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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: DUOXA1 (CAeditome ID:90527)

Gene summary for DUOXA1

check button Gene summary
Gene informationGene symbol

DUOXA1

Gene ID

90527

Gene namedual oxidase maturation factor 1
SynonymsNIP|NUMBIP|mol
Cytomap

15q21.1

Type of geneprotein-coding
Descriptiondual oxidase maturation factor 1dual oxidase activator 1dual oxidase maturation factor 1 alphadual oxidase maturation factor 1 betadual oxidase maturation factor 1 deltadual oxidase maturation factor 1 gammahomolog of Drosophila Numb-interacting pro
Modification date20210518
UniProtAcc

Q1HG43

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for DUOXA1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000140254.11

check button RNA A-to-I editing events in Cancer.
CAediting_1037274(45120603, -), CAediting_1037275(45120608, -), CAediting_1037276(45120610, -), CAediting_1037277(45120628, -), CAediting_1037278(45120637, -), CAediting_1037279(45120639, -), CAediting_1037280(45120668, -), CAediting_1037281(45120675, -), CAediting_1037282(45120679, -), CAediting_1037283(45120693, -), CAediting_1037284(45120703, -), CAediting_1037285(45120715, -), CAediting_1037286(45120716, -), CAediting_1037287(45120717, -), CAediting_1037288(45120721, -), CAediting_1037289(45120733, -), CAediting_1037290(45120755, -), CAediting_1037291(45120760, -), CAediting_1037292(45120763, -), CAediting_1037293(45120766, -), CAediting_1037294(45120769, -), CAediting_1037295(45120784, -), CAediting_1037296(45120803, -), CAediting_1037297(45120807, -),

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RNA editing positional annotations for DUOXA1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_1037276chr15_45120610_-nonsynonymous SNVENST00000267803.7c.A536Gp.Y179CDPD
CAediting_1037276chr15_45120610_-nonsynonymous SNVENST00000430224.5c.A401Gp.Y134CDPD
CAediting_1037276chr15_45120610_-nonsynonymous SNVENST00000558422.4c.A401Gp.Y134CDPD
CAediting_1037276chr15_45120610_-nonsynonymous SNVENST00000558996.4c.A401Gp.Y134CDPD
CAediting_1037276chr15_45120610_-nonsynonymous SNVENST00000559014.4c.A536Gp.Y179CDPD
CAediting_1037276chr15_45120610_-nonsynonymous SNVENST00000560572.4c.A536Gp.Y179CDPD
CAediting_1037276chr15_45120610_-nonsynonymous SNVENST00000613425.3c.A401Gp.Y134CDPD
CAediting_1037277chr15_45120628_-nonsynonymous SNVENST00000267803.7c.A518Gp.Y173CDDD
CAediting_1037277chr15_45120628_-nonsynonymous SNVENST00000430224.5c.A383Gp.Y128CDDD
CAediting_1037277chr15_45120628_-nonsynonymous SNVENST00000558422.4c.A383Gp.Y128CDDD
CAediting_1037277chr15_45120628_-nonsynonymous SNVENST00000558996.4c.A383Gp.Y128CDDD
CAediting_1037277chr15_45120628_-nonsynonymous SNVENST00000559014.4c.A518Gp.Y173CDDD
CAediting_1037277chr15_45120628_-nonsynonymous SNVENST00000560572.4c.A518Gp.Y173CDDD
CAediting_1037277chr15_45120628_-nonsynonymous SNVENST00000613425.3c.A383Gp.Y128CDDD
CAediting_1037278chr15_45120637_-nonsynonymous SNVENST00000267803.7c.A509Gp.Y170CDDD
CAediting_1037278chr15_45120637_-nonsynonymous SNVENST00000430224.5c.A374Gp.Y125CDDD
CAediting_1037278chr15_45120637_-nonsynonymous SNVENST00000558422.4c.A374Gp.Y125CDDD
CAediting_1037278chr15_45120637_-nonsynonymous SNVENST00000558996.4c.A374Gp.Y125CDDD
CAediting_1037278chr15_45120637_-nonsynonymous SNVENST00000559014.4c.A509Gp.Y170CDDD
CAediting_1037278chr15_45120637_-nonsynonymous SNVENST00000560572.4c.A509Gp.Y170CDDD
CAediting_1037278chr15_45120637_-nonsynonymous SNVENST00000613425.3c.A374Gp.Y125CDDD
CAediting_1037280chr15_45120668_-nonsynonymous SNVENST00000267803.7c.A478Gp.K160EDDN
CAediting_1037280chr15_45120668_-nonsynonymous SNVENST00000430224.5c.A343Gp.K115EDDN
CAediting_1037280chr15_45120668_-nonsynonymous SNVENST00000558422.4c.A343Gp.K115EDDN
CAediting_1037280chr15_45120668_-nonsynonymous SNVENST00000558996.4c.A343Gp.K115EDDN
CAediting_1037280chr15_45120668_-nonsynonymous SNVENST00000559014.4c.A478Gp.K160EDDN
CAediting_1037280chr15_45120668_-nonsynonymous SNVENST00000560572.4c.A478Gp.K160EDDN
CAediting_1037280chr15_45120668_-nonsynonymous SNVENST00000613425.3c.A343Gp.K115EDDN
CAediting_1037282chr15_45120679_-nonsynonymous SNVENST00000267803.7c.A467Gp.Y156CDDD
CAediting_1037282chr15_45120679_-nonsynonymous SNVENST00000430224.5c.A332Gp.Y111CDDD
CAediting_1037282chr15_45120679_-nonsynonymous SNVENST00000558422.4c.A332Gp.Y111CDDD
CAediting_1037282chr15_45120679_-nonsynonymous SNVENST00000558996.4c.A332Gp.Y111CDDD
CAediting_1037282chr15_45120679_-nonsynonymous SNVENST00000559014.4c.A467Gp.Y156CDDD
CAediting_1037282chr15_45120679_-nonsynonymous SNVENST00000560572.4c.A467Gp.Y156CDDD
CAediting_1037282chr15_45120679_-nonsynonymous SNVENST00000613425.3c.A332Gp.Y111CDDD
CAediting_1037288chr15_45120721_-nonsynonymous SNVENST00000267803.7c.A425Gp.Y142CDDD
CAediting_1037288chr15_45120721_-nonsynonymous SNVENST00000430224.5c.A290Gp.Y97CDDD
CAediting_1037288chr15_45120721_-nonsynonymous SNVENST00000558422.4c.A290Gp.Y97CDDD
CAediting_1037288chr15_45120721_-nonsynonymous SNVENST00000558996.4c.A290Gp.Y97CDDD
CAediting_1037288chr15_45120721_-nonsynonymous SNVENST00000559014.4c.A425Gp.Y142CDDD
CAediting_1037288chr15_45120721_-nonsynonymous SNVENST00000560572.4c.A425Gp.Y142CDDD
CAediting_1037288chr15_45120721_-nonsynonymous SNVENST00000613425.3c.A290Gp.Y97CDDD
CAediting_1037289chr15_45120733_-nonsynonymous SNVENST00000267803.7c.A413Gp.Y138CDDD
CAediting_1037289chr15_45120733_-nonsynonymous SNVENST00000430224.5c.A278Gp.Y93CDDD
CAediting_1037289chr15_45120733_-nonsynonymous SNVENST00000558422.4c.A278Gp.Y93CDDD
CAediting_1037289chr15_45120733_-nonsynonymous SNVENST00000558996.4c.A278Gp.Y93CDDD
CAediting_1037289chr15_45120733_-nonsynonymous SNVENST00000559014.4c.A413Gp.Y138CDDD
CAediting_1037289chr15_45120733_-nonsynonymous SNVENST00000560572.4c.A413Gp.Y138CDDD
CAediting_1037289chr15_45120733_-nonsynonymous SNVENST00000613425.3c.A278Gp.Y93CDDD
CAediting_1037291chr15_45120760_-nonsynonymous SNVENST00000267803.7c.A386Gp.E129GTBD
CAediting_1037291chr15_45120760_-nonsynonymous SNVENST00000430224.5c.A251Gp.E84GTBD
CAediting_1037291chr15_45120760_-nonsynonymous SNVENST00000558422.4c.A251Gp.E84GTBD
CAediting_1037291chr15_45120760_-nonsynonymous SNVENST00000558996.4c.A251Gp.E84GTBD
CAediting_1037291chr15_45120760_-nonsynonymous SNVENST00000559014.4c.A386Gp.E129GTBD
CAediting_1037291chr15_45120760_-nonsynonymous SNVENST00000560572.4c.A386Gp.E129GTBD
CAediting_1037291chr15_45120760_-nonsynonymous SNVENST00000613425.3c.A251Gp.E84GTBD
CAediting_1037292chr15_45120763_-nonsynonymous SNVENST00000267803.7c.A383Gp.E128GDDD
CAediting_1037292chr15_45120763_-nonsynonymous SNVENST00000430224.5c.A248Gp.E83GDDD
CAediting_1037292chr15_45120763_-nonsynonymous SNVENST00000558422.4c.A248Gp.E83GDDD
CAediting_1037292chr15_45120763_-nonsynonymous SNVENST00000558996.4c.A248Gp.E83GDDD
CAediting_1037292chr15_45120763_-nonsynonymous SNVENST00000559014.4c.A383Gp.E128GDDD
CAediting_1037292chr15_45120763_-nonsynonymous SNVENST00000560572.4c.A383Gp.E128GDDD
CAediting_1037292chr15_45120763_-nonsynonymous SNVENST00000613425.3c.A248Gp.E83GDDD
CAediting_1037293chr15_45120766_-nonsynonymous SNVENST00000267803.7c.A380Gp.N127SDPD
CAediting_1037293chr15_45120766_-nonsynonymous SNVENST00000430224.5c.A245Gp.N82SDPD
CAediting_1037293chr15_45120766_-nonsynonymous SNVENST00000558422.4c.A245Gp.N82SDPD
CAediting_1037293chr15_45120766_-nonsynonymous SNVENST00000558996.4c.A245Gp.N82SDPD
CAediting_1037293chr15_45120766_-nonsynonymous SNVENST00000559014.4c.A380Gp.N127SDPD
CAediting_1037293chr15_45120766_-nonsynonymous SNVENST00000560572.4c.A380Gp.N127SDPD
CAediting_1037293chr15_45120766_-nonsynonymous SNVENST00000613425.3c.A245Gp.N82SDPD
CAediting_1037294chr15_45120769_-nonsynonymous SNVENST00000267803.7c.A377Gp.Y126CDDD
CAediting_1037294chr15_45120769_-nonsynonymous SNVENST00000430224.5c.A242Gp.Y81CDDD
CAediting_1037294chr15_45120769_-nonsynonymous SNVENST00000558422.4c.A242Gp.Y81CDDD
CAediting_1037294chr15_45120769_-nonsynonymous SNVENST00000558996.4c.A242Gp.Y81CDDD
CAediting_1037294chr15_45120769_-nonsynonymous SNVENST00000559014.4c.A377Gp.Y126CDDD
CAediting_1037294chr15_45120769_-nonsynonymous SNVENST00000560572.4c.A377Gp.Y126CDDD
CAediting_1037294chr15_45120769_-nonsynonymous SNVENST00000613425.3c.A242Gp.Y81CDDD
CAediting_1037295chr15_45120784_-nonsynonymous SNVENST00000267803.7c.A362Gp.N121SDDD
CAediting_1037295chr15_45120784_-nonsynonymous SNVENST00000430224.5c.A227Gp.N76SDDD
CAediting_1037295chr15_45120784_-nonsynonymous SNVENST00000558326.4c.A227Gp.N76SDDD
CAediting_1037295chr15_45120784_-nonsynonymous SNVENST00000558422.4c.A227Gp.N76SDDD
CAediting_1037295chr15_45120784_-nonsynonymous SNVENST00000558996.4c.A227Gp.N76SDDD
CAediting_1037295chr15_45120784_-nonsynonymous SNVENST00000559014.4c.A362Gp.N121SDDD
CAediting_1037295chr15_45120784_-nonsynonymous SNVENST00000559988.4c.A362Gp.N121SDDD
CAediting_1037295chr15_45120784_-nonsynonymous SNVENST00000560572.4c.A362Gp.N121SDDD
CAediting_1037295chr15_45120784_-nonsynonymous SNVENST00000613425.3c.A227Gp.N76SDDD
CAediting_1037296chr15_45120803_-nonsynonymous SNVENST00000267803.7c.A343Gp.T115ADBN
CAediting_1037296chr15_45120803_-nonsynonymous SNVENST00000430224.5c.A208Gp.T70ADBN
CAediting_1037296chr15_45120803_-nonsynonymous SNVENST00000558326.4c.A208Gp.T70ADBN
CAediting_1037296chr15_45120803_-nonsynonymous SNVENST00000558422.4c.A208Gp.T70ADBN
CAediting_1037296chr15_45120803_-nonsynonymous SNVENST00000558996.4c.A208Gp.T70ADBN
CAediting_1037296chr15_45120803_-nonsynonymous SNVENST00000559014.4c.A343Gp.T115ADBN
CAediting_1037296chr15_45120803_-nonsynonymous SNVENST00000559226.4c.A208Gp.T70ADBN
CAediting_1037296chr15_45120803_-nonsynonymous SNVENST00000559988.4c.A343Gp.T115ADBN
CAediting_1037296chr15_45120803_-nonsynonymous SNVENST00000560572.4c.A343Gp.T115ADBN
CAediting_1037296chr15_45120803_-nonsynonymous SNVENST00000613425.3c.A208Gp.T70ADBN

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1037274chr15_45120603_-exonic
CAediting_1037275chr15_45120608_-exonic
CAediting_1037276chr15_45120610_-exonic
CAediting_1037277chr15_45120628_-exonic
CAediting_1037278chr15_45120637_-exonic
CAediting_1037279chr15_45120639_-exonic
CAediting_1037280chr15_45120668_-exonic
CAediting_1037281chr15_45120675_-exonic
CAediting_1037282chr15_45120679_-exonic
CAediting_1037283chr15_45120693_-exonic
CAediting_1037284chr15_45120703_-exonic
CAediting_1037285chr15_45120715_-exonic
CAediting_1037286chr15_45120716_-exonic
CAediting_1037287chr15_45120717_-exonic
CAediting_1037288chr15_45120721_-exonic
CAediting_1037289chr15_45120733_-exonic
CAediting_1037290chr15_45120755_-exonic
CAediting_1037291chr15_45120760_-exonic
CAediting_1037292chr15_45120763_-exonic
CAediting_1037293chr15_45120766_-exonic
CAediting_1037294chr15_45120769_-exonic
CAediting_1037295chr15_45120784_-exonic
CAediting_1037296chr15_45120803_-exonic
CAediting_1037297chr15_45120807_-splicing

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name

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RNA A-to-I editing events in the alternative splicing sites for DUOXA1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_1037296chr15_45120803_-45120803:451208253SS3+0iAGAGCTGCCTTGTGCCCTAGGGA6.74AGAGCTGCCTTGTGCCCTAGGGG6.68
ESCAediting_1037297chr15_45120807_-45120803:451208253SS0+2iAGAGCTGCCTTGTGCCCTAGGGA6.74AGAGCTGCCTTGTGCCCTGGGGA-1.21

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000140254.11.DUOXA1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000140254.11.DUOXA1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for DUOXA1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for DUOXA1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for DUOXA1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000140254.11ENST00000558996hsa-miR-605-3p45119021451190288mer-1a4511902145119045147-13.74
CAediting_980496chr14_31014685_-ENSG00000140254.11ENST00000559013hsa-miR-624-3p45120173451201797mer-m84512017245120192140-14.67
CAediting_748296chr10_51299626_+ENSG00000140254.11ENST00000559013hsa-miR-605-3p45119021451190288mer-1a4511902145119045147-13.74
CAediting_748296chr10_51299626_+ENSG00000140254.11ENST00000558422hsa-miR-605-3p45119021451190288mer-1a4511902145119045147-13.74
CAediting_1229413chr17_67471544_+ENSG00000140254.11ENST00000558996hsa-miR-548aa45118727451187337mer-m84511872645118750142-8.5
CAediting_228905chr2_188297554_+ENSG00000140254.11ENST00000558996hsa-miR-561-3p45117641451176466mer4511764045117663145-20.68
CAediting_1229413chr17_67471544_+ENSG00000140254.11ENST00000559013hsa-miR-548aa45118727451187337mer-m84511872645118750142-8.5
CAediting_1229413chr17_67471544_+ENSG00000140254.11ENST00000558422hsa-miR-548aa45118727451187337mer-m84511872645118750142-8.5
CAediting_1524209chrX_134546392_-ENSG00000140254.11ENST00000558996hsa-miR-503-5p45118817451188226mer4511881645118839140-20.8
CAediting_1524209chrX_134546392_-ENSG00000140254.11ENST00000559013hsa-miR-503-5p45118817451188226mer4511881645118839140-20.8
CAediting_1524209chrX_134546392_-ENSG00000140254.11ENST00000558422hsa-miR-503-5p45118817451188226mer4511881645118839140-20.8

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_396018chr5_1062918_-ENSG00000140254.11ENST00000558996hsa-miR-463545118803451188108mer-1a4511880345118823140-13.38
CAediting_580943chr7_100356700_+ENSG00000140254.11ENST00000558996hsa-miR-6840-3p45118687451186937mer-m84511868645118707140-15.89

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for DUOXA1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for DUOXA1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for DUOXA1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for DUOXA1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for DUOXA1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for DUOXA1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource