![]() |
||||||
|
![]() | |
![]() | |
![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
![]() | |
![]() | |
![]() | The effects of the RNA editing to the stability of the RNA structures |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Editing gene: PDCD5 (CAeditome ID:9141) |
Gene summary for PDCD5 |
![]() |
Gene information | Gene symbol | PDCD5 | Gene ID | 9141 |
Gene name | programmed cell death 5 | |
Synonyms | TFAR19 | |
Cytomap | 19q13.11 | |
Type of gene | protein-coding | |
Description | programmed cell death protein 5TF-1 cell apoptosis-related protein 19TF1 cell apoptosis-related gene 19TFAR19 novel apoptosis-related | |
Modification date | 20210518 | |
UniProtAcc | O14737 | |
Context | - 32494163(MicroRNA-766 Promotes The Proliferation, Migration And Invasion, And Inhibits The Apoptosis Of Cutaneous Squamous Cell Carcinoma Cells By Targeting PDCD5) |
![]() |
Gene | GO ID | GO term | PubMed ID |
PDCD5 | GO:0008201 | Programmed cell death protein 5 | 17165023 |
PDCD5 | GO:0010698 | Programmed cell death protein 5 | 24012345 |
PDCD5 | GO:0010628 | Programmed cell death protein 5 | 24012345 |
PDCD5 | GO:0071560 | Programmed cell death protein 5 | 24012345 |
PDCD5 | GO:0005634 | Programmed cell death protein 5 | 24012345 |
Top |
RNA A-to-I events for PDCD5 |
![]() |
![]() |
![]() |
![]() |
CAediting_1333136(32583364, +), CAediting_1333137(32583397, +), CAediting_1333138(32583503, +), CAediting_1333139(32583504, +), CAediting_1333140(32583505, +), CAediting_1333141(32583517, +), CAediting_1333142(32583518, +), CAediting_1333143(32583651, +), CAediting_1333144(32583694, +), CAediting_1333145(32583698, +), CAediting_1333146(32583699, +), CAediting_1333147(32583706, +), CAediting_1333148(32583716, +), CAediting_1333149(32583720, +), CAediting_1333150(32583723, +), CAediting_1333151(32583729, +), CAediting_1333152(32583736, +), CAediting_1333153(32583738, +), CAediting_1333154(32583739, +), CAediting_1333155(32583742, +), CAediting_1333156(32583747, +), CAediting_1333157(32583781, +), CAediting_1333158(32583793, +), CAediting_1333159(32583856, +), CAediting_1333160(32583857, +), CAediting_1333161(32583875, +), CAediting_1333162(32583882, +), CAediting_1333163(32583893, +), CAediting_1333164(32583925, +), CAediting_1333165(32583931, +), CAediting_1333166(32583932, +), CAediting_1333167(32583957, +), CAediting_1333168(32583958, +), CAediting_1333169(32583961, +), CAediting_1333170(32583973, +), CAediting_1333171(32584079, +), |
Top |
RNA editing positional annotations for PDCD5 using Annovar |
![]() |
CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
![]() |
CAeditome ID | Position | Variant type |
CAediting_1333136 | chr19_32583364_+ | intronic |
CAediting_1333137 | chr19_32583397_+ | intronic |
CAediting_1333138 | chr19_32583503_+ | intronic |
CAediting_1333139 | chr19_32583504_+ | intronic |
CAediting_1333140 | chr19_32583505_+ | intronic |
CAediting_1333141 | chr19_32583517_+ | intronic |
CAediting_1333142 | chr19_32583518_+ | intronic |
CAediting_1333143 | chr19_32583651_+ | intronic |
CAediting_1333144 | chr19_32583694_+ | intronic |
CAediting_1333145 | chr19_32583698_+ | intronic |
CAediting_1333146 | chr19_32583699_+ | intronic |
CAediting_1333147 | chr19_32583706_+ | intronic |
CAediting_1333148 | chr19_32583716_+ | intronic |
CAediting_1333149 | chr19_32583720_+ | intronic |
CAediting_1333150 | chr19_32583723_+ | intronic |
CAediting_1333151 | chr19_32583729_+ | intronic |
CAediting_1333152 | chr19_32583736_+ | intronic |
CAediting_1333153 | chr19_32583738_+ | intronic |
CAediting_1333154 | chr19_32583739_+ | intronic |
CAediting_1333155 | chr19_32583742_+ | intronic |
CAediting_1333156 | chr19_32583747_+ | intronic |
CAediting_1333157 | chr19_32583781_+ | intronic |
CAediting_1333158 | chr19_32583793_+ | intronic |
CAediting_1333159 | chr19_32583856_+ | intronic |
CAediting_1333160 | chr19_32583857_+ | intronic |
CAediting_1333161 | chr19_32583875_+ | intronic |
CAediting_1333162 | chr19_32583882_+ | intronic |
CAediting_1333163 | chr19_32583893_+ | intronic |
CAediting_1333164 | chr19_32583925_+ | intronic |
CAediting_1333165 | chr19_32583931_+ | intronic |
CAediting_1333166 | chr19_32583932_+ | intronic |
CAediting_1333167 | chr19_32583957_+ | intronic |
CAediting_1333168 | chr19_32583958_+ | intronic |
CAediting_1333169 | chr19_32583961_+ | intronic |
CAediting_1333170 | chr19_32583973_+ | intronic |
CAediting_1333171 | chr19_32584079_+ | intronic |
![]() |
CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1333136 | chr19_32583364_+ | SINE | Alu | AluJr |
CAediting_1333137 | chr19_32583397_+ | SINE | Alu | AluJr |
CAediting_1333138 | chr19_32583503_+ | SINE | Alu | AluJr |
CAediting_1333139 | chr19_32583504_+ | SINE | Alu | AluJr |
CAediting_1333140 | chr19_32583505_+ | SINE | Alu | AluJr |
CAediting_1333141 | chr19_32583517_+ | SINE | Alu | AluJr |
CAediting_1333142 | chr19_32583518_+ | SINE | Alu | AluJr |
CAediting_1333143 | chr19_32583651_+ | DNA | TcMar-Tc2 | MER104 |
CAediting_1333144 | chr19_32583694_+ | SINE | Alu | FRAM |
CAediting_1333145 | chr19_32583698_+ | SINE | Alu | FRAM |
CAediting_1333146 | chr19_32583699_+ | SINE | Alu | FRAM |
CAediting_1333147 | chr19_32583706_+ | SINE | Alu | FRAM |
CAediting_1333148 | chr19_32583716_+ | SINE | Alu | FRAM |
CAediting_1333149 | chr19_32583720_+ | SINE | Alu | FRAM |
CAediting_1333150 | chr19_32583723_+ | SINE | Alu | FRAM |
CAediting_1333151 | chr19_32583729_+ | SINE | Alu | FRAM |
CAediting_1333152 | chr19_32583736_+ | SINE | Alu | FRAM |
CAediting_1333153 | chr19_32583738_+ | SINE | Alu | FRAM |
CAediting_1333154 | chr19_32583739_+ | SINE | Alu | FRAM |
CAediting_1333155 | chr19_32583742_+ | SINE | Alu | FRAM |
CAediting_1333156 | chr19_32583747_+ | SINE | Alu | FRAM |
CAediting_1333157 | chr19_32583781_+ | SINE | Alu | FRAM |
CAediting_1333158 | chr19_32583793_+ | SINE | Alu | FRAM |
CAediting_1333159 | chr19_32583856_+ | SINE | Alu | AluSx1 |
CAediting_1333160 | chr19_32583857_+ | SINE | Alu | AluSx1 |
CAediting_1333161 | chr19_32583875_+ | SINE | Alu | AluSx1 |
CAediting_1333162 | chr19_32583882_+ | SINE | Alu | AluSx1 |
CAediting_1333163 | chr19_32583893_+ | SINE | Alu | AluSx1 |
CAediting_1333164 | chr19_32583925_+ | SINE | Alu | AluSx1 |
CAediting_1333165 | chr19_32583931_+ | SINE | Alu | AluSx1 |
CAediting_1333166 | chr19_32583932_+ | SINE | Alu | AluSx1 |
CAediting_1333167 | chr19_32583957_+ | SINE | Alu | AluSx1 |
CAediting_1333168 | chr19_32583958_+ | SINE | Alu | AluSx1 |
CAediting_1333169 | chr19_32583961_+ | SINE | Alu | AluSx1 |
CAediting_1333170 | chr19_32583973_+ | SINE | Alu | AluSx1 |
CAediting_1333171 | chr19_32584079_+ | SINE | Alu | AluSx1 |
Top |
RNA A-to-I editing events in the alternative splicing sites for PDCD5 |
![]() |
AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
![]() |
![]() |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for PDCD5 |
![]() * The grey color means N/A. |
![]() |
![]() |
![]() |
![]() * Click on the image to enlarge it in a new window. |
Top |
Protein coding region RNA A-to-I editings for PDCD5 |
![]() * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for PDCD5 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_524911 | chr7_5495852_- | ENSG00000105185.10 | ENST00000419343 | hsa-miR-589-3p | 32586107 | 32586113 | 7mer-m8 | 32586092 | 32586114 | 158 | -24.47 |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688080 | chr9_63819626_+ | ENSG00000105185.10 | ENST00000419343 | hsa-miR-4477b | 32586882 | 32586889 | 8mer-1a | 32586868 | 32586889 | 153 | -9.06 |
CAediting_688081 | chr9_63819627_+ | ENSG00000105185.10 | ENST00000419343 | hsa-miR-4477b | 32586882 | 32586889 | 8mer-1a | 32586868 | 32586889 | 153 | -9.06 |
CAediting_396018 | chr5_1062918_- | ENSG00000105185.10 | ENST00000419343 | hsa-miR-4635 | 32586482 | 32586488 | 7mer-m8 | 32586468 | 32586489 | 142 | -13.41 |
CAediting_524911 | chr7_5495852_- | ENSG00000105185.10 | ENST00000419343 | hsa-miR-589-3p | 32587221 | 32587228 | 8mer-1a | 32587205 | 32587228 | 140 | -11.34 |
CAediting_468389 | chr6_31355314_- | ENSG00000105185.10 | ENST00000419343 | hsa-miR-6891-5p | 32586478 | 32586484 | 7mer-m8 | 32586467 | 32586485 | 143 | -17 |
![]() |
Top |
The effects of the RNA editing to the stability of the RNA structures for PDCD5 |
![]() * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
![]() |
CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
Top |
Relation with ADAR for PDCD5 |
![]() |
Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
ESCA | CAediting_1333147 | chr19_32583706_+ | . | . | 0.0326688428713318 | 0.280927573227622 | . | . |
OV | CAediting_1333147 | chr19_32583706_+ | 3.96850910804813e-06 | 0.54077132508624 | . | . | . | . |
OV | CAediting_1333149 | chr19_32583720_+ | 0.00228642786139052 | 0.317597114841592 | . | . | . | . |
OV | CAediting_1333157 | chr19_32583781_+ | 0.0340340566507598 | 0.20140340128468 | . | . | . | . |
OV | CAediting_1333167 | chr19_32583957_+ | 6.49613940403551e-05 | 0.394100441104114 | . | . | . | . |
Top |
Relation with cancer stages for PDCD5 |
![]() |
Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
KIRC | pathologic_stage | CAediting_1333149 | chr19_32583720_+ | 0.00133707900227909 | 0.350501778450115 |
Top |
Relation with survival for PDCD5 |
![]() |
Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
Top |
RelatedDrugs for PDCD5 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for PDCD5 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |