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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: YIF1B (CAeditome ID:90522)

Gene summary for YIF1B

check button Gene summary
Gene informationGene symbol

YIF1B

Gene ID

90522

Gene nameYip1 interacting factor homolog B, membrane trafficking protein
SynonymsFinGER8|KABAMAS
Cytomap

19q13.2

Type of geneprotein-coding
Descriptionprotein YIF1BYIP1-interacting factor homolog B
Modification date20210524
UniProtAcc

Q5BJH7

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
YIF1B

GO:0005783

Protein YIF1B

26077767

YIF1B

GO:0005793

Protein YIF1B

26077767

YIF1B

GO:0005794

Protein YIF1B

26077767


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RNA A-to-I events for YIF1B

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000167645.15

check button RNA A-to-I editing events in Cancer.
CAediting_1345662(38305929, -), CAediting_1345663(38305960, -), CAediting_1345664(38306058, -), CAediting_1345665(38306090, -), CAediting_1345666(38306116, -), CAediting_1345667(38306147, -), CAediting_1345668(38306284, -), CAediting_1345669(38306285, -), CAediting_1345670(38306320, -), CAediting_1345671(38306344, -), CAediting_1345672(38306350, -), CAediting_1345673(38306366, -), CAediting_1345674(38306372, -), CAediting_1345675(38306387, -), CAediting_1345676(38306388, -), CAediting_1345677(38306393, -), CAediting_1345678(38306399, -), CAediting_1345679(38306443, -), CAediting_1345680(38306457, -), CAediting_1345681(38306501, -), CAediting_1345682(38306810, -), CAediting_1345683(38306820, -), CAediting_1345684(38306846, -), CAediting_1345685(38306884, -), CAediting_1345686(38306886, -), CAediting_1345687(38306901, -), CAediting_1345688(38306907, -), CAediting_1345689(38306918, -), CAediting_1345690(38306937, -), CAediting_1345691(38306953, -), CAediting_1345692(38306954, -), CAediting_1345693(38306962, -), CAediting_1345694(38311128, -), CAediting_1345695(38311130, -), CAediting_1345696(38311163, -), CAediting_1345697(38311165, -), CAediting_1345698(38311175, -), CAediting_1345699(38311192, -), CAediting_1345700(38311205, -), CAediting_1345701(38311224, -), CAediting_1345702(38311281, -), CAediting_1345703(38311285, -), CAediting_1345704(38311840, -), CAediting_1345705(38311842, -), CAediting_1345706(38311854, -), CAediting_1345707(38311855, -), CAediting_1345708(38311873, -), CAediting_1345709(38311877, -), CAediting_1345710(38312010, -), CAediting_1345711(38312015, -), CAediting_1345712(38312056, -), CAediting_1345713(38312101, -), CAediting_1345714(38312179, -), CAediting_1345715(38312180, -), CAediting_1345716(38312189, -), CAediting_1345717(38312331, -), CAediting_1345718(38312334, -), CAediting_1345719(38312341, -), CAediting_1345720(38312965, -), CAediting_1345721(38313017, -), CAediting_1345722(38313019, -), CAediting_1345723(38313063, -), CAediting_1345724(38313089, -), CAediting_1345725(38313090, -), CAediting_1345726(38313119, -), CAediting_1345727(38313120, -), CAediting_1345728(38313153, -), CAediting_1345729(38313248, -), CAediting_1345730(38313369, -), CAediting_1345731(38313454, -), CAediting_1345732(38313488, -), CAediting_1345733(38314055, -), CAediting_1345734(38314068, -), CAediting_1345735(38314093, -), CAediting_1345736(38314102, -), CAediting_1345737(38314118, -), CAediting_1345738(38314122, -), CAediting_1345739(38314123, -), CAediting_1345740(38314137, -), CAediting_1345741(38314154, -), CAediting_1345742(38314163, -), CAediting_1345743(38314164, -), CAediting_1345744(38314170, -), CAediting_1345745(38314255, -), CAediting_1345746(38314300, -), CAediting_1345747(38314303, -), CAediting_1345748(38314319, -), CAediting_1345749(38314323, -), CAediting_1345750(38314333, -), CAediting_1345751(38314371, -), CAediting_1345752(38314411, -), CAediting_1345753(38314422, -), CAediting_1345754(38314457, -), CAediting_1345755(38314468, -), CAediting_1345756(38314472, -), CAediting_1345757(38314572, -), CAediting_1345758(38314574, -), CAediting_1345759(38314586, -), CAediting_1345760(38314587, -), CAediting_1345761(38314588, -), CAediting_1345762(38314653, -), CAediting_1345763(38314706, -), CAediting_1345764(38314716, -), CAediting_1345765(38314719, -), CAediting_1345766(38314720, -), CAediting_1345767(38314742, -), CAediting_1345768(38314751, -), CAediting_1345769(38314752, -), CAediting_1345770(38314758, -), CAediting_1345771(38314840, -), CAediting_1345772(38314850, -), CAediting_1345773(38314885, -), CAediting_1345774(38314888, -), CAediting_1345775(38314892, -), CAediting_1345776(38315015, -), CAediting_1345777(38315123, -), CAediting_1345778(38315133, -), CAediting_1345779(38315137, -), CAediting_1345780(38315162, -), CAediting_1345781(38315163, -), CAediting_1345782(38315193, -), CAediting_1345783(38316230, -), CAediting_1345784(38316249, -), CAediting_1345785(38316288, -), CAediting_1345786(38316289, -), CAediting_1345787(38316309, -), CAediting_1345788(38316421, -), CAediting_1345789(38316445, -), CAediting_1345790(38316457, -), CAediting_1345791(38316772, -), CAediting_1345792(38316782, -), CAediting_1345793(38316789, -), CAediting_1345794(38316884, -), CAediting_1345795(38316885, -), CAediting_1345796(38316888, -), CAediting_1345797(38316893, -), CAediting_1345798(38316907, -), CAediting_1345799(38316910, -), CAediting_1345800(38316917, -), CAediting_1345801(38316920, -), CAediting_1345802(38316927, -), CAediting_1345803(38316933, -),

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RNA editing positional annotations for YIF1B using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_1345689chr19_38306918_-nonsynonymous SNVENST00000337679.11c.A853Gp.T285ADBN
CAediting_1345689chr19_38306918_-nonsynonymous SNVENST00000591755.4c.A853Gp.T285ADBN

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1345662chr19_38305929_-ncRNA_intronic
CAediting_1345663chr19_38305960_-ncRNA_intronic
CAediting_1345664chr19_38306058_-ncRNA_intronic
CAediting_1345665chr19_38306090_-ncRNA_intronic
CAediting_1345666chr19_38306116_-ncRNA_intronic
CAediting_1345667chr19_38306147_-ncRNA_intronic
CAediting_1345668chr19_38306284_-ncRNA_intronic
CAediting_1345669chr19_38306285_-ncRNA_intronic
CAediting_1345670chr19_38306320_-ncRNA_intronic
CAediting_1345671chr19_38306344_-ncRNA_intronic
CAediting_1345672chr19_38306350_-ncRNA_intronic
CAediting_1345673chr19_38306366_-ncRNA_intronic
CAediting_1345674chr19_38306372_-ncRNA_intronic
CAediting_1345675chr19_38306387_-ncRNA_intronic
CAediting_1345676chr19_38306388_-ncRNA_intronic
CAediting_1345677chr19_38306393_-ncRNA_intronic
CAediting_1345678chr19_38306399_-ncRNA_intronic
CAediting_1345679chr19_38306443_-ncRNA_intronic
CAediting_1345680chr19_38306457_-ncRNA_intronic
CAediting_1345681chr19_38306501_-ncRNA_intronic
CAediting_1345682chr19_38306810_-ncRNA_exonic
CAediting_1345683chr19_38306820_-ncRNA_exonic
CAediting_1345684chr19_38306846_-ncRNA_exonic
CAediting_1345685chr19_38306884_-ncRNA_exonic
CAediting_1345686chr19_38306886_-exonic
CAediting_1345687chr19_38306901_-exonic
CAediting_1345688chr19_38306907_-exonic
CAediting_1345689chr19_38306918_-exonic
CAediting_1345690chr19_38306937_-exonic
CAediting_1345691chr19_38306953_-exonic
CAediting_1345692chr19_38306954_-exonic
CAediting_1345693chr19_38306962_-exonic
CAediting_1345694chr19_38311128_-ncRNA_intronic
CAediting_1345695chr19_38311130_-ncRNA_intronic
CAediting_1345696chr19_38311163_-ncRNA_intronic
CAediting_1345697chr19_38311165_-ncRNA_intronic
CAediting_1345698chr19_38311175_-ncRNA_intronic
CAediting_1345699chr19_38311192_-ncRNA_intronic
CAediting_1345700chr19_38311205_-ncRNA_intronic
CAediting_1345701chr19_38311224_-ncRNA_intronic
CAediting_1345702chr19_38311281_-ncRNA_intronic
CAediting_1345703chr19_38311285_-ncRNA_intronic
CAediting_1345704chr19_38311840_-ncRNA_intronic
CAediting_1345705chr19_38311842_-ncRNA_intronic
CAediting_1345706chr19_38311854_-ncRNA_intronic
CAediting_1345707chr19_38311855_-ncRNA_intronic
CAediting_1345708chr19_38311873_-ncRNA_intronic
CAediting_1345709chr19_38311877_-ncRNA_intronic
CAediting_1345710chr19_38312010_-ncRNA_intronic
CAediting_1345711chr19_38312015_-ncRNA_intronic
CAediting_1345712chr19_38312056_-ncRNA_intronic
CAediting_1345713chr19_38312101_-ncRNA_intronic
CAediting_1345714chr19_38312179_-ncRNA_intronic
CAediting_1345715chr19_38312180_-ncRNA_intronic
CAediting_1345716chr19_38312189_-ncRNA_intronic
CAediting_1345717chr19_38312331_-ncRNA_intronic
CAediting_1345718chr19_38312334_-ncRNA_intronic
CAediting_1345719chr19_38312341_-ncRNA_intronic
CAediting_1345720chr19_38312965_-ncRNA_intronic
CAediting_1345721chr19_38313017_-ncRNA_intronic
CAediting_1345722chr19_38313019_-ncRNA_intronic
CAediting_1345723chr19_38313063_-ncRNA_intronic
CAediting_1345724chr19_38313089_-ncRNA_intronic
CAediting_1345725chr19_38313090_-ncRNA_intronic
CAediting_1345726chr19_38313119_-ncRNA_intronic
CAediting_1345727chr19_38313120_-ncRNA_intronic
CAediting_1345728chr19_38313153_-ncRNA_intronic
CAediting_1345729chr19_38313248_-ncRNA_intronic
CAediting_1345730chr19_38313369_-ncRNA_intronic
CAediting_1345731chr19_38313454_-ncRNA_intronic
CAediting_1345732chr19_38313488_-ncRNA_intronic
CAediting_1345733chr19_38314055_-ncRNA_intronic
CAediting_1345734chr19_38314068_-ncRNA_intronic
CAediting_1345735chr19_38314093_-ncRNA_intronic
CAediting_1345736chr19_38314102_-ncRNA_intronic
CAediting_1345737chr19_38314118_-ncRNA_intronic
CAediting_1345738chr19_38314122_-ncRNA_intronic
CAediting_1345739chr19_38314123_-ncRNA_intronic
CAediting_1345740chr19_38314137_-ncRNA_intronic
CAediting_1345741chr19_38314154_-ncRNA_intronic
CAediting_1345742chr19_38314163_-ncRNA_intronic
CAediting_1345743chr19_38314164_-ncRNA_intronic
CAediting_1345744chr19_38314170_-ncRNA_intronic
CAediting_1345745chr19_38314255_-ncRNA_intronic
CAediting_1345746chr19_38314300_-ncRNA_intronic
CAediting_1345747chr19_38314303_-ncRNA_intronic
CAediting_1345748chr19_38314319_-ncRNA_intronic
CAediting_1345749chr19_38314323_-ncRNA_intronic
CAediting_1345750chr19_38314333_-ncRNA_intronic
CAediting_1345751chr19_38314371_-ncRNA_intronic
CAediting_1345752chr19_38314411_-ncRNA_intronic
CAediting_1345753chr19_38314422_-ncRNA_intronic
CAediting_1345754chr19_38314457_-ncRNA_intronic
CAediting_1345755chr19_38314468_-ncRNA_intronic
CAediting_1345756chr19_38314472_-ncRNA_intronic
CAediting_1345757chr19_38314572_-ncRNA_intronic
CAediting_1345758chr19_38314574_-ncRNA_intronic
CAediting_1345759chr19_38314586_-ncRNA_intronic
CAediting_1345760chr19_38314587_-ncRNA_intronic
CAediting_1345761chr19_38314588_-ncRNA_intronic
CAediting_1345762chr19_38314653_-ncRNA_intronic
CAediting_1345763chr19_38314706_-ncRNA_intronic
CAediting_1345764chr19_38314716_-ncRNA_intronic
CAediting_1345765chr19_38314719_-ncRNA_intronic
CAediting_1345766chr19_38314720_-ncRNA_intronic
CAediting_1345767chr19_38314742_-ncRNA_intronic
CAediting_1345768chr19_38314751_-ncRNA_intronic
CAediting_1345769chr19_38314752_-ncRNA_intronic
CAediting_1345770chr19_38314758_-ncRNA_intronic
CAediting_1345771chr19_38314840_-ncRNA_intronic
CAediting_1345772chr19_38314850_-ncRNA_intronic
CAediting_1345773chr19_38314885_-ncRNA_intronic
CAediting_1345774chr19_38314888_-ncRNA_intronic
CAediting_1345775chr19_38314892_-ncRNA_intronic
CAediting_1345776chr19_38315015_-ncRNA_intronic
CAediting_1345777chr19_38315123_-ncRNA_intronic
CAediting_1345778chr19_38315133_-ncRNA_intronic
CAediting_1345779chr19_38315137_-ncRNA_intronic
CAediting_1345780chr19_38315162_-ncRNA_intronic
CAediting_1345781chr19_38315163_-ncRNA_intronic
CAediting_1345782chr19_38315193_-ncRNA_intronic
CAediting_1345783chr19_38316230_-intronic
CAediting_1345784chr19_38316249_-intronic
CAediting_1345785chr19_38316288_-intronic
CAediting_1345786chr19_38316289_-intronic
CAediting_1345787chr19_38316309_-intronic
CAediting_1345788chr19_38316421_-intronic
CAediting_1345789chr19_38316445_-intronic
CAediting_1345790chr19_38316457_-intronic
CAediting_1345791chr19_38316772_-intronic
CAediting_1345792chr19_38316782_-intronic
CAediting_1345793chr19_38316789_-intronic
CAediting_1345794chr19_38316884_-intronic
CAediting_1345795chr19_38316885_-intronic
CAediting_1345796chr19_38316888_-intronic
CAediting_1345797chr19_38316893_-intronic
CAediting_1345798chr19_38316907_-intronic
CAediting_1345799chr19_38316910_-intronic
CAediting_1345800chr19_38316917_-intronic
CAediting_1345801chr19_38316920_-intronic
CAediting_1345802chr19_38316927_-intronic
CAediting_1345803chr19_38316933_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1345662chr19_38305929_-SINEAluAluSc
CAediting_1345663chr19_38305960_-SINEAluAluSc
CAediting_1345664chr19_38306058_-SINEAluAluSc
CAediting_1345665chr19_38306090_-SINEAluAluSc
CAediting_1345666chr19_38306116_-SINEAluAluSc
CAediting_1345667chr19_38306147_-SINEAluAluSc
CAediting_1345668chr19_38306284_-SINEAluAluJr
CAediting_1345669chr19_38306285_-SINEAluAluJr
CAediting_1345670chr19_38306320_-SINEAluAluJr
CAediting_1345671chr19_38306344_-SINEAluAluJr
CAediting_1345672chr19_38306350_-SINEAluAluJr
CAediting_1345673chr19_38306366_-SINEAluAluJr
CAediting_1345674chr19_38306372_-SINEAluAluJr
CAediting_1345675chr19_38306387_-SINEAluAluJr
CAediting_1345676chr19_38306388_-SINEAluAluJr
CAediting_1345677chr19_38306393_-SINEAluAluJr
CAediting_1345678chr19_38306399_-SINEAluAluJr
CAediting_1345679chr19_38306443_-SINEAluAluJr
CAediting_1345680chr19_38306457_-SINEAluAluJr
CAediting_1345681chr19_38306501_-SINEAluAluJr
CAediting_1345682chr19_38306810_-SINEAluAluSc8
CAediting_1345683chr19_38306820_-SINEAluAluSc8
CAediting_1345684chr19_38306846_-SINEAluAluSc8
CAediting_1345685chr19_38306884_-SINEAluAluSc8
CAediting_1345686chr19_38306886_-SINEAluAluSc8
CAediting_1345687chr19_38306901_-SINEAluAluSc8
CAediting_1345688chr19_38306907_-SINEAluAluSc8
CAediting_1345689chr19_38306918_-SINEAluAluSc8
CAediting_1345690chr19_38306937_-SINEAluAluSc8
CAediting_1345691chr19_38306953_-SINEAluAluSc8
CAediting_1345692chr19_38306954_-SINEAluAluSc8
CAediting_1345693chr19_38306962_-SINEAluAluSc8
CAediting_1345694chr19_38311128_-SINEAluAluJb
CAediting_1345695chr19_38311130_-SINEAluAluJb
CAediting_1345696chr19_38311163_-SINEAluAluJb
CAediting_1345697chr19_38311165_-SINEAluAluJb
CAediting_1345698chr19_38311175_-SINEAluAluJb
CAediting_1345699chr19_38311192_-SINEAluAluJb
CAediting_1345700chr19_38311205_-SINEAluAluJb
CAediting_1345701chr19_38311224_-SINEAluAluJb
CAediting_1345702chr19_38311281_-SINEAluAluJb
CAediting_1345703chr19_38311285_-SINEAluAluJb
CAediting_1345704chr19_38311840_-SINEAluAluSg
CAediting_1345705chr19_38311842_-SINEAluAluSg
CAediting_1345706chr19_38311854_-SINEAluAluSg
CAediting_1345707chr19_38311855_-SINEAluAluSg
CAediting_1345708chr19_38311873_-SINEAluAluSg
CAediting_1345709chr19_38311877_-SINEAluAluSg
CAediting_1345710chr19_38312010_-SINEAluAluSg
CAediting_1345711chr19_38312015_-SINEAluAluSg
CAediting_1345712chr19_38312056_-SINEAluAluSg
CAediting_1345713chr19_38312101_-SINEAluAluSg
CAediting_1345714chr19_38312179_-SINEAluAluJb
CAediting_1345715chr19_38312180_-SINEAluAluJb
CAediting_1345716chr19_38312189_-SINEAluAluJb
CAediting_1345717chr19_38312331_-SINEAluAluJb
CAediting_1345718chr19_38312334_-SINEAluAluJb
CAediting_1345719chr19_38312341_-SINEAluAluJb
CAediting_1345720chr19_38312965_-SINEAluAluSq2
CAediting_1345721chr19_38313017_-SINEAluAluSq2
CAediting_1345722chr19_38313019_-SINEAluAluSq2
CAediting_1345723chr19_38313063_-SINEAluAluSq2
CAediting_1345724chr19_38313089_-SINEAluAluSq2
CAediting_1345725chr19_38313090_-SINEAluAluSq2
CAediting_1345726chr19_38313119_-SINEAluAluSq2
CAediting_1345727chr19_38313120_-SINEAluAluSq2
CAediting_1345728chr19_38313153_-SINEAluAluSq2
CAediting_1345729chr19_38313248_-SINEAluAluSq2
CAediting_1345730chr19_38313369_-SINEAluAluY
CAediting_1345731chr19_38313454_-SINEAluAluY
CAediting_1345732chr19_38313488_-SINEAluAluY
CAediting_1345733chr19_38314055_-SINEAluAluSx3
CAediting_1345734chr19_38314068_-SINEAluAluSx3
CAediting_1345735chr19_38314093_-SINEAluAluSx3
CAediting_1345736chr19_38314102_-SINEAluAluSx3
CAediting_1345737chr19_38314118_-SINEAluAluSx3
CAediting_1345738chr19_38314122_-SINEAluAluSx3
CAediting_1345739chr19_38314123_-SINEAluAluSx3
CAediting_1345740chr19_38314137_-SINEAluAluSx3
CAediting_1345741chr19_38314154_-SINEAluAluSx3
CAediting_1345742chr19_38314163_-SINEAluAluSx3
CAediting_1345743chr19_38314164_-SINEAluAluSx3
CAediting_1345744chr19_38314170_-SINEAluAluSx3
CAediting_1345745chr19_38314255_-SINEAluAluSx4
CAediting_1345746chr19_38314300_-SINEAluAluSx4
CAediting_1345747chr19_38314303_-SINEAluAluSx4
CAediting_1345748chr19_38314319_-SINEAluAluSx4
CAediting_1345749chr19_38314323_-SINEAluAluSx4
CAediting_1345750chr19_38314333_-SINEAluAluSx4
CAediting_1345751chr19_38314371_-SINEAluAluSx4
CAediting_1345752chr19_38314411_-SINEAluAluSx4
CAediting_1345753chr19_38314422_-SINEAluAluSx4
CAediting_1345754chr19_38314457_-SINEAluAluSx4
CAediting_1345755chr19_38314468_-SINEAluAluSx4
CAediting_1345756chr19_38314472_-SINEAluAluSx4
CAediting_1345757chr19_38314572_-SINEAluAluSq10
CAediting_1345758chr19_38314574_-SINEAluAluSq10
CAediting_1345759chr19_38314586_-SINEAluAluSq10
CAediting_1345760chr19_38314587_-SINEAluAluSq10
CAediting_1345761chr19_38314588_-SINEAluAluSq10
CAediting_1345762chr19_38314653_-SINEAluAluSz6
CAediting_1345763chr19_38314706_-SINEAluAluSz6
CAediting_1345764chr19_38314716_-SINEAluAluSz6
CAediting_1345765chr19_38314719_-SINEAluAluSz6
CAediting_1345766chr19_38314720_-SINEAluAluSz6
CAediting_1345767chr19_38314742_-SINEAluAluSz6
CAediting_1345768chr19_38314751_-SINEAluAluSz6
CAediting_1345769chr19_38314752_-SINEAluAluSz6
CAediting_1345770chr19_38314758_-SINEAluAluSz6
CAediting_1345771chr19_38314840_-SINEAluAluSz6
CAediting_1345772chr19_38314850_-SINEAluAluSz6
CAediting_1345773chr19_38314885_-SINEAluAluSz6
CAediting_1345774chr19_38314888_-SINEAluAluSz6
CAediting_1345775chr19_38314892_-SINEAluAluSz6
CAediting_1345776chr19_38315015_-SINEAluAluSp
CAediting_1345777chr19_38315123_-SINEAluAluSp
CAediting_1345778chr19_38315133_-SINEAluAluSp
CAediting_1345779chr19_38315137_-SINEAluAluSp
CAediting_1345780chr19_38315162_-SINEAluAluSp
CAediting_1345781chr19_38315163_-SINEAluAluSp
CAediting_1345782chr19_38315193_-SINEAluAluSp
CAediting_1345784chr19_38316249_-SINEAluAluJo
CAediting_1345785chr19_38316288_-SINEAluAluJo
CAediting_1345786chr19_38316289_-SINEAluAluJo
CAediting_1345787chr19_38316309_-SINEAluAluJo
CAediting_1345788chr19_38316421_-SINEAluAluJo
CAediting_1345789chr19_38316445_-SINEAluAluJo
CAediting_1345791chr19_38316772_-SINEAluAluJo
CAediting_1345792chr19_38316782_-SINEAluAluJo
CAediting_1345793chr19_38316789_-SINEAluAluJo
CAediting_1345794chr19_38316884_-SINEAluAluJo
CAediting_1345795chr19_38316885_-SINEAluAluJo
CAediting_1345796chr19_38316888_-SINEAluAluJo
CAediting_1345797chr19_38316893_-SINEAluAluJo
CAediting_1345798chr19_38316907_-SINEAluAluJo
CAediting_1345799chr19_38316910_-SINEAluAluJo
CAediting_1345800chr19_38316917_-SINEAluAluJo
CAediting_1345801chr19_38316920_-SINEAluAluJo
CAediting_1345802chr19_38316927_-SINEAluAluJo
CAediting_1345803chr19_38316933_-SINEAluAluJo

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RNA A-to-I editing events in the alternative splicing sites for YIF1B

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_1345688chr19_38306907_-38306907:383069155SS0+6iAGGTCAGGA-9.81AGGTCAGGG-10.49
ESCAediting_1345691chr19_38306953_-38306944:383069663SS0+7iGCTCATGCTTGTAATCCCAGCAC1.11GCTCATGCTTGTAGTCCCAGCAC-3.48
IRCAediting_1345691chr19_38306953_-38306944:383069663SS0+7iGCTCATGCTTGTAATCCCAGCAC1.11GCTCATGCTTGTAGTCCCAGCAC-3.48
ESCAediting_1345692chr19_38306954_-38306944:383069663SS0+8iGCTCATGCTTGTAATCCCAGCAC1.11GCTCATGCTTGTGATCCCAGCAC1.61
IRCAediting_1345692chr19_38306954_-38306944:383069663SS0+8iGCTCATGCTTGTAATCCCAGCAC1.11GCTCATGCTTGTGATCCCAGCAC1.61
ESCAediting_1345693chr19_38306962_-38306944:383069663SS0+16iGCTCATGCTTGTAATCCCAGCAC1.11GCTCGTGCTTGTAATCCCAGCAC1.81
IRCAediting_1345693chr19_38306962_-38306944:383069663SS0+16iGCTCATGCTTGTAATCCCAGCAC1.11GCTCGTGCTTGTAATCCCAGCAC1.81

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000167645.15.YIF1B.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000167645.15.YIF1B.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for YIF1B

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for YIF1B

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for YIF1B

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1345682chr19_38306810_-ENSG00000167645.15ENST00000591755hsa-miR-1207-3p38306810383068167mer-m83830680938306827145.00-13.53
CAediting_1345682chr19_38306810_-ENSG00000167645.15ENST00000591755hsa-miR-64638306808383068147mer-m83830680738306826148.00-21.05

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1345684chr19_38306846_-ENSG00000167645.15ENST00000591755hsa-miR-4735-5p38306845383068517mer-m83830684438306865140-4.28
CAediting_1345682chr19_38306810_-ENSG00000167645.15ENST00000591755hsa-miR-6869-5p38306806383068127mer-m83830680538306829153-22.99
CAediting_1345683chr19_38306820_-ENSG00000167645.15ENST00000591755hsa-miR-7151-3p38306820383068267mer-m83830681938306839140-17.08
CAediting_1345683chr19_38306820_-ENSG00000167645.15ENST00000591755hsa-miR-805238306814383068207mer-1a3830681438306834141-21.1

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000167645.15ENST00000592694hsa-miR-624-3p38305255383052617mer-m83830525438305274140-15.43
CAediting_980496chr14_31014685_-ENSG00000167645.15ENST00000337679hsa-miR-624-3p38305255383052617mer-m83830525438305274140-15.43
CAediting_980496chr14_31014685_-ENSG00000167645.15ENST00000392124hsa-miR-624-3p38305255383052617mer-m83830525438305274140-15.43
CAediting_980496chr14_31014685_-ENSG00000167645.15ENST00000592246hsa-miR-624-3p38305255383052617mer-m83830525438305274140-15.43
CAediting_1054808chr15_66496985_-ENSG00000167645.15ENST00000592694hsa-miR-451238305268383052758mer-1a3830526838305290141-15.6
CAediting_86358chr1_109598906_+ENSG00000167645.15ENST00000592694hsa-miR-197-5p38305258383052647mer-m83830525738305283147-26.09
CAediting_1054808chr15_66496985_-ENSG00000167645.15ENST00000337679hsa-miR-451238305268383052758mer-1a3830526838305290141-15.6
CAediting_86358chr1_109598906_+ENSG00000167645.15ENST00000337679hsa-miR-197-5p38305258383052647mer-m83830525738305283147-26.09
CAediting_1054808chr15_66496985_-ENSG00000167645.15ENST00000392124hsa-miR-451238305268383052758mer-1a3830526838305290141-15.6
CAediting_86358chr1_109598906_+ENSG00000167645.15ENST00000392124hsa-miR-197-5p38305258383052647mer-m83830525738305283147-26.09
CAediting_1054808chr15_66496985_-ENSG00000167645.15ENST00000592246hsa-miR-451238305268383052758mer-1a3830526838305290141-15.6
CAediting_86358chr1_109598906_+ENSG00000167645.15ENST00000592246hsa-miR-197-5p38305258383052647mer-m83830525738305283147-26.09

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for YIF1B

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for YIF1B

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for YIF1B

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for YIF1B

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for YIF1B

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for YIF1B

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource