluSx1
CAediting_1066872	chr15_84929476_+	SINE	Alu	AluSx1
CAediting_1066873	chr15_84930733_+	SINE	Alu	AluSx1
CAediting_1066874	chr15_84930735_+	SINE	Alu	AluSx1
CAediting_1066875	chr15_84930828_+	SINE	Alu	AluSx3
CAediting_1066876	chr15_84931039_+	SINE	Alu	AluSx3
CAediting_1066877	chr15_84931855_+	SINE	Alu	AluSg
CAediting_1066878	chr15_84931881_+	SINE	Alu	AluSg
CAediting_1066879	chr15_84931891_+	SINE	Alu	AluSg
CAediting_1066880	chr15_84931908_+	SINE	Alu	AluSg
CAediting_1066881	chr15_84931921_+	SINE	Alu	AluSg
CAediting_1066882	chr15_84936085_+	SINE	Alu	AluYc3
CAediting_1066883	chr15_84936121_+	SINE	Alu	AluYc3
CAediting_1066884	chr15_84936182_+	SINE	Alu	AluYc3
CAediting_1066885	chr15_84936204_+	SINE	Alu	AluYc3
CAediting_1066886	chr15_84936283_+	SINE	Alu	AluSx1
CAediting_1066887	chr15_84936308_+	SINE	Alu	AluSx1
CAediting_1066888	chr15_84936332_+	SINE	Alu	AluSx1
CAediting_1066889	chr15_84936338_+	SINE	Alu	AluSx1
CAediting_1066890	chr15_84936375_+	SINE	Alu	AluSx1
CAediting_1066891	chr15_84936384_+	SINE	Alu	AluSx1
CAediting_1066892	chr15_84936387_+	SINE	Alu	AluSx1
CAediting_1066893	chr15_84936397_+	SINE	Alu	AluSx1
CAediting_1066894	chr15_84936413_+	SINE	Alu	AluSx1
CAediting_1066895	chr15_84936438_+	SINE	Alu	AluSx1
CAediting_1066896	chr15_84936441_+	SINE	Alu	AluSx1
CAediting_1066897	chr15_84936457_+	SINE	Alu	AluSx1
CAediting_1066898	chr15_84936478_+	SINE	Alu	AluSx1
CAediting_1066899	chr15_84936491_+	SINE	Alu	AluSx1
CAediting_1066900	chr15_84936492_+	SINE	Alu	AluSx1
CAediting_1066901	chr15_84936493_+	SINE	Alu	AluSx1
CAediting_1066902	chr15_84936495_+	SINE	Alu	AluSx1
CAediting_1066903	chr15_84936519_+	SINE	Alu	AluSx1
CAediting_1066904	chr15_84936797_+	SINE	Alu	AluJr
CAediting_1066905	chr15_84936806_+	SINE	Alu	AluJr
CAediting_1066906	chr15_84936820_+	SINE	Alu	AluJr
CAediting_1066907	chr15_84936827_+	SINE	Alu	AluJr
CAediting_1066908	chr15_84936833_+	SINE	Alu	AluJr
CAediting_1066909	chr15_84936838_+	SINE	Alu	AluJr
CAediting_1066910	chr15_84936843_+	SINE	Alu	AluJr
CAediting_1066911	chr15_84936851_+	SINE	Alu	AluJr
CAediting_1066912	chr15_84936852_+	SINE	Alu	AluJr
CAediting_1066913	chr15_84936869_+	SINE	Alu	AluJr
CAediting_1066914	chr15_84936871_+	SINE	Alu	AluJr
CAediting_1066915	chr15_84936872_+	SINE	Alu	AluJr
CAediting_1066916	chr15_84936875_+	SINE	Alu	AluJr
CAediting_1066917	chr15_84936888_+	SINE	Alu	AluJr
CAediting_1066918	chr15_84936891_+	SINE	Alu	AluJr
CAediting_1066919	chr15_84936892_+	SINE	Alu	AluJr
CAediting_1066920	chr15_84936894_+	SINE	Alu	AluJr
CAediting_1066921	chr15_84936895_+	SINE	Alu	AluJr
CAediting_1066922	chr15_84936903_+	SINE	Alu	AluJr
CAediting_1066923	chr15_84936904_+	SINE	Alu	AluJr
CAediting_1066924	chr15_84936916_+	SINE	Alu	AluJr
CAediting_1066925	chr15_84936932_+	SINE	Alu	AluJr
CAediting_1066926	chr15_84936955_+	SINE	Alu	AluJr
CAediting_1066927	chr15_84936978_+	SINE	Alu	AluJr
CAediting_1066928	chr15_84936998_+	SINE	Alu	AluJr
CAediting_1066929	chr15_84937002_+	SINE	Alu	AluJr
CAediting_1066930	chr15_84937041_+	SINE	Alu	AluJr
CAediting_1066931	chr15_84937624_+	SINE	Alu	AluSz6
CAediting_1066932	chr15_84937628_+	SINE	Alu	AluSz6
CAediting_1066933	chr15_84937640_+	SINE	Alu	AluSz6
CAediting_1066934	chr15_84937647_+	SINE	Alu	AluSz6
CAediting_1066935	chr15_84937755_+	SINE	Alu	AluSz6
CAediting_1066936	chr15_84937817_+	SINE	Alu	AluSz6
CAediting_1066937	chr15_84937818_+	SINE	Alu	AluSz6
CAediting_1066938	chr15_84937825_+	SINE	Alu	AluSz6
CAediting_1066939	chr15_84937836_+	SINE	Alu	AluSz6
CAediting_1066940	chr15_84937862_+	SINE	Alu	AluSz6
CAediting_1066941	chr15_84937876_+	SINE	Alu	AluSz6
CAediting_1066942	chr15_84937877_+	SINE	Alu	AluSz6
CAediting_1066943	chr15_84937936_+	SINE	Alu	AluSp
CAediting_1066944	chr15_84937938_+	SINE	Alu	AluSp
CAediting_1066945	chr15_84937944_+	SINE	Alu	AluSp
CAediting_1066946	chr15_84937945_+	SINE	Alu	AluSp
CAediting_1066947	chr15_84937980_+	SINE	Alu	AluSp
CAediting_1066948	chr15_84937985_+	SINE	Alu	AluSp
CAediting_1066949	chr15_84938053_+	SINE	Alu	AluSp
CAediting_1066950	chr15_84938057_+	SINE	Alu	AluSp
CAediting_1066951	chr15_84938069_+	SINE	Alu	AluSp
CAediting_1066952	chr15_84938079_+	SINE	Alu	AluSp
CAediting_1066953	chr15_84938107_+	SINE	Alu	AluSp
CAediting_1066954	chr15_84938120_+	SINE	Alu	AluSp
CAediting_1066955	chr15_84938121_+	SINE	Alu	AluSp
CAediting_1066956	chr15_84938125_+	SINE	Alu	AluSp
CAediting_1066957	chr15_84938141_+	SINE	Alu	AluSp
CAediting_1066958	chr15_84938145_+	SINE	Alu	AluSp
CAediting_1066959	chr15_84938150_+	SINE	Alu	AluSp
CAediting_1066960	chr15_84938155_+	SINE	Alu	AluSp
CAediting_1066961	chr15_84938190_+	SINE	Alu	AluSp
CAediting_1066962	chr15_84938196_+	SINE	Alu	AluSp
CAediting_1066963	chr15_84939058_+	SINE	Alu	AluJr
CAediting_1066964	chr15_84939086_+	SINE	Alu	AluJr
CAediting_1066965	chr15_84939087_+	SINE	Alu	AluJr
CAediting_1066966	chr15_84939105_+	SINE	Alu	AluJr
CAediting_1066967	chr15_84939118_+	SINE	Alu	AluJr
CAediting_1066968	chr15_84939136_+	SINE	Alu	AluJr
CAediting_1066969	chr15_84939141_+	SINE	Alu	AluJr
CAediting_1066970	chr15_84939173_+	SINE	Alu	AluJr
CAediting_1066971	chr15_84939177_+	SINE	Alu	AluJr
CAediting_1066972	chr15_84939222_+	SINE	Alu	AluJr
CAediting_1066973	chr15_84939226_+	SINE	Alu	AluJr
CAediting_1066974	chr15_84939245_+	SINE	Alu	AluJr
CAediting_1066975	chr15_84939248_+	SINE	Alu	AluJr
CAediting_1066976	chr15_84939250_+	SINE	Alu	AluJr
CAediting_1066977	chr15_84939269_+	SINE	Alu	AluJr
CAediting_1066978	chr15_84939295_+	SINE	Alu	AluJr
CAediting_1066979	chr15_84939856_+	SINE	Alu	AluJo
CAediting_1066980	chr15_84939894_+	SINE	Alu	AluJo
CAediting_1066981	chr15_84939924_+	SINE	Alu	AluJo
CAediting_1066982	chr15_84939925_+	SINE	Alu	AluJo
CAediting_1066983	chr15_84939953_+	SINE	Alu	AluJo
CAediting_1066984	chr15_84939963_+	SINE	Alu	AluJo
CAediting_1066985	chr15_84939967_+	SINE	Alu	AluJo
CAediting_1066986	chr15_84939981_+	SINE	Alu	AluJo
CAediting_1066987	chr15_84940011_+	SINE	Alu	AluJo
CAediting_1066988	chr15_84940030_+	SINE	Alu	AluJo
CAediting_1066989	chr15_84940037_+	SINE	Alu	AluJo
CAediting_1066990	chr15_84940038_+	SINE	Alu	AluJo
CAediting_1066991	chr15_84940048_+	SINE	Alu	AluJo
CAediting_1066992	chr15_84940049_+	SINE	Alu	AluJo
CAediting_1066993	chr15_84940050_+	SINE	Alu	AluJo
CAediting_1066994	chr15_84940062_+	SINE	Alu	AluJo
CAediting_1066995	chr15_84940063_+	SINE	Alu	AluJo
CAediting_1066996	chr15_84940066_+	SINE	Alu	AluJo
CAediting_1066997	chr15_84940089_+	SINE	Alu	AluJo
CAediting_1066998	chr15_84940090_+	SINE	Alu	AluJo
CAediting_1066999	chr15_84940102_+	SINE	Alu	AluJo
CAediting_1067000	chr15_84940104_+	SINE	Alu	AluJo
CAediting_1067001	chr15_84940108_+	SINE	Alu	AluJo
CAediting_1067002	chr15_84941404_+	SINE	Alu	AluY
CAediting_1067003	chr15_84941466_+	SINE	Alu	AluY
CAediting_1067004	chr15_84941467_+	SINE	Alu	AluY
CAediting_1067005	chr15_84941610_+	SINE	Alu	AluSz6
CAediting_1067006	chr15_84941628_+	SINE	Alu	AluSz6
CAediting_1067007	chr15_84941629_+	SINE	Alu	AluSz6
CAediting_1067008	chr15_84941635_+	SINE	Alu	AluSz6
CAediting_1067009	chr15_84941637_+	SINE	Alu	AluSz6
CAediting_1067010	chr15_84941683_+	SINE	Alu	AluSz6
CAediting_1067011	chr15_84941706_+	SINE	Alu	AluSz6
CAediting_1067012	chr15_84941716_+	SINE	Alu	AluSz6
CAediting_1067013	chr15_84941729_+	SINE	Alu	AluSz6
CAediting_1067014	chr15_84941738_+	SINE	Alu	AluSz6
CAediting_1067015	chr15_84941745_+	SINE	Alu	AluSz6
CAediting_1067016	chr15_84941751_+	SINE	Alu	AluSz6
CAediting_1067017	chr15_84941752_+	SINE	Alu	AluSz6
CAediting_1067018	chr15_84941774_+	SINE	Alu	AluSz6
CAediting_1067019	chr15_84941775_+	SINE	Alu	AluSz6
CAediting_1067020	chr15_84941781_+	SINE	Alu	AluSz6
CAediting_1067021	chr15_84941784_+	SINE	Alu	AluSz6
CAediting_1067022	chr15_84942923_+	SINE	Alu	AluSq2
CAediting_1067023	chr15_84942930_+	SINE	Alu	AluSq2
CAediting_1067024	chr15_84942935_+	SINE	Alu	AluSq2
CAediting_1067025	chr15_84942970_+	SINE	Alu	AluSq2
CAediting_1067026	chr15_84943001_+	SINE	Alu	AluSq2
CAediting_1067027	chr15_84943009_+	SINE	Alu	AluSq2
CAediting_1067028	chr15_84943026_+	SINE	Alu	AluSq2
CAediting_1067029	chr15_84943029_+	SINE	Alu	AluSq2
CAediting_1067030	chr15_84943039_+	SINE	Alu	AluSq2
CAediting_1067031	chr15_84943065_+	SINE	Alu	AluSq2
CAediting_1067032	chr15_84943107_+	SINE	Alu	AluSq2
CAediting_1067033	chr15_84943136_+	SINE	Alu	AluSq2
CAediting_1067034	chr15_84943174_+	SINE	Alu	AluSq2
CAediting_1067035	chr15_84943651_+	SINE	Alu	AluSz6
CAediting_1067036	chr15_84943674_+	SINE	Alu	AluSz6
CAediting_1067037	chr15_84943745_+	SINE	Alu	AluSz6
CAediting_1067038	chr15_84943750_+	SINE	Alu	AluSz6
CAediting_1067039	chr15_84943752_+	SINE	Alu	AluSz6
CAediting_1067040	chr15_84943786_+	SINE	Alu	AluSz6
CAediting_1067041	chr15_84943814_+	SINE	Alu	AluSz6

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RNA A-to-I editing events in the alternative splicing sites for SLC28A1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_1066870	chr15_84929401_+	84929400:84929408	5SS	2+0i	CAGGTATGA	9.46	CGGGTATGA	7.63

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000156222.10.SLC28A1.

Correlation between RNA A-to-I editing and PSI for ENSG00000156222.10.SLC28A1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SLC28A1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SLC28A1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SLC28A1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000156222.10	ENST00000538177	hsa-miR-320e	84945313	84945320	8mer-1a	84945302	84945320	157	-21.38
CAediting_1368054	chr19_46709310_-	ENSG00000156222.10	ENST00000286749	hsa-miR-320e	84945313	84945320	8mer-1a	84945302	84945320	157	-21.38
CAediting_468389	chr6_31355314_-	ENSG00000156222.10	ENST00000538177	hsa-miR-6891-5p	84945461	84945467	7mer-m8	84945450	84945468	153	-21.89
CAediting_468389	chr6_31355314_-	ENSG00000156222.10	ENST00000538177	hsa-miR-6891-5p	84945572	84945578	7mer-m8	84945561	84945579	140	-19.64
CAediting_468389	chr6_31355314_-	ENSG00000156222.10	ENST00000286749	hsa-miR-6891-5p	84945461	84945467	7mer-m8	84945450	84945468	153	-21.89
CAediting_468389	chr6_31355314_-	ENSG00000156222.10	ENST00000286749	hsa-miR-6891-5p	84945572	84945578	7mer-m8	84945561	84945579	140	-19.64

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_573000	chr7_92204081_-	ENSG00000156222.10	ENST00000338602	hsa-miR-1285-5p	84895571	84895576	6mer	84895557	84895577	143	-25.69
CAediting_573001	chr7_92204086_-	ENSG00000156222.10	ENST00000338602	hsa-miR-1285-5p	84895571	84895576	6mer	84895557	84895577	143	-25.69
CAediting_580943	chr7_100356700_+	ENSG00000156222.10	ENST00000538177	hsa-miR-6840-3p	84945519	84945525	7mer-m8	84945509	84945526	143	-22.24
CAediting_580943	chr7_100356700_+	ENSG00000156222.10	ENST00000286749	hsa-miR-6840-3p	84945519	84945525	7mer-m8	84945509	84945526	143	-22.24

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SLC28A1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SLC28A1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
KIRC	CAediting_1066841	chr15_84896774_+	1.13298426200705e-06	0.266513463197036	.	.	.	.
KIRC	CAediting_1066904	chr15_84936797_+	0.0111269241713442	0.267948162438842	.	.	.	.
KIRC	CAediting_1066929	chr15_84937002_+	0.031334551172084	0.298942523400933	.	.	.	.

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Relation with cancer stages for SLC28A1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
KIRC	pathologic_stage	CAediting_1066842	chr15_84896949_+	0.0483883123481113	0.21869636994245
KIRC	pathologic_stage	CAediting_1066939	chr15_84937836_+	0.0433913657074569	0.201431977144517
KIRC	pathologic_stage	CAediting_1066984	chr15_84939963_+	0.0185364447221914	0.22122158505115

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Relation with survival for SLC28A1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SLC28A1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SLC28A1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
SLC28A1	C0006142	Malignant neoplasm of breast	1	CTD_human
SLC28A1	C0678222	Breast Carcinoma	1	CTD_human
SLC28A1	C1257931	Mammary Neoplasms, Human	1	CTD_human
SLC28A1	C1458155	Mammary Neoplasms	1	CTD_human
SLC28A1	C4704874	Mammary Carcinoma, Human	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene