CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SEC11C (CAeditome ID:90701)

Gene summary for SEC11C

check button Gene summary
Gene informationGene symbol

SEC11C

Gene ID

90701

Gene nameSEC11 homolog C, signal peptidase complex subunit
SynonymsSEC11L3|SPC21|SPCS4C
Cytomap

18q21.32

Type of geneprotein-coding
Descriptionsignal peptidase complex catalytic subunit SEC11CSEC11-like 3SEC11-like protein 3SPase 21 kDa subunitmicrosomal signal peptidase 21 kDa subunitsignal peptidase complex 21
Modification date20210518
UniProtAcc

Q9BY50

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

Top

RNA A-to-I events for SEC11C

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000166562.7

check button RNA A-to-I editing events in Cancer.
CAediting_1266673(59143097, +), CAediting_1266674(59143128, +), CAediting_1266675(59143153, +), CAediting_1266676(59143188, +), CAediting_1266677(59143191, +), CAediting_1266678(59143193, +), CAediting_1266679(59143194, +), CAediting_1266680(59143197, +), CAediting_1266681(59143202, +), CAediting_1266682(59143203, +), CAediting_1266683(59143206, +), CAediting_1266684(59143233, +), CAediting_1266685(59143238, +), CAediting_1266686(59143242, +), CAediting_1266687(59143259, +), CAediting_1266688(59143268, +), CAediting_1266689(59143273, +), CAediting_1266690(59143278, +), CAediting_1266691(59143298, +), CAediting_1266692(59143305, +), CAediting_1266693(59143332, +), CAediting_1266694(59143915, +), CAediting_1266695(59143932, +), CAediting_1266696(59143969, +), CAediting_1266697(59143991, +), CAediting_1266698(59143999, +), CAediting_1266699(59144034, +), CAediting_1266700(59144037, +), CAediting_1266701(59144054, +), CAediting_1266702(59144063, +), CAediting_1266703(59144076, +), CAediting_1266704(59144088, +), CAediting_1266705(59144093, +), CAediting_1266706(59144101, +), CAediting_1266707(59144116, +), CAediting_1266708(59144134, +), CAediting_1266709(59144455, +), CAediting_1266710(59144475, +), CAediting_1266711(59144477, +), CAediting_1266712(59144505, +), CAediting_1266713(59144510, +), CAediting_1266714(59144519, +), CAediting_1266715(59144520, +), CAediting_1266716(59144531, +), CAediting_1266717(59144535, +), CAediting_1266718(59144539, +), CAediting_1266719(59144540, +), CAediting_1266720(59144542, +), CAediting_1266721(59144605, +), CAediting_1266722(59144650, +), CAediting_1266723(59144685, +), CAediting_1266724(59148755, +), CAediting_1266725(59148802, +), CAediting_1266726(59153570, +), CAediting_1266727(59153572, +), CAediting_1266728(59153582, +), CAediting_1266729(59153590, +), CAediting_1266730(59153601, +), CAediting_1266731(59153615, +), CAediting_1266732(59153630, +), CAediting_1266733(59153631, +), CAediting_1266734(59153650, +), CAediting_1266735(59153651, +), CAediting_1266736(59153668, +), CAediting_1266737(59153677, +), CAediting_1266738(59153690, +), CAediting_1266739(59153693, +), CAediting_1266740(59153793, +), CAediting_1266741(59153806, +), CAediting_1266742(59153807, +), CAediting_1266743(59153810, +), CAediting_1266744(59153811, +), CAediting_1266745(59153824, +), CAediting_1266746(59153833, +), CAediting_1266747(59153836, +), CAediting_1266748(59153842, +), CAediting_1266749(59153846, +), CAediting_1266750(59153941, +), CAediting_1266751(59153981, +), CAediting_1266752(59154810, +), CAediting_1266753(59154811, +), CAediting_1266754(59154816, +), CAediting_1266755(59154889, +), CAediting_1266756(59154890, +), CAediting_1266757(59154901, +), CAediting_1266758(59154905, +), CAediting_1266759(59154907, +), CAediting_1266760(59154908, +), CAediting_1266761(59154910, +), CAediting_1266762(59154912, +), CAediting_1266763(59154914, +), CAediting_1266764(59154915, +), CAediting_1266765(59154916, +), CAediting_1266766(59154939, +), CAediting_1266767(59154945, +), CAediting_1266768(59154946, +), CAediting_1266769(59154955, +), CAediting_1266770(59154967, +), CAediting_1266771(59154971, +), CAediting_1266772(59154976, +), CAediting_1266773(59154977, +), CAediting_1266774(59154985, +), CAediting_1266775(59154986, +), CAediting_1266776(59154993, +), CAediting_1266777(59154997, +), CAediting_1266778(59154999, +), CAediting_1266779(59155006, +), CAediting_1266780(59155010, +), CAediting_1266781(59155015, +), CAediting_1266782(59155017, +), CAediting_1266783(59155022, +), CAediting_1266784(59155025, +), CAediting_1266785(59155026, +), CAediting_1266786(59155045, +), CAediting_1266787(59155047, +), CAediting_1266788(59155049, +), CAediting_1266789(59155053, +), CAediting_1266790(59156053, +), CAediting_1266791(59156069, +), CAediting_1266792(59156075, +), CAediting_1266793(59156076, +), CAediting_1266794(59156081, +), CAediting_1266795(59156099, +), CAediting_1266796(59156103, +), CAediting_1266797(59156112, +), CAediting_1266798(59156122, +), CAediting_1266799(59156142, +), CAediting_1266800(59156150, +), CAediting_1266801(59156156, +), CAediting_1266802(59158149, +), CAediting_1266803(59158230, +), CAediting_1266804(59158236, +), CAediting_1266805(59158239, +), CAediting_1266806(59158290, +), CAediting_1266807(59158317, +), CAediting_1266808(59158318, +),

Top

RNA editing positional annotations for SEC11C using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1266673chr18_59143097_+ncRNA_intronic
CAediting_1266674chr18_59143128_+ncRNA_intronic
CAediting_1266675chr18_59143153_+ncRNA_intronic
CAediting_1266676chr18_59143188_+ncRNA_intronic
CAediting_1266677chr18_59143191_+ncRNA_intronic
CAediting_1266678chr18_59143193_+ncRNA_intronic
CAediting_1266679chr18_59143194_+ncRNA_intronic
CAediting_1266680chr18_59143197_+ncRNA_intronic
CAediting_1266681chr18_59143202_+ncRNA_intronic
CAediting_1266682chr18_59143203_+ncRNA_intronic
CAediting_1266683chr18_59143206_+ncRNA_intronic
CAediting_1266684chr18_59143233_+ncRNA_intronic
CAediting_1266685chr18_59143238_+ncRNA_intronic
CAediting_1266686chr18_59143242_+ncRNA_intronic
CAediting_1266687chr18_59143259_+ncRNA_intronic
CAediting_1266688chr18_59143268_+ncRNA_intronic
CAediting_1266689chr18_59143273_+ncRNA_intronic
CAediting_1266690chr18_59143278_+ncRNA_intronic
CAediting_1266691chr18_59143298_+ncRNA_intronic
CAediting_1266692chr18_59143305_+ncRNA_intronic
CAediting_1266693chr18_59143332_+ncRNA_intronic
CAediting_1266694chr18_59143915_+ncRNA_intronic
CAediting_1266695chr18_59143932_+ncRNA_intronic
CAediting_1266696chr18_59143969_+ncRNA_intronic
CAediting_1266697chr18_59143991_+ncRNA_intronic
CAediting_1266698chr18_59143999_+ncRNA_intronic
CAediting_1266699chr18_59144034_+ncRNA_intronic
CAediting_1266700chr18_59144037_+ncRNA_intronic
CAediting_1266701chr18_59144054_+ncRNA_intronic
CAediting_1266702chr18_59144063_+ncRNA_intronic
CAediting_1266703chr18_59144076_+ncRNA_intronic
CAediting_1266704chr18_59144088_+ncRNA_intronic
CAediting_1266705chr18_59144093_+ncRNA_intronic
CAediting_1266706chr18_59144101_+ncRNA_intronic
CAediting_1266707chr18_59144116_+ncRNA_intronic
CAediting_1266708chr18_59144134_+ncRNA_intronic
CAediting_1266709chr18_59144455_+ncRNA_intronic
CAediting_1266710chr18_59144475_+ncRNA_intronic
CAediting_1266711chr18_59144477_+ncRNA_intronic
CAediting_1266712chr18_59144505_+ncRNA_intronic
CAediting_1266713chr18_59144510_+ncRNA_intronic
CAediting_1266714chr18_59144519_+ncRNA_intronic
CAediting_1266715chr18_59144520_+ncRNA_intronic
CAediting_1266716chr18_59144531_+ncRNA_intronic
CAediting_1266717chr18_59144535_+ncRNA_intronic
CAediting_1266718chr18_59144539_+ncRNA_intronic
CAediting_1266719chr18_59144540_+ncRNA_intronic
CAediting_1266720chr18_59144542_+ncRNA_intronic
CAediting_1266721chr18_59144605_+ncRNA_intronic
CAediting_1266722chr18_59144650_+ncRNA_intronic
CAediting_1266723chr18_59144685_+ncRNA_intronic
CAediting_1266724chr18_59148755_+ncRNA_intronic
CAediting_1266725chr18_59148802_+ncRNA_intronic
CAediting_1266726chr18_59153570_+intronic
CAediting_1266727chr18_59153572_+intronic
CAediting_1266728chr18_59153582_+intronic
CAediting_1266729chr18_59153590_+intronic
CAediting_1266730chr18_59153601_+intronic
CAediting_1266731chr18_59153615_+intronic
CAediting_1266732chr18_59153630_+intronic
CAediting_1266733chr18_59153631_+intronic
CAediting_1266734chr18_59153650_+intronic
CAediting_1266735chr18_59153651_+intronic
CAediting_1266736chr18_59153668_+intronic
CAediting_1266737chr18_59153677_+intronic
CAediting_1266738chr18_59153690_+intronic
CAediting_1266739chr18_59153693_+intronic
CAediting_1266740chr18_59153793_+intronic
CAediting_1266741chr18_59153806_+intronic
CAediting_1266742chr18_59153807_+intronic
CAediting_1266743chr18_59153810_+intronic
CAediting_1266744chr18_59153811_+intronic
CAediting_1266745chr18_59153824_+intronic
CAediting_1266746chr18_59153833_+intronic
CAediting_1266747chr18_59153836_+intronic
CAediting_1266748chr18_59153842_+intronic
CAediting_1266749chr18_59153846_+intronic
CAediting_1266750chr18_59153941_+intronic
CAediting_1266751chr18_59153981_+intronic
CAediting_1266752chr18_59154810_+intronic
CAediting_1266753chr18_59154811_+intronic
CAediting_1266754chr18_59154816_+intronic
CAediting_1266755chr18_59154889_+intronic
CAediting_1266756chr18_59154890_+intronic
CAediting_1266757chr18_59154901_+intronic
CAediting_1266758chr18_59154905_+intronic
CAediting_1266759chr18_59154907_+intronic
CAediting_1266760chr18_59154908_+intronic
CAediting_1266761chr18_59154910_+intronic
CAediting_1266762chr18_59154912_+intronic
CAediting_1266763chr18_59154914_+intronic
CAediting_1266764chr18_59154915_+intronic
CAediting_1266765chr18_59154916_+intronic
CAediting_1266766chr18_59154939_+intronic
CAediting_1266767chr18_59154945_+intronic
CAediting_1266768chr18_59154946_+intronic
CAediting_1266769chr18_59154955_+intronic
CAediting_1266770chr18_59154967_+intronic
CAediting_1266771chr18_59154971_+intronic
CAediting_1266772chr18_59154976_+intronic
CAediting_1266773chr18_59154977_+intronic
CAediting_1266774chr18_59154985_+intronic
CAediting_1266775chr18_59154986_+intronic
CAediting_1266776chr18_59154993_+intronic
CAediting_1266777chr18_59154997_+intronic
CAediting_1266778chr18_59154999_+intronic
CAediting_1266779chr18_59155006_+intronic
CAediting_1266780chr18_59155010_+intronic
CAediting_1266781chr18_59155015_+intronic
CAediting_1266782chr18_59155017_+intronic
CAediting_1266783chr18_59155022_+intronic
CAediting_1266784chr18_59155025_+intronic
CAediting_1266785chr18_59155026_+intronic
CAediting_1266786chr18_59155045_+intronic
CAediting_1266787chr18_59155047_+intronic
CAediting_1266788chr18_59155049_+intronic
CAediting_1266789chr18_59155053_+intronic
CAediting_1266790chr18_59156053_+ncRNA_intronic
CAediting_1266791chr18_59156069_+ncRNA_intronic
CAediting_1266792chr18_59156075_+ncRNA_intronic
CAediting_1266793chr18_59156076_+ncRNA_intronic
CAediting_1266794chr18_59156081_+ncRNA_intronic
CAediting_1266795chr18_59156099_+ncRNA_intronic
CAediting_1266796chr18_59156103_+ncRNA_intronic
CAediting_1266797chr18_59156112_+ncRNA_intronic
CAediting_1266798chr18_59156122_+ncRNA_intronic
CAediting_1266799chr18_59156142_+ncRNA_intronic
CAediting_1266800chr18_59156150_+ncRNA_intronic
CAediting_1266801chr18_59156156_+ncRNA_intronic
CAediting_1266802chr18_59158149_+ncRNA_intronic
CAediting_1266803chr18_59158230_+ncRNA_intronic
CAediting_1266804chr18_59158236_+ncRNA_intronic
CAediting_1266805chr18_59158239_+ncRNA_intronic
CAediting_1266806chr18_59158290_+ncRNA_intronic
CAediting_1266807chr18_59158317_+ncRNA_intronic
CAediting_1266808chr18_59158318_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1266673chr18_59143097_+SINEAluAluSz
CAediting_1266674chr18_59143128_+SINEAluAluSz
CAediting_1266675chr18_59143153_+SINEAluAluSz
CAediting_1266676chr18_59143188_+SINEAluAluSz
CAediting_1266677chr18_59143191_+SINEAluAluSz
CAediting_1266678chr18_59143193_+SINEAluAluSz
CAediting_1266679chr18_59143194_+SINEAluAluSz
CAediting_1266680chr18_59143197_+SINEAluAluSz
CAediting_1266681chr18_59143202_+SINEAluAluSz
CAediting_1266682chr18_59143203_+SINEAluAluSz
CAediting_1266683chr18_59143206_+SINEAluAluSz
CAediting_1266684chr18_59143233_+SINEAluAluSz
CAediting_1266685chr18_59143238_+SINEAluAluSz
CAediting_1266686chr18_59143242_+SINEAluAluSz
CAediting_1266687chr18_59143259_+SINEAluAluSz
CAediting_1266688chr18_59143268_+SINEAluAluSz
CAediting_1266689chr18_59143273_+SINEAluAluSz
CAediting_1266690chr18_59143278_+SINEAluAluSz
CAediting_1266691chr18_59143298_+SINEAluAluSz
CAediting_1266692chr18_59143305_+SINEAluAluSz
CAediting_1266693chr18_59143332_+SINEAluAluSz
CAediting_1266694chr18_59143915_+SINEAluAluSx
CAediting_1266695chr18_59143932_+SINEAluAluSx
CAediting_1266696chr18_59143969_+SINEAluAluSx
CAediting_1266697chr18_59143991_+SINEAluAluSx
CAediting_1266698chr18_59143999_+SINEAluAluSx
CAediting_1266699chr18_59144034_+SINEAluAluSx
CAediting_1266700chr18_59144037_+SINEAluAluSx
CAediting_1266701chr18_59144054_+SINEAluAluSx
CAediting_1266702chr18_59144063_+SINEAluAluSx
CAediting_1266703chr18_59144076_+SINEAluAluSx
CAediting_1266704chr18_59144088_+SINEAluAluSx
CAediting_1266705chr18_59144093_+SINEAluAluSx
CAediting_1266706chr18_59144101_+SINEAluAluSx
CAediting_1266707chr18_59144116_+SINEAluAluSx
CAediting_1266708chr18_59144134_+SINEAluAluSx
CAediting_1266709chr18_59144455_+SINEAluAluJr
CAediting_1266710chr18_59144475_+SINEAluAluJr
CAediting_1266711chr18_59144477_+SINEAluAluJr
CAediting_1266712chr18_59144505_+SINEAluAluJr
CAediting_1266713chr18_59144510_+SINEAluAluJr
CAediting_1266714chr18_59144519_+SINEAluAluJr
CAediting_1266715chr18_59144520_+SINEAluAluJr
CAediting_1266716chr18_59144531_+SINEAluAluJr
CAediting_1266717chr18_59144535_+SINEAluAluJr
CAediting_1266718chr18_59144539_+SINEAluAluJr
CAediting_1266719chr18_59144540_+SINEAluAluJr
CAediting_1266720chr18_59144542_+SINEAluAluJr
CAediting_1266721chr18_59144605_+SINEAluAluJr
CAediting_1266722chr18_59144650_+SINEAluAluJr
CAediting_1266723chr18_59144685_+SINEAluAluJr
CAediting_1266724chr18_59148755_+SINEAluAluY
CAediting_1266725chr18_59148802_+SINEAluAluY
CAediting_1266726chr18_59153570_+SINEAluAluSx4
CAediting_1266727chr18_59153572_+SINEAluAluSx4
CAediting_1266728chr18_59153582_+SINEAluAluSx4
CAediting_1266729chr18_59153590_+SINEAluAluSx4
CAediting_1266730chr18_59153601_+SINEAluAluSx4
CAediting_1266731chr18_59153615_+SINEAluAluSx4
CAediting_1266732chr18_59153630_+SINEAluAluSx4
CAediting_1266733chr18_59153631_+SINEAluAluSx4
CAediting_1266734chr18_59153650_+SINEAluAluSx4
CAediting_1266735chr18_59153651_+SINEAluAluSx4
CAediting_1266736chr18_59153668_+SINEAluAluSx4
CAediting_1266737chr18_59153677_+SINEAluAluSx4
CAediting_1266738chr18_59153690_+SINEAluAluSx4
CAediting_1266739chr18_59153693_+SINEAluAluSx4
CAediting_1266740chr18_59153793_+SINEAluAluSx
CAediting_1266741chr18_59153806_+SINEAluAluSx
CAediting_1266742chr18_59153807_+SINEAluAluSx
CAediting_1266743chr18_59153810_+SINEAluAluSx
CAediting_1266744chr18_59153811_+SINEAluAluSx
CAediting_1266745chr18_59153824_+SINEAluAluSx
CAediting_1266746chr18_59153833_+SINEAluAluSx
CAediting_1266747chr18_59153836_+SINEAluAluSx
CAediting_1266748chr18_59153842_+SINEAluAluSx
CAediting_1266749chr18_59153846_+SINEAluAluSx
CAediting_1266750chr18_59153941_+SINEAluAluSx
CAediting_1266751chr18_59153981_+SINEAluAluSx
CAediting_1266752chr18_59154810_+SINEAluAluSx1
CAediting_1266753chr18_59154811_+SINEAluAluSx1
CAediting_1266754chr18_59154816_+SINEAluAluSx1
CAediting_1266755chr18_59154889_+SINEAluAluSx1
CAediting_1266756chr18_59154890_+SINEAluAluSx1
CAediting_1266757chr18_59154901_+SINEAluAluSx1
CAediting_1266758chr18_59154905_+SINEAluAluSx1
CAediting_1266759chr18_59154907_+SINEAluAluSx1
CAediting_1266760chr18_59154908_+SINEAluAluSx1
CAediting_1266761chr18_59154910_+SINEAluAluSx1
CAediting_1266762chr18_59154912_+SINEAluAluSx1
CAediting_1266763chr18_59154914_+SINEAluAluSx1
CAediting_1266764chr18_59154915_+SINEAluAluSx1
CAediting_1266765chr18_59154916_+SINEAluAluSx1
CAediting_1266766chr18_59154939_+SINEAluAluSx1
CAediting_1266767chr18_59154945_+SINEAluAluSx1
CAediting_1266768chr18_59154946_+SINEAluAluSx1
CAediting_1266769chr18_59154955_+SINEAluAluSx1
CAediting_1266770chr18_59154967_+SINEAluAluSx1
CAediting_1266771chr18_59154971_+SINEAluAluSx1
CAediting_1266772chr18_59154976_+SINEAluAluSx1
CAediting_1266773chr18_59154977_+SINEAluAluSx1
CAediting_1266774chr18_59154985_+SINEAluAluSx1
CAediting_1266775chr18_59154986_+SINEAluAluSx1
CAediting_1266776chr18_59154993_+SINEAluAluSx1
CAediting_1266777chr18_59154997_+SINEAluAluSx1
CAediting_1266778chr18_59154999_+SINEAluAluSx1
CAediting_1266779chr18_59155006_+SINEAluAluSx1
CAediting_1266780chr18_59155010_+SINEAluAluSx1
CAediting_1266781chr18_59155015_+SINEAluAluSx1
CAediting_1266782chr18_59155017_+SINEAluAluSx1
CAediting_1266783chr18_59155022_+SINEAluAluSx1
CAediting_1266784chr18_59155025_+SINEAluAluSx1
CAediting_1266785chr18_59155026_+SINEAluAluSx1
CAediting_1266786chr18_59155045_+SINEAluAluSx1
CAediting_1266787chr18_59155047_+SINEAluAluSx1
CAediting_1266788chr18_59155049_+SINEAluAluSx1
CAediting_1266789chr18_59155053_+SINEAluAluSx1
CAediting_1266790chr18_59156053_+SINEAluAluJr4
CAediting_1266791chr18_59156069_+SINEAluAluJr4
CAediting_1266792chr18_59156075_+SINEAluAluJr4
CAediting_1266793chr18_59156076_+SINEAluAluJr4
CAediting_1266794chr18_59156081_+SINEAluAluJr4
CAediting_1266795chr18_59156099_+SINEAluAluJr4
CAediting_1266796chr18_59156103_+SINEAluAluJr4
CAediting_1266797chr18_59156112_+SINEAluAluJr4
CAediting_1266798chr18_59156122_+SINEAluAluJr4
CAediting_1266799chr18_59156142_+SINEAluAluJr4
CAediting_1266800chr18_59156150_+SINEAluAluJr4
CAediting_1266801chr18_59156156_+SINEAluAluJr4
CAediting_1266802chr18_59158149_+SINEAluAluSx1
CAediting_1266803chr18_59158230_+SINEAluAluSx1
CAediting_1266804chr18_59158236_+SINEAluAluSx1
CAediting_1266805chr18_59158239_+SINEAluAluSx1
CAediting_1266806chr18_59158290_+SINEAluAluSx1
CAediting_1266807chr18_59158317_+SINEAluAluSx1
CAediting_1266808chr18_59158318_+SINEAluAluSx1

Top

RNA A-to-I editing events in the alternative splicing sites for SEC11C

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000166562.7.SEC11C.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000166562.7.SEC11C.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for SEC11C

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
PRAD.CAediting_1266777.ENSG00000166562.SEC11C.png
Soverview

Top

Protein coding region RNA A-to-I editings for SEC11C

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for SEC11C

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1266792chr18_59156075_+ENSG00000166562.7ENST00000509791hsa-miR-513a-5p59156069591560757mer-m85915605959156076144.00-17.77
CAediting_1266792chr18_59156075_+ENSG00000166562.7ENST00000509791hsa-miR-513a-5p59156069591560757mer-m85915605959156076144.00-17.77
CAediting_1266792chr18_59156075_+ENSG00000166562.7ENST00000509791hsa-miR-63859156074591560807mer-1a5915605659156080149.00-29.88
CAediting_1266795chr18_59156099_+ENSG00000166562.7ENST00000509791hsa-miR-191359156097591561037mer-m85915607659156104149.00-27.28
CAediting_1266795chr18_59156099_+ENSG00000166562.7ENST00000509791hsa-miR-6849-3p59156092591560987mer-m85915607859156099140.00-16.61
CAediting_1266800chr18_59156150_+ENSG00000166562.7ENST00000509791hsa-miR-4716-5p59156144591561507mer-m85915613059156151142.00-12.39
CAediting_1266801chr18_59156156_+ENSG00000166562.7ENST00000509791hsa-miR-324-5p59156150591561567mer-m85915613759156157148.00-12.55

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1266792chr18_59156075_+ENSG00000166562.7ENST00000509791hsa-miR-10399-5p59156070591560767mer-m85915605659156077148-10
CAediting_1266793chr18_59156076_+ENSG00000166562.7ENST00000509791hsa-miR-10399-5p59156070591560767mer-m85915605659156077148-10
CAediting_1266798chr18_59156122_+ENSG00000166562.7ENST00000509791hsa-miR-10400-3p59156115591561217mer-m85915610159156122140-21.46
CAediting_1266797chr18_59156112_+ENSG00000166562.7ENST00000509791hsa-miR-1245a59156107591561137mer-m85915609459156114149-18.4
CAediting_1266798chr18_59156122_+ENSG00000166562.7ENST00000509791hsa-miR-1343-3p59156118591561247mer-m85915610459156125140-20.74
CAediting_1266796chr18_59156103_+ENSG00000166562.7ENST00000509791hsa-miR-197659156100591561067mer-m85915608759156107149-26.06
CAediting_1266790chr18_59156053_+ENSG00000166562.7ENST00000509791hsa-miR-3064-5p59156047591560537mer-m85915603359156054145-16.78
CAediting_1266790chr18_59156053_+ENSG00000166562.7ENST00000509791hsa-miR-3085-3p59156047591560537mer-m85915603459156054140-14.34
CAediting_1266798chr18_59156122_+ENSG00000166562.7ENST00000509791hsa-miR-467459156115591561217mer-m85915610259156122147-22.8
CAediting_1266793chr18_59156076_+ENSG00000166562.7ENST00000509791hsa-miR-5089-5p59156074591560807mer-m85915605959156081148-13.62
CAediting_1266794chr18_59156081_+ENSG00000166562.7ENST00000509791hsa-miR-5089-5p59156074591560807mer-m85915605959156081148-13.62
CAediting_1266799chr18_59156142_+ENSG00000166562.7ENST00000509791hsa-miR-510-5p59156137591561448mer-1a5915612159156144147-19.45
CAediting_1266791chr18_59156069_+ENSG00000166562.7ENST00000509791hsa-miR-552-3p59156067591560748mer-1a5915605459156074140-14.09
CAediting_1266792chr18_59156075_+ENSG00000166562.7ENST00000509791hsa-miR-6504-3p59156070591560767mer-m85915605659156077149-15.11
CAediting_1266793chr18_59156076_+ENSG00000166562.7ENST00000509791hsa-miR-6504-3p59156070591560767mer-m85915605659156077149-15.11
CAediting_1266790chr18_59156053_+ENSG00000166562.7ENST00000509791hsa-miR-6504-5p59156047591560537mer-m85915603559156054147-16.75
CAediting_1266794chr18_59156081_+ENSG00000166562.7ENST00000509791hsa-miR-6506-5p59156075591560817mer-m85915606059156082144-13.21
CAediting_1266796chr18_59156103_+ENSG00000166562.7ENST00000509791hsa-miR-660-3p59156101591561088mer-1a5915608959156108144-16.11
CAediting_1266790chr18_59156053_+ENSG00000166562.7ENST00000509791hsa-miR-6720-3p59156051591560588mer-1a5915603659156058150-17.97
CAediting_1266796chr18_59156103_+ENSG00000166562.7ENST00000509791hsa-miR-6747-3p59156098591561058mer-1a5915608459156105150-24.16
CAediting_1266798chr18_59156122_+ENSG00000166562.7ENST00000509791hsa-miR-6783-3p59156118591561247mer-m85915610459156125151-25.03
CAediting_1266790chr18_59156053_+ENSG00000166562.7ENST00000509791hsa-miR-6842-3p59156046591560527mer-m85915603259156053140-18.04
CAediting_1266798chr18_59156122_+ENSG00000166562.7ENST00000509791hsa-miR-939-3p59156117591561248mer-1a5915610259156124148-23.07

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1399425chr20_1392958_-ENSG00000166562.7ENST00000509791hsa-miR-6869-5p59157147591571548mer-1a5915713359157154143-15.35
CAediting_604450chr7_133034877_-ENSG00000166562.7ENST00000509791hsa-miR-365459156578591565858mer-1a5915656859156585152-18.71
CAediting_524911chr7_5495852_-ENSG00000166562.7ENST00000509791hsa-miR-589-3p59157090591570967mer-m85915707659157097156-20

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_468389chr6_31355314_-ENSG00000166562.7ENST00000509791hsa-miR-6891-5p59157084591570907mer-m85915707359157091140-14.75

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for SEC11C

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for SEC11C

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LGGCAediting_1266728chr18_59153582_+0.004468444492183990.279320303293814....
LGGCAediting_1266777chr18_59154997_+....0.001080046743310190.408552789722253

Top

Relation with cancer stages for SEC11C

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for SEC11C

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for SEC11C

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for SEC11C

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource