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Editing gene: COL23A1 (CAeditome ID:91522)

Gene summary for COL23A1

Gene summary

Gene information	Gene symbol	COL23A1
	Gene ID	91522
	Gene name	collagen type XXIII alpha 1 chain
	Synonyms	-
	Cytomap	5q35.3
	Type of gene	protein-coding
	Description	collagen alpha-1(XXIII) chaincollagen, type XXIII, alpha 1procollagen, type XXIII, alpha 1
	Modification date	20210518
	UniProtAcc	Q86Y22
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for COL23A1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000050767.14

RNA A-to-I editing events in Cancer.

CAediting_452723(178242940, -), CAediting_452724(178242967, -), CAediting_452725(178243050, -), CAediting_452726(178243066, -), CAediting_452727(178243068, -), CAediting_452728(178243078, -), CAediting_452729(178243081, -), CAediting_452730(178243082, -), CAediting_452731(178243103, -), CAediting_452732(178243108, -), CAediting_452733(178243114, -), CAediting_452734(178243143, -), CAediting_452735(178243184, -), CAediting_452736(178243188, -), CAediting_452737(178243231, -), CAediting_452738(178243237, -), CAediting_452739(178243243, -), CAediting_452740(178243245, -), CAediting_452741(178243267, -), CAediting_452742(178243320, -), CAediting_452743(178243375, -), CAediting_452744(178243378, -), CAediting_452745(178243387, -), CAediting_452746(178243404, -), CAediting_452747(178243651, -), CAediting_452748(178244027, -), CAediting_452749(178244052, -), CAediting_452750(178244069, -), CAediting_452751(178244077, -), CAediting_452752(178244099, -), CAediting_452753(178244104, -), CAediting_452754(178244108, -), CAediting_452755(178244112, -), CAediting_452756(178244118, -), CAediting_452757(178244140, -), CAediting_452758(178244144, -), CAediting_452759(178244217, -), CAediting_452760(178244218, -), CAediting_452761(178244256, -), CAediting_452762(178244261, -), CAediting_452763(178244262, -), CAediting_452764(178244268, -), CAediting_452765(178244284, -), CAediting_452766(178250726, -), CAediting_452767(178251115, -), CAediting_452768(178251151, -), CAediting_452769(178251161, -), CAediting_452770(178251201, -), CAediting_452771(178251202, -), CAediting_452772(178251294, -), CAediting_452773(178251907, -), CAediting_452774(178251982, -), CAediting_452775(178252197, -), CAediting_452776(178253521, -), CAediting_452777(178253621, -), CAediting_452778(178253647, -), CAediting_452779(178253682, -), CAediting_452780(178253919, -), CAediting_452781(178253929, -), CAediting_452782(178257979, -), CAediting_452783(178257997, -), CAediting_452784(178258005, -), CAediting_452785(178258074, -), CAediting_452786(178258126, -), CAediting_452787(178258148, -), CAediting_452788(178258153, -), CAediting_452789(178258207, -), CAediting_452790(178258212, -), CAediting_452791(178258507, -), CAediting_452792(178258534, -), CAediting_452793(178258667, -), CAediting_452794(178258730, -), CAediting_452795(178258732, -), CAediting_452796(178258816, -), CAediting_452797(178258827, -), CAediting_452798(178258833, -), CAediting_452799(178258855, -), CAediting_452800(178258859, -), CAediting_452801(178258993, -), CAediting_452802(178259049, -), CAediting_452803(178259054, -), CAediting_452804(178259055, -), CAediting_452805(178259081, -), CAediting_452806(178259164, -), CAediting_452807(178259167, -), CAediting_452808(178259169, -), CAediting_452809(178259171, -), CAediting_452810(178259180, -), CAediting_452811(178259216, -), CAediting_452812(178281930, -), CAediting_452813(178281936, -), CAediting_452814(178282008, -), CAediting_452815(178282917, -), CAediting_452816(178282928, -), CAediting_452817(178282939, -), CAediting_452818(178283003, -), CAediting_452819(178283009, -), CAediting_452820(178283041, -), CAediting_452821(178344452, -), CAediting_452822(178346366, -), CAediting_452823(178346382, -), CAediting_452824(178346430, -), CAediting_452825(178354301, -), CAediting_452826(178354311, -), CAediting_452827(178354316, -), CAediting_452828(178354317, -), CAediting_452829(178354347, -), CAediting_452830(178355049, -), CAediting_452831(178355050, -), CAediting_452832(178385142, -), CAediting_452833(178385153, -), CAediting_452834(178385167, -), CAediting_452835(178385175, -), CAediting_452836(178385280, -), CAediting_452837(178385297, -), CAediting_452838(178385306, -), CAediting_452839(178385308, -), CAediting_452840(178393733, -), CAediting_452841(178393747, -), CAediting_452842(178393764, -), CAediting_452843(178393774, -), CAediting_452844(178393780, -), CAediting_452845(178393843, -), CAediting_452846(178393844, -), CAediting_452847(178393845, -), CAediting_452848(178393873, -), CAediting_452849(178393899, -), CAediting_452850(178393906, -), CAediting_452851(178393913, -), CAediting_452852(178397875, -), CAediting_452853(178397905, -), CAediting_452854(178397911, -), CAediting_452855(178400734, -), CAediting_452856(178400735, -), CAediting_452857(178421769, -), CAediting_452858(178421838, -), CAediting_452859(178435211, -), CAediting_452860(178435231, -), CAediting_452861(178435250, -), CAediting_452862(178435269, -), CAediting_452863(178435278, -), CAediting_452864(178435296, -), CAediting_452865(178443725, -), CAediting_452866(178443731, -), CAediting_452867(178444149, -), CAediting_452868(178444154, -), CAediting_452869(178444192, -), CAediting_452870(178444578, -), CAediting_452871(178444603, -), CAediting_452872(178444629, -), CAediting_452873(178444674, -), CAediting_452874(178444744, -), CAediting_452875(178447258, -), CAediting_452876(178447282, -), CAediting_452877(178451501, -), CAediting_452878(178459728, -), CAediting_452879(178459736, -), CAediting_452880(178459740, -), CAediting_452881(178473377, -), CAediting_452882(178473433, -), CAediting_452883(178484000, -), CAediting_452884(178484043, -), CAediting_452885(178484056, -), CAediting_452886(178484060, -), CAediting_452887(178484069, -), CAediting_452888(178484096, -), CAediting_452889(178484101, -), CAediting_452890(178484102, -), CAediting_452891(178484103, -), CAediting_452892(178484104, -), CAediting_452893(178485462, -), CAediting_452894(178485516, -), CAediting_452895(178485528, -), CAediting_452896(178485590, -), CAediting_452897(178485601, -), CAediting_452898(178485610, -), CAediting_452899(178487444, -), CAediting_452900(178487457, -), CAediting_452901(178500510, -), CAediting_452902(178500545, -), CAediting_452903(178500569, -), CAediting_452904(178500574, -), CAediting_452905(178505469, -), CAediting_452906(178517658, -), CAediting_452907(178517670, -), CAediting_452908(178517673, -), CAediting_452909(178517690, -), CAediting_452910(178517700, -), CAediting_452911(178517741, -), CAediting_452912(178517855, -), CAediting_452913(178530226, -), CAediting_452914(178530298, -), CAediting_452915(178530314, -), CAediting_452916(178530340, -), CAediting_452917(178530350, -), CAediting_452918(178530367, -), CAediting_452919(178530386, -), CAediting_452920(178530458, -), CAediting_452921(178531028, -), CAediting_452922(178531032, -), CAediting_452923(178531050, -), CAediting_452924(178531062, -), CAediting_452925(178531064, -), CAediting_452926(178531074, -), CAediting_452927(178531090, -), CAediting_452928(178531148, -), CAediting_452929(178534613, -), CAediting_452930(178535056, -), CAediting_452931(178535068, -), CAediting_452932(178535124, -), CAediting_452933(178535137, -), CAediting_452934(178535152, -), CAediting_452935(178535167, -), CAediting_452936(178541492, -), CAediting_452937(178542129, -), CAediting_452938(178542304, -), CAediting_452939(178543219, -), CAediting_452940(178543236, -), CAediting_452941(178543246, -), CAediting_452942(178543280, -), CAediting_452943(178543285, -), CAediting_452944(178543310, -), CAediting_452945(178544978, -), CAediting_452946(178544981, -), CAediting_452947(178544982, -), CAediting_452948(178545078, -), CAediting_452949(178549581, -), CAediting_452950(178549683, -), CAediting_452951(178549693, -), CAediting_452952(178570205, -), CAediting_452953(178570386, -), CAediting_452954(178570390, -), CAediting_452955(178579565, -), CAediting_452956(178579591, -), CAediting_452957(178580927, -),

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RNA editing positional annotations for COL23A1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_452723	chr5_178242940_-	intronic
CAediting_452724	chr5_178242967_-	intronic
CAediting_452725	chr5_178243050_-	intronic
CAediting_452726	chr5_178243066_-	intronic
CAediting_452727	chr5_178243068_-	intronic
CAediting_452728	chr5_178243078_-	intronic
CAediting_452729	chr5_178243081_-	intronic
CAediting_452730	chr5_178243082_-	intronic
CAediting_452731	chr5_178243103_-	intronic
CAediting_452732	chr5_178243108_-	intronic
CAediting_452733	chr5_178243114_-	intronic
CAediting_452734	chr5_178243143_-	intronic
CAediting_452735	chr5_178243184_-	intronic
CAediting_452736	chr5_178243188_-	intronic
CAediting_452737	chr5_178243231_-	intronic
CAediting_452738	chr5_178243237_-	intronic
CAediting_452739	chr5_178243243_-	intronic
CAediting_452740	chr5_178243245_-	intronic
CAediting_452741	chr5_178243267_-	intronic
CAediting_452742	chr5_178243320_-	intronic
CAediting_452743	chr5_178243375_-	intronic
CAediting_452744	chr5_178243378_-	intronic
CAediting_452745	chr5_178243387_-	intronic
CAediting_452746	chr5_178243404_-	intronic
CAediting_452747	chr5_178243651_-	intronic
CAediting_452748	chr5_178244027_-	intronic
CAediting_452749	chr5_178244052_-	intronic
CAediting_452750	chr5_178244069_-	intronic
CAediting_452751	chr5_178244077_-	intronic
CAediting_452752	chr5_178244099_-	intronic
CAediting_452753	chr5_178244104_-	intronic
CAediting_452754	chr5_178244108_-	intronic
CAediting_452755	chr5_178244112_-	intronic
CAediting_452756	chr5_178244118_-	intronic
CAediting_452757	chr5_178244140_-	intronic
CAediting_452758	chr5_178244144_-	intronic
CAediting_452759	chr5_178244217_-	intronic
CAediting_452760	chr5_178244218_-	intronic
CAediting_452761	chr5_178244256_-	intronic
CAediting_452762	chr5_178244261_-	intronic
CAediting_452763	chr5_178244262_-	intronic
CAediting_452764	chr5_178244268_-	intronic
CAediting_452765	chr5_178244284_-	intronic
CAediting_452766	chr5_178250726_-	intronic
CAediting_452767	chr5_178251115_-	intronic
CAediting_452768	chr5_178251151_-	intronic
CAediting_452769	chr5_178251161_-	intronic
CAediting_452770	chr5_178251201_-	intronic
CAediting_452771	chr5_178251202_-	intronic
CAediting_452772	chr5_178251294_-	intronic
CAediting_452773	chr5_178251907_-	intronic
CAediting_452774	chr5_178251982_-	intronic
CAediting_452775	chr5_178252197_-	intronic
CAediting_452776	chr5_178253521_-	intronic
CAediting_452777	chr5_178253621_-	intronic
CAediting_452778	chr5_178253647_-	intronic
CAediting_452779	chr5_178253682_-	intronic
CAediting_452780	chr5_178253919_-	intronic
CAediting_452781	chr5_178253929_-	intronic
CAediting_452782	chr5_178257979_-	intronic
CAediting_452783	chr5_178257997_-	intronic
CAediting_452784	chr5_178258005_-	intronic
CAediting_452785	chr5_178258074_-	intronic
CAediting_452786	chr5_178258126_-	intronic
CAediting_452787	chr5_178258148_-	intronic
CAediting_452788	chr5_178258153_-	intronic
CAediting_452789	chr5_178258207_-	intronic
CAediting_452790	chr5_178258212_-	intronic
CAediting_452791	chr5_178258507_-	intronic
CAediting_452792	chr5_178258534_-	intronic
CAediting_452793	chr5_178258667_-	intronic
CAediting_452794	chr5_178258730_-	intronic
CAediting_452795	chr5_178258732_-	intronic
CAediting_452796	chr5_178258816_-	intronic
CAediting_452797	chr5_178258827_-	intronic
CAediting_452798	chr5_178258833_-	intronic
CAediting_452799	chr5_178258855_-	intronic
CAediting_452800	chr5_178258859_-	intronic
CAediting_452801	chr5_178258993_-	intronic
CAediting_452802	chr5_178259049_-	intronic
CAediting_452803	chr5_178259054_-	intronic
CAediting_452804	chr5_178259055_-	intronic
CAediting_452805	chr5_178259081_-	intronic
CAediting_452806	chr5_178259164_-	intronic
CAediting_452807	chr5_178259167_-	intronic
CAediting_452808	chr5_178259169_-	intronic
CAediting_452809	chr5_178259171_-	intronic
CAediting_452810	chr5_178259180_-	intronic
CAediting_452811	chr5_178259216_-	intronic
CAediting_452812	chr5_178281930_-	intronic
CAediting_452813	chr5_178281936_-	intronic
CAediting_452814	chr5_178282008_-	intronic
CAediting_452815	chr5_178282917_-	intronic
CAediting_452816	chr5_178282928_-	intronic
CAediting_452817	chr5_178282939_-	intronic
CAediting_452818	chr5_178283003_-	intronic
CAediting_452819	chr5_178283009_-	intronic
CAediting_452820	chr5_178283041_-	intronic
CAediting_452821	chr5_178344452_-	intronic
CAediting_452822	chr5_178346366_-	intronic
CAediting_452823	chr5_178346382_-	intronic
CAediting_452824	chr5_178346430_-	intronic
CAediting_452825	chr5_178354301_-	intronic
CAediting_452826	chr5_178354311_-	intronic
CAediting_452827	chr5_178354316_-	intronic
CAediting_452828	chr5_178354317_-	intronic
CAediting_452829	chr5_178354347_-	intronic
CAediting_452830	chr5_178355049_-	intronic
CAediting_452831	chr5_178355050_-	intronic
CAediting_452832	chr5_178385142_-	intronic
CAediting_452833	chr5_178385153_-	intronic
CAediting_452834	chr5_178385167_-	intronic
CAediting_452835	chr5_178385175_-	intronic
CAediting_452836	chr5_178385280_-	intronic
CAediting_452837	chr5_178385297_-	intronic
CAediting_452838	chr5_178385306_-	intronic
CAediting_452839	chr5_178385308_-	intronic
CAediting_452840	chr5_178393733_-	intronic
CAediting_452841	chr5_178393747_-	intronic
CAediting_452842	chr5_178393764_-	intronic
CAediting_452843	chr5_178393774_-	intronic
CAediting_452844	chr5_178393780_-	intronic
CAediting_452845	chr5_178393843_-	intronic
CAediting_452846	chr5_178393844_-	intronic
CAediting_452847	chr5_178393845_-	intronic
CAediting_452848	chr5_178393873_-	intronic
CAediting_452849	chr5_178393899_-	intronic
CAediting_452850	chr5_178393906_-	intronic
CAediting_452851	chr5_178393913_-	intronic
CAediting_452852	chr5_178397875_-	intronic
CAediting_452853	chr5_178397905_-	intronic
CAediting_452854	chr5_178397911_-	intronic
CAediting_452855	chr5_178400734_-	intronic
CAediting_452856	chr5_178400735_-	intronic
CAediting_452857	chr5_178421769_-	intronic
CAediting_452858	chr5_178421838_-	intronic
CAediting_452859	chr5_178435211_-	intronic
CAediting_452860	chr5_178435231_-	intronic
CAediting_452861	chr5_178435250_-	intronic
CAediting_452862	chr5_178435269_-	intronic
CAediting_452863	chr5_178435278_-	intronic
CAediting_452864	chr5_178435296_-	intronic
CAediting_452865	chr5_178443725_-	intronic
CAediting_452866	chr5_178443731_-	intronic
CAediting_452867	chr5_178444149_-	intronic
CAediting_452868	chr5_178444154_-	intronic
CAediting_452869	chr5_178444192_-	intronic
CAediting_452870	chr5_178444578_-	intronic
CAediting_452871	chr5_178444603_-	intronic
CAediting_452872	chr5_178444629_-	intronic
CAediting_452873	chr5_178444674_-	intronic
CAediting_452874	chr5_178444744_-	intronic
CAediting_452875	chr5_178447258_-	intronic
CAediting_452876	chr5_178447282_-	intronic
CAediting_452877	chr5_178451501_-	intronic
CAediting_452878	chr5_178459728_-	intronic
CAediting_452879	chr5_178459736_-	intronic
CAediting_452880	chr5_178459740_-	intronic
CAediting_452881	chr5_178473377_-	intronic
CAediting_452882	chr5_178473433_-	intronic
CAediting_452883	chr5_178484000_-	intronic
CAediting_452884	chr5_178484043_-	intronic
CAediting_452885	chr5_178484056_-	intronic
CAediting_452886	chr5_178484060_-	intronic
CAediting_452887	chr5_178484069_-	intronic
CAediting_452888	chr5_178484096_-	intronic
CAediting_452889	chr5_178484101_-	intronic
CAediting_452890	chr5_178484102_-	intronic
CAediting_452891	chr5_178484103_-	intronic
CAediting_452892	chr5_178484104_-	intronic
CAediting_452893	chr5_178485462_-	intronic
CAediting_452894	chr5_178485516_-	intronic
CAediting_452895	chr5_178485528_-	intronic
CAediting_452896	chr5_178485590_-	intronic
CAediting_452897	chr5_178485601_-	intronic
CAediting_452898	chr5_178485610_-	intronic
CAediting_452899	chr5_178487444_-	intronic
CAediting_452900	chr5_178487457_-	intronic
CAediting_452901	chr5_178500510_-	intronic
CAediting_452902	chr5_178500545_-	intronic
CAediting_452903	chr5_178500569_-	intronic
CAediting_452904	chr5_178500574_-	intronic
CAediting_452905	chr5_178505469_-	intronic
CAediting_452906	chr5_178517658_-	intronic
CAediting_452907	chr5_178517670_-	intronic
CAediting_452908	chr5_178517673_-	intronic
CAediting_452909	chr5_178517690_-	intronic
CAediting_452910	chr5_178517700_-	intronic
CAediting_452911	chr5_178517741_-	intronic
CAediting_452912	chr5_178517855_-	intronic
CAediting_452913	chr5_178530226_-	ncRNA_intronic
CAediting_452914	chr5_178530298_-	ncRNA_intronic
CAediting_452915	chr5_178530314_-	ncRNA_intronic
CAediting_452916	chr5_178530340_-	ncRNA_intronic
CAediting_452917	chr5_178530350_-	ncRNA_intronic
CAediting_452918	chr5_178530367_-	ncRNA_intronic
CAediting_452919	chr5_178530386_-	ncRNA_intronic
CAediting_452920	chr5_178530458_-	ncRNA_intronic
CAediting_452921	chr5_178531028_-	ncRNA_intronic
CAediting_452922	chr5_178531032_-	ncRNA_intronic
CAediting_452923	chr5_178531050_-	ncRNA_intronic
CAediting_452924	chr5_178531062_-	ncRNA_intronic
CAediting_452925	chr5_178531064_-	ncRNA_intronic
CAediting_452926	chr5_178531074_-	ncRNA_intronic
CAediting_452927	chr5_178531090_-	ncRNA_intronic
CAediting_452928	chr5_178531148_-	ncRNA_intronic
CAediting_452929	chr5_178534613_-	ncRNA_intronic
CAediting_452930	chr5_178535056_-	ncRNA_intronic
CAediting_452931	chr5_178535068_-	ncRNA_intronic
CAediting_452932	chr5_178535124_-	ncRNA_intronic
CAediting_452933	chr5_178535137_-	ncRNA_intronic
CAediting_452934	chr5_178535152_-	ncRNA_intronic
CAediting_452935	chr5_178535167_-	ncRNA_intronic
CAediting_452936	chr5_178541492_-	ncRNA_intronic
CAediting_452937	chr5_178542129_-	ncRNA_intronic
CAediting_452938	chr5_178542304_-	ncRNA_intronic
CAediting_452939	chr5_178543219_-	ncRNA_intronic
CAediting_452940	chr5_178543236_-	ncRNA_intronic
CAediting_452941	chr5_178543246_-	ncRNA_intronic
CAediting_452942	chr5_178543280_-	ncRNA_intronic
CAediting_452943	chr5_178543285_-	ncRNA_intronic
CAediting_452944	chr5_178543310_-	ncRNA_intronic
CAediting_452945	chr5_178544978_-	ncRNA_intronic
CAediting_452946	chr5_178544981_-	ncRNA_intronic
CAediting_452947	chr5_178544982_-	ncRNA_intronic
CAediting_452948	chr5_178545078_-	ncRNA_intronic
CAediting_452949	chr5_178549581_-	ncRNA_intronic
CAediting_452950	chr5_178549683_-	ncRNA_intronic
CAediting_452951	chr5_178549693_-	ncRNA_intronic
CAediting_452952	chr5_178570205_-	intronic
CAediting_452953	chr5_178570386_-	intronic
CAediting_452954	chr5_178570390_-	intronic
CAediting_452955	chr5_178579565_-	intronic
CAediting_452956	chr5_178579591_-	intronic
CAediting_452957	chr5_178580927_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_452723	chr5_178242940_-	SINE	Alu	AluSx
CAediting_452724	chr5_178242967_-	SINE	Alu	AluSx
CAediting_452725	chr5_178243050_-	SINE	Alu	AluSx
CAediting_452726	chr5_178243066_-	SINE	Alu	AluSx
CAediting_452727	chr5_178243068_-	SINE	Alu	AluSx
CAediting_452728	chr5_178243078_-	SINE	Alu	AluSx
CAediting_452729	chr5_178243081_-	SINE	Alu	AluSx
CAediting_452730	chr5_178243082_-	SINE	Alu	AluSx
CAediting_452731	chr5_178243103_-	SINE	Alu	AluSx
CAediting_452732	chr5_178243108_-	SINE	Alu	AluSx
CAediting_452733	chr5_178243114_-	SINE	Alu	AluSx
CAediting_452734	chr5_178243143_-	SINE	Alu	AluSx
CAediting_452735	chr5_178243184_-	SINE	Alu	AluSx
CAediting_452736	chr5_178243188_-	SINE	Alu	AluSx
CAediting_452737	chr5_178243231_-	SINE	Alu	AluSz
CAediting_452738	chr5_178243237_-	SINE	Alu	AluSz
CAediting_452739	chr5_178243243_-	SINE	Alu	AluSz
CAediting_452740	chr5_178243245_-	SINE	Alu	AluSz
CAediting_452741	chr5_178243267_-	SINE	Alu	AluSz
CAediting_452742	chr5_178243320_-	SINE	Alu	AluSz
CAediting_452743	chr5_178243375_-	SINE	Alu	AluSz
CAediting_452744	chr5_178243378_-	SINE	Alu	AluSz
CAediting_452745	chr5_178243387_-	SINE	Alu	AluSz
CAediting_452746	chr5_178243404_-	SINE	Alu	AluSz
CAediting_452748	chr5_178244027_-	SINE	Alu	AluY
CAediting_452749	chr5_178244052_-	SINE	Alu	AluY
CAediting_452750	chr5_178244069_-	SINE	Alu	AluY
CAediting_452751	chr5_178244077_-	SINE	Alu	AluY
CAediting_452752	chr5_178244099_-	SINE	Alu	AluY
CAediting_452753	chr5_178244104_-	SINE	Alu	AluY
CAediting_452754	chr5_178244108_-	SINE	Alu	AluY
CAediting_452755	chr5_178244112_-	SINE	Alu	AluY
CAediting_452756	chr5_178244118_-	SINE	Alu	AluY
CAediting_452757	chr5_178244140_-	SINE	Alu	AluY
CAediting_452758	chr5_178244144_-	SINE	Alu	AluY
CAediting_452759	chr5_178244217_-	SINE	Alu	AluY
CAediting_452760	chr5_178244218_-	SINE	Alu	AluY
CAediting_452761	chr5_178244256_-	SINE	Alu	AluY
CAediting_452762	chr5_178244261_-	SINE	Alu	AluY
CAediting_452763	chr5_178244262_-	SINE	Alu	AluY
CAediting_452764	chr5_178244268_-	SINE	Alu	AluY
CAediting_452765	chr5_178244284_-	SINE	Alu	AluY
CAediting_452766	chr5_178250726_-	SINE	Alu	AluSx
CAediting_452767	chr5_178251115_-	SINE	Alu	AluSx4
CAediting_452768	chr5_178251151_-	SINE	Alu	AluSx4
CAediting_452769	chr5_178251161_-	SINE	Alu	AluSx4
CAediting_452770	chr5_178251201_-	SINE	Alu	AluSx4
CAediting_452771	chr5_178251202_-	SINE	Alu	AluSx4
CAediting_452772	chr5_178251294_-	SINE	Alu	AluSx4
CAediting_452773	chr5_178251907_-	SINE	Alu	AluSq
CAediting_452774	chr5_178251982_-	SINE	Alu	AluSq
CAediting_452775	chr5_178252197_-	SINE	Alu	AluSq
CAediting_452776	chr5_178253521_-	SINE	Alu	AluSg
CAediting_452777	chr5_178253621_-	SINE	Alu	AluSg
CAediting_452778	chr5_178253647_-	SINE	Alu	AluSg
CAediting_452779	chr5_178253682_-	SINE	Alu	AluSg
CAediting_452780	chr5_178253919_-	SINE	Alu	AluSq2
CAediting_452781	chr5_178253929_-	SINE	Alu	AluSq2
CAediting_452782	chr5_178257979_-	SINE	Alu	AluJo
CAediting_452783	chr5_178257997_-	SINE	Alu	AluJo
CAediting_452784	chr5_178258005_-	SINE	Alu	AluJo
CAediting_452785	chr5_178258074_-	SINE	Alu	AluJo
CAediting_452786	chr5_178258126_-	SINE	Alu	AluJo
CAediting_452787	chr5_178258148_-	SINE	Alu	AluJo
CAediting_452788	chr5_178258153_-	SINE	Alu	AluJo
CAediting_452789	chr5_178258207_-	SINE	Alu	AluJo
CAediting_452790	chr5_178258212_-	SINE	Alu	AluJo
CAediting_452791	chr5_178258507_-	SINE	Alu	AluY
CAediting_452792	chr5_178258534_-	SINE	Alu	AluY
CAediting_452793	chr5_178258667_-	SINE	Alu	AluY
CAediting_452794	chr5_178258730_-	SINE	Alu	AluJr
CAediting_452795	chr5_178258732_-	SINE	Alu	AluJr
CAediting_452796	chr5_178258816_-	SINE	Alu	AluJr
CAediting_452797	chr5_178258827_-	SINE	Alu	AluJr
CAediting_452798	chr5_178258833_-	SINE	Alu	AluJr
CAediting_452799	chr5_178258855_-	SINE	Alu	AluJr
CAediting_452800	chr5_178258859_-	SINE	Alu	AluJr
CAediting_452801	chr5_178258993_-	SINE	Alu	AluSx1
CAediting_452802	chr5_178259049_-	SINE	Alu	AluSx1
CAediting_452803	chr5_178259054_-	SINE	Alu	AluSx1
CAediting_452804	chr5_178259055_-	SINE	Alu	AluSx1
CAediting_452805	chr5_178259081_-	SINE	Alu	AluSx1
CAediting_452806	chr5_178259164_-	SINE	Alu	AluSx1
CAediting_452807	chr5_178259167_-	SINE	Alu	AluSx1
CAediting_452808	chr5_178259169_-	SINE	Alu	AluSx1
CAediting_452809	chr5_178259171_-	SINE	Alu	AluSx1
CAediting_452810	chr5_178259180_-	SINE	Alu	AluSx1
CAediting_452811	chr5_178259216_-	SINE	Alu	AluSx1
CAediting_452812	chr5_178281930_-	SINE	Alu	AluSz6
CAediting_452813	chr5_178281936_-	SINE	Alu	AluSz6
CAediting_452814	chr5_178282008_-	SINE	Alu	AluSz6
CAediting_452815	chr5_178282917_-	SINE	Alu	AluSz
CAediting_452816	chr5_178282928_-	SINE	Alu	AluSz
CAediting_452817	chr5_178282939_-	SINE	Alu	AluSz
CAediting_452818	chr5_178283003_-	SINE	Alu	AluSz
CAediting_452819	chr5_178283009_-	SINE	Alu	AluSz
CAediting_452820	chr5_178283041_-	SINE	Alu	AluSz
CAediting_452821	chr5_178344452_-	SINE	Alu	AluSx
CAediting_452822	chr5_178346366_-	SINE	Alu	AluSx1
CAediting_452823	chr5_178346382_-	SINE	Alu	AluSx1
CAediting_452824	chr5_178346430_-	SINE	Alu	AluSx1
CAediting_452825	chr5_178354301_-	SINE	Alu	AluJo
CAediting_452826	chr5_178354311_-	SINE	Alu	AluJo
CAediting_452827	chr5_178354316_-	SINE	Alu	AluJo
CAediting_452828	chr5_178354317_-	SINE	Alu	AluJo
CAediting_452829	chr5_178354347_-	SINE	Alu	AluJo
CAediting_452830	chr5_178355049_-	SINE	Alu	AluSx3
CAediting_452831	chr5_178355050_-	SINE	Alu	AluSx3
CAediting_452840	chr5_178393733_-	SINE	Alu	AluSz
CAediting_452841	chr5_178393747_-	SINE	Alu	AluSz
CAediting_452842	chr5_178393764_-	SINE	Alu	AluSz
CAediting_452843	chr5_178393774_-	SINE	Alu	AluSz
CAediting_452844	chr5_178393780_-	SINE	Alu	AluSz
CAediting_452845	chr5_178393843_-	SINE	Alu	AluSz
CAediting_452846	chr5_178393844_-	SINE	Alu	AluSz
CAediting_452847	chr5_178393845_-	SINE	Alu	AluSz
CAediting_452848	chr5_178393873_-	SINE	Alu	AluSz
CAediting_452849	chr5_178393899_-	SINE	Alu	AluSz
CAediting_452850	chr5_178393906_-	SINE	Alu	AluSz
CAediting_452851	chr5_178393913_-	SINE	Alu	AluSz
CAediting_452852	chr5_178397875_-	SINE	Alu	AluSc
CAediting_452853	chr5_178397905_-	SINE	Alu	AluSc
CAediting_452854	chr5_178397911_-	SINE	Alu	AluSc
CAediting_452855	chr5_178400734_-	SINE	Alu	AluSx1
CAediting_452856	chr5_178400735_-	SINE	Alu	AluSx1
CAediting_452857	chr5_178421769_-	SINE	Alu	AluSq2
CAediting_452858	chr5_178421838_-	SINE	Alu	AluSq2
CAediting_452865	chr5_178443725_-	SINE	Alu	AluSz
CAediting_452866	chr5_178443731_-	SINE	Alu	AluSz
CAediting_452867	chr5_178444149_-	SINE	Alu	AluJb
CAediting_452868	chr5_178444154_-	SINE	Alu	AluJb
CAediting_452869	chr5_178444192_-	SINE	Alu	AluJb
CAediting_452870	chr5_178444578_-	SINE	Alu	AluSx
CAediting_452871	chr5_178444603_-	SINE	Alu	AluSx
CAediting_452872	chr5_178444629_-	SINE	Alu	AluSx
CAediting_452873	chr5_178444674_-	SINE	Alu	AluSx
CAediting_452874	chr5_178444744_-	SINE	Alu	AluSx
CAediting_452875	chr5_178447258_-	SINE	Alu	AluSz
CAediting_452876	chr5_178447282_-	SINE	Alu	AluSz
CAediting_452877	chr5_178451501_-	SINE	Alu	AluSx1
CAediting_452878	chr5_178459728_-	SINE	Alu	AluSx
CAediting_452879	chr5_178459736_-	SINE	Alu	AluSx
CAediting_452880	chr5_178459740_-	SINE	Alu	AluSx
CAediting_452881	chr5_178473377_-	SINE	Alu	AluJb
CAediting_452882	chr5_178473433_-	SINE	Alu	AluJb
CAediting_452883	chr5_178484000_-	SINE	Alu	AluSq2
CAediting_452884	chr5_178484043_-	SINE	Alu	AluSq2
CAediting_452885	chr5_178484056_-	SINE	Alu	AluSq2
CAediting_452886	chr5_178484060_-	SINE	Alu	AluSq2
CAediting_452887	chr5_178484069_-	SINE	Alu	AluSq2
CAediting_452888	chr5_178484096_-	SINE	Alu	AluSq2
CAediting_452889	chr5_178484101_-	SINE	Alu	AluSq2
CAediting_452890	chr5_178484102_-	SINE	Alu	AluSq2
CAediting_452891	chr5_178484103_-	SINE	Alu	AluSq2
CAediting_452892	chr5_178484104_-	SINE	Alu	AluSq2
CAediting_452893	chr5_178485462_-	SINE	Alu	AluJo
CAediting_452894	chr5_178485516_-	SINE	Alu	AluSx
CAediting_452895	chr5_178485528_-	SINE	Alu	AluSx
CAediting_452896	chr5_178485590_-	SINE	Alu	AluSx
CAediting_452897	chr5_178485601_-	SINE	Alu	AluSx
CAediting_452898	chr5_178485610_-	SINE	Alu	AluSx
CAediting_452899	chr5_178487444_-	SINE	Alu	AluSq
CAediting_452900	chr5_178487457_-	SINE	Alu	AluSq
CAediting_452901	chr5_178500510_-	SINE	Alu	AluJr
CAediting_452902	chr5_178500545_-	SINE	Alu	AluJr
CAediting_452903	chr5_178500569_-	SINE	Alu	AluJr
CAediting_452904	chr5_178500574_-	SINE	Alu	AluJr
CAediting_452905	chr5_178505469_-	SINE	Alu	AluSx
CAediting_452906	chr5_178517658_-	SINE	Alu	AluSc5
CAediting_452907	chr5_178517670_-	SINE	Alu	AluSc5
CAediting_452908	chr5_178517673_-	SINE	Alu	AluSc5
CAediting_452909	chr5_178517690_-	SINE	Alu	AluSc5
CAediting_452910	chr5_178517700_-	SINE	Alu	AluSc5
CAediting_452911	chr5_178517741_-	SINE	Alu	AluSc5
CAediting_452912	chr5_178517855_-	SINE	Alu	AluSc5
CAediting_452913	chr5_178530226_-	SINE	Alu	AluJb
CAediting_452914	chr5_178530298_-	SINE	Alu	AluJb
CAediting_452915	chr5_178530314_-	SINE	Alu	AluJb
CAediting_452916	chr5_178530340_-	SINE	Alu	AluJb
CAediting_452917	chr5_178530350_-	SINE	Alu	AluJb
CAediting_452918	chr5_178530367_-	SINE	Alu	AluJb
CAediting_452919	chr5_178530386_-	SINE	Alu	AluJb
CAediting_452920	chr5_178530458_-	SINE	Alu	AluJb
CAediting_452921	chr5_178531028_-	SINE	Alu	AluSp
CAediting_452922	chr5_178531032_-	SINE	Alu	AluSp
CAediting_452923	chr5_178531050_-	SINE	Alu	AluSp
CAediting_452924	chr5_178531062_-	SINE	Alu	AluSp
CAediting_452925	chr5_178531064_-	SINE	Alu	AluSp
CAediting_452926	chr5_178531074_-	SINE	Alu	AluSp
CAediting_452927	chr5_178531090_-	SINE	Alu	AluSp
CAediting_452928	chr5_178531148_-	SINE	Alu	AluSp
CAediting_452929	chr5_178534613_-	SINE	Alu	AluSx3
CAediting_452930	chr5_178535056_-	SINE	Alu	AluSq2
CAediting_452931	chr5_178535068_-	SINE	Alu	AluSq2
CAediting_452932	chr5_178535124_-	SINE	Alu	AluSq2
CAediting_452933	chr5_178535137_-	SINE	Alu	AluSq2
CAediting_452934	chr5_178535152_-	SINE	Alu	AluSq2
CAediting_452935	chr5_178535167_-	SINE	Alu	AluSq2
CAediting_452936	chr5_178541492_-	SINE	Alu	AluSx1
CAediting_452937	chr5_178542129_-	SINE	Alu	AluSz6
CAediting_452938	chr5_178542304_-	SINE	Alu	AluSz6
CAediting_452939	chr5_178543219_-	SINE	Alu	AluSq2
CAediting_452940	chr5_178543236_-	SINE	Alu	AluSq2
CAediting_452941	chr5_178543246_-	SINE	Alu	AluSq2
CAediting_452942	chr5_178543280_-	SINE	Alu	AluSq2
CAediting_452943	chr5_178543285_-	SINE	Alu	AluSq2
CAediting_452944	chr5_178543310_-	SINE	Alu	AluSq2
CAediting_452945	chr5_178544978_-	SINE	Alu	AluJo
CAediting_452946	chr5_178544981_-	SINE	Alu	AluJo
CAediting_452947	chr5_178544982_-	SINE	Alu	AluJo
CAediting_452948	chr5_178545078_-	SINE	Alu	AluJo
CAediting_452949	chr5_178549581_-	SINE	Alu	AluSq2
CAediting_452950	chr5_178549683_-	SINE	Alu	AluSq2
CAediting_452951	chr5_178549693_-	SINE	Alu	AluSq2
CAediting_452952	chr5_178570205_-	SINE	Alu	AluJb
CAediting_452953	chr5_178570386_-	SINE	Alu	AluJb
CAediting_452954	chr5_178570390_-	SINE	Alu	AluJb
CAediting_452955	chr5_178579565_-	SINE	Alu	AluSg4
CAediting_452956	chr5_178579591_-	SINE	Alu	AluSg4
CAediting_452957	chr5_178580927_-	SINE	Alu	AluJr

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RNA A-to-I editing events in the alternative splicing sites for COL23A1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_452785	chr5_178258074_-	178258072:178258094	3SS	1+0i	TTATTTTCTGGTTTTTGTAGAGA	8.2	TTATTTTCTGGTTTTTGTAGGGA	9.33

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000050767.14.COL23A1.

Correlation between RNA A-to-I editing and PSI for ENSG00000050767.14.COL23A1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for COL23A1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for COL23A1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for COL23A1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000050767.14	ENST00000390654	hsa-miR-320e	178237690	178237696	7mer-m8	178237689	178237708	155	-17.84
CAediting_1368054	chr19_46709310_-	ENSG00000050767.14	ENST00000390654	hsa-miR-320e	178238017	178238023	7mer-m8	178238016	178238033	155	-19.22
CAediting_228905	chr2_188297554_+	ENSG00000050767.14	ENST00000390654	hsa-miR-561-3p	178238328	178238334	7mer-m8	178238327	178238348	140	-10.96

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for COL23A1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for COL23A1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for COL23A1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for COL23A1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for COL23A1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for COL23A1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
COL23A1	C0032927	Precancerous Conditions	1	CTD_human
COL23A1	C0282313	Condition, Preneoplastic	1	CTD_human
COL23A1	C2931456	Prostate cancer, familial	1	CTD_human
COL23A1	C4722327	PROSTATE CANCER, HEREDITARY, 1	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene