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Editing gene: TMEM41A (CAeditome ID:90407)

Gene summary for TMEM41A

Gene summary

Gene information	Gene symbol	TMEM41A
	Gene ID	90407
	Gene name	transmembrane protein 41A
	Synonyms	2900010K02Rik
	Cytomap	3q27.2
	Type of gene	protein-coding
	Description	transmembrane protein 41A
	Modification date	20210518
	UniProtAcc	Q96HV5
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for TMEM41A

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000163900.9

RNA A-to-I editing events in Cancer.

CAediting_330235(185490994, -), CAediting_330236(185490996, -), CAediting_330237(185491055, -), CAediting_330238(185491058, -), CAediting_330239(185491060, -), CAediting_330240(185491063, -), CAediting_330241(185491065, -), CAediting_330242(185491066, -), CAediting_330243(185491070, -), CAediting_330244(185491083, -), CAediting_330245(185491090, -), CAediting_330246(185491126, -), CAediting_330247(185491130, -), CAediting_330248(185491158, -), CAediting_330249(185491162, -), CAediting_330250(185491165, -), CAediting_330251(185491168, -), CAediting_330252(185491174, -), CAediting_330253(185491179, -), CAediting_330254(185491180, -), CAediting_330255(185491191, -), CAediting_330256(185491201, -), CAediting_330257(185491214, -), CAediting_330258(185491216, -), CAediting_330259(185491217, -), CAediting_330260(185491225, -), CAediting_330261(185491230, -), CAediting_330262(185491231, -), CAediting_330263(185491252, -), CAediting_330264(185491268, -), CAediting_330265(185491269, -), CAediting_330266(185491277, -), CAediting_330267(185492041, -), CAediting_330268(185492043, -), CAediting_330269(185492046, -), CAediting_330270(185492097, -), CAediting_330271(185492122, -), CAediting_330272(185492136, -), CAediting_330273(185492180, -), CAediting_330274(185492190, -), CAediting_330275(185492296, -), CAediting_330276(185493564, -), CAediting_330277(185493577, -), CAediting_330278(185493615, -), CAediting_330279(185493638, -), CAediting_330280(185493673, -), CAediting_330281(185493678, -), CAediting_330282(185493679, -), CAediting_330283(185493705, -), CAediting_330284(185493708, -), CAediting_330285(185493709, -), CAediting_330286(185493729, -), CAediting_330287(185493734, -), CAediting_330288(185493735, -), CAediting_330289(185493759, -), CAediting_330290(185493760, -), CAediting_330291(185493820, -), CAediting_330292(185493822, -), CAediting_330293(185495538, -), CAediting_330294(185495659, -), CAediting_330295(185495715, -),

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RNA editing positional annotations for TMEM41A using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_330235	chr3_185490994_-	ncRNA_intronic
CAediting_330236	chr3_185490996_-	ncRNA_intronic
CAediting_330237	chr3_185491055_-	ncRNA_intronic
CAediting_330238	chr3_185491058_-	ncRNA_intronic
CAediting_330239	chr3_185491060_-	ncRNA_intronic
CAediting_330240	chr3_185491063_-	ncRNA_intronic
CAediting_330241	chr3_185491065_-	ncRNA_intronic
CAediting_330242	chr3_185491066_-	ncRNA_intronic
CAediting_330243	chr3_185491070_-	ncRNA_intronic
CAediting_330244	chr3_185491083_-	ncRNA_intronic
CAediting_330245	chr3_185491090_-	ncRNA_intronic
CAediting_330246	chr3_185491126_-	ncRNA_intronic
CAediting_330247	chr3_185491130_-	ncRNA_intronic
CAediting_330248	chr3_185491158_-	ncRNA_intronic
CAediting_330249	chr3_185491162_-	ncRNA_intronic
CAediting_330250	chr3_185491165_-	ncRNA_intronic
CAediting_330251	chr3_185491168_-	ncRNA_intronic
CAediting_330252	chr3_185491174_-	ncRNA_intronic
CAediting_330253	chr3_185491179_-	ncRNA_intronic
CAediting_330254	chr3_185491180_-	ncRNA_intronic
CAediting_330255	chr3_185491191_-	ncRNA_intronic
CAediting_330256	chr3_185491201_-	ncRNA_intronic
CAediting_330257	chr3_185491214_-	ncRNA_intronic
CAediting_330258	chr3_185491216_-	ncRNA_intronic
CAediting_330259	chr3_185491217_-	ncRNA_intronic
CAediting_330260	chr3_185491225_-	ncRNA_intronic
CAediting_330261	chr3_185491230_-	ncRNA_intronic
CAediting_330262	chr3_185491231_-	ncRNA_intronic
CAediting_330263	chr3_185491252_-	ncRNA_intronic
CAediting_330264	chr3_185491268_-	ncRNA_intronic
CAediting_330265	chr3_185491269_-	ncRNA_intronic
CAediting_330266	chr3_185491277_-	ncRNA_intronic
CAediting_330267	chr3_185492041_-	ncRNA_intronic
CAediting_330268	chr3_185492043_-	ncRNA_intronic
CAediting_330269	chr3_185492046_-	ncRNA_intronic
CAediting_330270	chr3_185492097_-	ncRNA_intronic
CAediting_330271	chr3_185492122_-	ncRNA_intronic
CAediting_330272	chr3_185492136_-	ncRNA_intronic
CAediting_330273	chr3_185492180_-	ncRNA_intronic
CAediting_330274	chr3_185492190_-	ncRNA_intronic
CAediting_330275	chr3_185492296_-	ncRNA_exonic
CAediting_330276	chr3_185493564_-	ncRNA_exonic
CAediting_330277	chr3_185493577_-	ncRNA_exonic
CAediting_330278	chr3_185493615_-	ncRNA_exonic
CAediting_330279	chr3_185493638_-	ncRNA_exonic
CAediting_330280	chr3_185493673_-	ncRNA_exonic
CAediting_330281	chr3_185493678_-	ncRNA_exonic
CAediting_330282	chr3_185493679_-	ncRNA_exonic
CAediting_330283	chr3_185493705_-	ncRNA_exonic
CAediting_330284	chr3_185493708_-	ncRNA_exonic
CAediting_330285	chr3_185493709_-	ncRNA_exonic
CAediting_330286	chr3_185493729_-	ncRNA_exonic
CAediting_330287	chr3_185493734_-	ncRNA_exonic
CAediting_330288	chr3_185493735_-	ncRNA_exonic
CAediting_330289	chr3_185493759_-	ncRNA_exonic
CAediting_330290	chr3_185493760_-	ncRNA_exonic
CAediting_330291	chr3_185493820_-	ncRNA_exonic
CAediting_330292	chr3_185493822_-	ncRNA_exonic
CAediting_330293	chr3_185495538_-	ncRNA_exonic
CAediting_330294	chr3_185495659_-	ncRNA_exonic
CAediting_330295	chr3_185495715_-	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_330235	chr3_185490994_-	SINE	Alu	AluSg7
CAediting_330236	chr3_185490996_-	SINE	Alu	AluSg7
CAediting_330237	chr3_185491055_-	SINE	Alu	AluSg7
CAediting_330238	chr3_185491058_-	SINE	Alu	AluSg7
CAediting_330239	chr3_185491060_-	SINE	Alu	AluSg7
CAediting_330240	chr3_185491063_-	SINE	Alu	AluSg7
CAediting_330241	chr3_185491065_-	SINE	Alu	AluSg7
CAediting_330242	chr3_185491066_-	SINE	Alu	AluSg7
CAediting_330243	chr3_185491070_-	SINE	Alu	AluSg7
CAediting_330244	chr3_185491083_-	SINE	Alu	AluSg7
CAediting_330245	chr3_185491090_-	SINE	Alu	AluSg7
CAediting_330246	chr3_185491126_-	SINE	Alu	AluSg7
CAediting_330247	chr3_185491130_-	SINE	Alu	AluSg7
CAediting_330248	chr3_185491158_-	SINE	Alu	AluSg7
CAediting_330249	chr3_185491162_-	SINE	Alu	AluSg7
CAediting_330250	chr3_185491165_-	SINE	Alu	AluSg7
CAediting_330251	chr3_185491168_-	SINE	Alu	AluSg7
CAediting_330252	chr3_185491174_-	SINE	Alu	AluSg7
CAediting_330253	chr3_185491179_-	SINE	Alu	AluSg7
CAediting_330254	chr3_185491180_-	SINE	Alu	AluSg7
CAediting_330255	chr3_185491191_-	SINE	Alu	AluSg7
CAediting_330256	chr3_185491201_-	SINE	Alu	AluSg7
CAediting_330257	chr3_185491214_-	SINE	Alu	AluSg7
CAediting_330258	chr3_185491216_-	SINE	Alu	AluSg7
CAediting_330259	chr3_185491217_-	SINE	Alu	AluSg7
CAediting_330260	chr3_185491225_-	SINE	Alu	AluSg7
CAediting_330261	chr3_185491230_-	SINE	Alu	AluSg7
CAediting_330262	chr3_185491231_-	SINE	Alu	AluSg7
CAediting_330263	chr3_185491252_-	SINE	Alu	AluSg7
CAediting_330264	chr3_185491268_-	SINE	Alu	AluSg7
CAediting_330265	chr3_185491269_-	SINE	Alu	AluSg7
CAediting_330266	chr3_185491277_-	SINE	Alu	AluSg7
CAediting_330267	chr3_185492041_-	SINE	Alu	AluSx
CAediting_330268	chr3_185492043_-	SINE	Alu	AluSx
CAediting_330269	chr3_185492046_-	SINE	Alu	AluSx
CAediting_330270	chr3_185492097_-	SINE	Alu	AluSx
CAediting_330271	chr3_185492122_-	SINE	Alu	AluSx
CAediting_330272	chr3_185492136_-	SINE	Alu	AluSx
CAediting_330273	chr3_185492180_-	SINE	Alu	AluSx
CAediting_330274	chr3_185492190_-	SINE	Alu	AluSx
CAediting_330275	chr3_185492296_-	SINE	Alu	AluSx
CAediting_330276	chr3_185493564_-	SINE	Alu	AluSz
CAediting_330277	chr3_185493577_-	SINE	Alu	AluSz
CAediting_330278	chr3_185493615_-	SINE	Alu	AluSz
CAediting_330279	chr3_185493638_-	SINE	Alu	AluSz
CAediting_330280	chr3_185493673_-	SINE	Alu	AluSz
CAediting_330281	chr3_185493678_-	SINE	Alu	AluSz
CAediting_330282	chr3_185493679_-	SINE	Alu	AluSz
CAediting_330283	chr3_185493705_-	SINE	Alu	AluSz
CAediting_330284	chr3_185493708_-	SINE	Alu	AluSz
CAediting_330285	chr3_185493709_-	SINE	Alu	AluSz
CAediting_330286	chr3_185493729_-	SINE	Alu	AluSz
CAediting_330287	chr3_185493734_-	SINE	Alu	AluSz
CAediting_330288	chr3_185493735_-	SINE	Alu	AluSz
CAediting_330289	chr3_185493759_-	SINE	Alu	AluSz
CAediting_330290	chr3_185493760_-	SINE	Alu	AluSz
CAediting_330291	chr3_185493820_-	SINE	Alu	AluSz
CAediting_330292	chr3_185493822_-	SINE	Alu	AluSz
CAediting_330293	chr3_185495538_-	SINE	Alu	AluJr4
CAediting_330294	chr3_185495659_-	SINE	Alu	AluJr4
CAediting_330295	chr3_185495715_-	SINE	Alu	AluJr4

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RNA A-to-I editing events in the alternative splicing sites for TMEM41A

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000163900.9.TMEM41A.

Correlation between RNA A-to-I editing and PSI for ENSG00000163900.9.TMEM41A.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TMEM41A

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TMEM41A

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TMEM41A

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_330235	chr3_185490994_-	ENSG00000163900.9	ENST00000421852	hsa-miR-204-5p	185490991	185490998	8mer-1a	185490991	185491012	142.00	-10.74
CAediting_330235	chr3_185490994_-	ENSG00000163900.9	ENST00000421852	hsa-miR-211-5p	185490991	185490998	8mer-1a	185490991	185491012	145.00	-10.74
CAediting_330235	chr3_185490994_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4446-5p	185490989	185490996	8mer-1a	185490989	185491010	140.00	-12.75
CAediting_330235	chr3_185490994_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4755-5p	185490990	185490997	8mer-1a	185490990	185491011	140.00	-12.37
CAediting_330235	chr3_185490994_-	ENSG00000163900.9	ENST00000421852	hsa-miR-5006-3p	185490990	185490997	8mer-1a	185490990	185491010	145.00	-12.16
CAediting_330235	chr3_185490994_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6832-3p	185490992	185490999	8mer-1a	185490992	185491011	159.00	-9.61
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000421852	hsa-miR-3190-5p	185491157	185491163	7mer-m8	185491156	185491175	143.00	-16.24
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000421852	hsa-miR-548s	185491158	185491164	7mer-m8	185491157	185491179	145.00	-11.19
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000296254	hsa-miR-3190-5p	185491157	185491163	7mer-m8	185491156	185491175	143.00	-16.24
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000296254	hsa-miR-548s	185491158	185491164	7mer-m8	185491157	185491179	145.00	-11.19
CAediting_330242	chr3_185491066_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4638-5p	185491063	185491070	8mer-1a	185491063	185491084	144.00	-16.16
CAediting_330242	chr3_185491066_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4638-5p	185491063	185491070	8mer-1a	185491063	185491084	144.00	-16.16
CAediting_330243	chr3_185491070_-	ENSG00000163900.9	ENST00000421852	hsa-miR-24-1-5p	185491068	185491074	7mer-m8	185491067	185491089	155.00	-20.04
CAediting_330243	chr3_185491070_-	ENSG00000163900.9	ENST00000421852	hsa-miR-24-2-5p	185491068	185491074	7mer-m8	185491067	185491089	148.00	-22.15
CAediting_330243	chr3_185491070_-	ENSG00000163900.9	ENST00000296254	hsa-miR-24-1-5p	185491068	185491074	7mer-m8	185491067	185491089	155.00	-20.04
CAediting_330243	chr3_185491070_-	ENSG00000163900.9	ENST00000296254	hsa-miR-24-2-5p	185491068	185491074	7mer-m8	185491067	185491089	148.00	-22.15
CAediting_330244	chr3_185491083_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6084	185491081	185491087	7mer-m8	185491080	185491100	145.00	-21.14
CAediting_330244	chr3_185491083_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6084	185491081	185491087	7mer-m8	185491080	185491100	145.00	-21.14
CAediting_330246	chr3_185491126_-	ENSG00000163900.9	ENST00000421852	hsa-miR-1207-3p	185491126	185491132	7mer-m8	185491125	185491142	140.00	-12.56
CAediting_330246	chr3_185491126_-	ENSG00000163900.9	ENST00000421852	hsa-miR-646	185491124	185491130	7mer-m8	185491123	185491141	145.00	-14.99
CAediting_330246	chr3_185491126_-	ENSG00000163900.9	ENST00000296254	hsa-miR-1207-3p	185491126	185491132	7mer-m8	185491125	185491142	140.00	-12.56
CAediting_330246	chr3_185491126_-	ENSG00000163900.9	ENST00000296254	hsa-miR-646	185491124	185491130	7mer-m8	185491123	185491141	145.00	-14.99
CAediting_330251	chr3_185491168_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4742-3p	185491167	185491174	8mer-1a	185491167	185491189	148.00	-11.97
CAediting_330251	chr3_185491168_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4742-3p	185491167	185491174	8mer-1a	185491167	185491189	148.00	-11.97
CAediting_330253	chr3_185491179_-	ENSG00000163900.9	ENST00000421852	hsa-miR-520g-5p	185491179	185491184	6mer	185491178	185491201	144.00	-15.96
CAediting_330253	chr3_185491179_-	ENSG00000163900.9	ENST00000296254	hsa-miR-520g-5p	185491179	185491184	6mer	185491178	185491201	144.00	-15.96
CAediting_330254	chr3_185491180_-	ENSG00000163900.9	ENST00000421852	hsa-miR-361-5p	185491176	185491183	8mer-1a	185491176	185491197	140.00	-19.05
CAediting_330254	chr3_185491180_-	ENSG00000163900.9	ENST00000421852	hsa-miR-374a-3p	185491175	185491182	8mer-1a	185491175	185491198	150.00	-8.27
CAediting_330254	chr3_185491180_-	ENSG00000163900.9	ENST00000296254	hsa-miR-361-5p	185491176	185491183	8mer-1a	185491176	185491197	140.00	-19.05
CAediting_330254	chr3_185491180_-	ENSG00000163900.9	ENST00000296254	hsa-miR-374a-3p	185491175	185491182	8mer-1a	185491175	185491198	150.00	-8.27
CAediting_330255	chr3_185491191_-	ENSG00000163900.9	ENST00000421852	hsa-miR-412-3p	185491191	185491197	7mer-m8	185491190	185491212	145.00	-18.74
CAediting_330255	chr3_185491191_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6754-3p	185491191	185491197	7mer-m8	185491190	185491210	150.00	-18.82
CAediting_330255	chr3_185491191_-	ENSG00000163900.9	ENST00000421852	hsa-miR-8083	185491187	185491193	7mer-m8	185491186	185491206	147.00	-18.76
CAediting_330255	chr3_185491191_-	ENSG00000163900.9	ENST00000296254	hsa-miR-412-3p	185491191	185491197	7mer-m8	185491190	185491212	145.00	-18.74
CAediting_330255	chr3_185491191_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6754-3p	185491191	185491197	7mer-m8	185491190	185491210	150.00	-18.82
CAediting_330255	chr3_185491191_-	ENSG00000163900.9	ENST00000296254	hsa-miR-8083	185491187	185491193	7mer-m8	185491186	185491206	147.00	-18.76
CAediting_330257	chr3_185491214_-	ENSG00000163900.9	ENST00000421852	hsa-miR-3176	185491210	185491216	7mer-m8	185491209	185491227	160.00	-23.34
CAediting_330257	chr3_185491214_-	ENSG00000163900.9	ENST00000421852	hsa-miR-3922-3p	185491210	185491216	7mer-m8	185491209	185491233	167.00	-28.45
CAediting_330257	chr3_185491214_-	ENSG00000163900.9	ENST00000296254	hsa-miR-3176	185491210	185491216	7mer-m8	185491209	185491227	160.00	-23.34
CAediting_330257	chr3_185491214_-	ENSG00000163900.9	ENST00000296254	hsa-miR-3922-3p	185491210	185491216	7mer-m8	185491209	185491233	167.00	-28.45
CAediting_330258	chr3_185491216_-	ENSG00000163900.9	ENST00000421852	hsa-miR-12113	185491216	185491222	7mer-m8	185491215	185491235	147.00	-17.77
CAediting_330258	chr3_185491216_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4539	185491216	185491222	7mer-m8	185491215	185491234	153.00	-17.97
CAediting_330258	chr3_185491216_-	ENSG00000163900.9	ENST00000296254	hsa-miR-12113	185491216	185491222	7mer-m8	185491215	185491235	147.00	-17.77
CAediting_330258	chr3_185491216_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4539	185491216	185491222	7mer-m8	185491215	185491234	153.00	-17.97
CAediting_330261	chr3_185491230_-	ENSG00000163900.9	ENST00000421852	hsa-miR-10a-5p	185491227	185491233	7mer-m8	185491226	185491250	156.00	-22.62
CAediting_330261	chr3_185491230_-	ENSG00000163900.9	ENST00000421852	hsa-miR-10b-5p	185491227	185491233	7mer-m8	185491226	185491250	156.00	-23.07
CAediting_330261	chr3_185491230_-	ENSG00000163900.9	ENST00000421852	hsa-miR-146b-3p	185491228	185491234	7mer-m8	185491227	185491249	154.00	-24.45
CAediting_330261	chr3_185491230_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4725-5p	185491225	185491232	8mer-1a	185491225	185491245	140.00	-16.25
CAediting_330261	chr3_185491230_-	ENSG00000163900.9	ENST00000421852	hsa-miR-504-5p	185491225	185491232	8mer-1a	185491225	185491246	142.00	-18.23
CAediting_330261	chr3_185491230_-	ENSG00000163900.9	ENST00000296254	hsa-miR-10a-5p	185491227	185491233	7mer-m8	185491226	185491250	156.00	-22.62
CAediting_330261	chr3_185491230_-	ENSG00000163900.9	ENST00000296254	hsa-miR-10b-5p	185491227	185491233	7mer-m8	185491226	185491250	156.00	-23.07
CAediting_330261	chr3_185491230_-	ENSG00000163900.9	ENST00000296254	hsa-miR-146b-3p	185491228	185491234	7mer-m8	185491227	185491249	154.00	-24.45
CAediting_330261	chr3_185491230_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4725-5p	185491225	185491232	8mer-1a	185491225	185491245	140.00	-16.25
CAediting_330261	chr3_185491230_-	ENSG00000163900.9	ENST00000296254	hsa-miR-504-5p	185491225	185491232	8mer-1a	185491225	185491246	142.00	-18.23
CAediting_330262	chr3_185491231_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6790-3p	185491225	185491232	8mer-1a	185491225	185491245	145.00	-16.86
CAediting_330262	chr3_185491231_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6790-3p	185491225	185491232	8mer-1a	185491225	185491245	145.00	-16.86
CAediting_330264	chr3_185491268_-	ENSG00000163900.9	ENST00000421852	hsa-miR-8052	185491263	185491269	7mer-1a	185491263	185491281	140.00	-24.15
CAediting_330264	chr3_185491268_-	ENSG00000163900.9	ENST00000296254	hsa-miR-8052	185491263	185491269	7mer-1a	185491263	185491281	140.00	-24.15
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000421852	hsa-miR-513a-5p	185491268	185491274	7mer-m8	185491267	185491284	144.00	-16.68
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000421852	hsa-miR-513a-5p	185491268	185491274	7mer-m8	185491267	185491284	144.00	-16.68
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000421852	hsa-miR-638	185491263	185491269	7mer-1a	185491263	185491287	159.00	-35.56
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000296254	hsa-miR-513a-5p	185491268	185491274	7mer-m8	185491267	185491284	144.00	-16.68
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000296254	hsa-miR-513a-5p	185491268	185491274	7mer-m8	185491267	185491284	144.00	-16.68
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000296254	hsa-miR-638	185491263	185491269	7mer-1a	185491263	185491287	159.00	-35.56
CAediting_330266	chr3_185491277_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4634	185491273	185491279	7mer-m8	185491272	185491295	155.00	-34.29
CAediting_330266	chr3_185491277_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4634	185491273	185491279	7mer-m8	185491272	185491295	155.00	-34.29
CAediting_330240	chr3_185491063_-	ENSG00000163900.9	ENST00000421852	hsa-miR-212-5p	185491063	185491069	7mer-m8	185491062	185491081	153.00	-24.34
CAediting_330240	chr3_185491063_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6808-3p	185491058	185491064	7mer-m8	185491057	185491078	154.00	-22.85
CAediting_330240	chr3_185491063_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6813-3p	185491062	185491068	7mer-m8	185491061	185491081	145.00	-16.67
CAediting_330240	chr3_185491063_-	ENSG00000163900.9	ENST00000296254	hsa-miR-212-5p	185491063	185491069	7mer-m8	185491062	185491081	153.00	-24.34
CAediting_330240	chr3_185491063_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6808-3p	185491058	185491064	7mer-m8	185491057	185491078	154.00	-22.85
CAediting_330240	chr3_185491063_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6813-3p	185491062	185491068	7mer-m8	185491061	185491081	145.00	-16.67
CAediting_330245	chr3_185491090_-	ENSG00000163900.9	ENST00000421852	hsa-miR-3620-3p	185491086	185491092	7mer-m8	185491085	185491106	153.00	-18.60
CAediting_330245	chr3_185491090_-	ENSG00000163900.9	ENST00000296254	hsa-miR-3620-3p	185491086	185491092	7mer-m8	185491085	185491106	153.00	-18.60
CAediting_330256	chr3_185491201_-	ENSG00000163900.9	ENST00000421852	hsa-miR-3190-5p	185491201	185491207	7mer-m8	185491200	185491219	152.00	-21.42
CAediting_330256	chr3_185491201_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4793-5p	185491197	185491203	7mer-m8	185491196	185491220	144.00	-19.81
CAediting_330256	chr3_185491201_-	ENSG00000163900.9	ENST00000296254	hsa-miR-3190-5p	185491201	185491207	7mer-m8	185491200	185491219	152.00	-21.42
CAediting_330256	chr3_185491201_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4793-5p	185491197	185491203	7mer-m8	185491196	185491220	144.00	-19.81
CAediting_330263	chr3_185491252_-	ENSG00000163900.9	ENST00000421852	hsa-miR-10392-3p	185491246	185491253	8mer-1a	185491246	185491270	144.00	-22.69
CAediting_330263	chr3_185491252_-	ENSG00000163900.9	ENST00000296254	hsa-miR-10392-3p	185491246	185491253	8mer-1a	185491246	185491270	144.00	-22.69

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_330264	chr3_185491268_-	ENSG00000163900.9	ENST00000421852	hsa-miR-10399-5p	185491267	185491273	7mer-m8	185491266	185491287	144	-11.2
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000421852	hsa-miR-10399-5p	185491267	185491273	7mer-m8	185491266	185491287	144	-11.2
CAediting_330235	chr3_185490994_-	ENSG00000163900.9	ENST00000421852	hsa-miR-130a-5p	185490992	185490999	8mer-1a	185490992	185491013	140	-7.11
CAediting_330236	chr3_185490996_-	ENSG00000163900.9	ENST00000421852	hsa-miR-130a-5p	185490992	185490999	8mer-1a	185490992	185491013	140	-7.11
CAediting_330263	chr3_185491252_-	ENSG00000163900.9	ENST00000421852	hsa-miR-150-5p	185491251	185491257	7mer-m8	185491250	185491271	140	-15.8
CAediting_330248	chr3_185491158_-	ENSG00000163900.9	ENST00000421852	hsa-miR-3064-5p	185491157	185491162	6mer	185491156	185491177	140	-17.25
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000421852	hsa-miR-3064-5p	185491157	185491162	6mer	185491156	185491177	140	-17.25
CAediting_330255	chr3_185491191_-	ENSG00000163900.9	ENST00000421852	hsa-miR-3167	185491188	185491194	7mer-m8	185491187	185491207	150	-17.54
CAediting_330257	chr3_185491214_-	ENSG00000163900.9	ENST00000421852	hsa-miR-3663-5p	185491210	185491216	7mer-m8	185491209	185491225	141	-19.69
CAediting_330260	chr3_185491225_-	ENSG00000163900.9	ENST00000421852	hsa-miR-378a-5p	185491222	185491228	7mer-m8	185491221	185491242	141	-19.76
CAediting_330244	chr3_185491083_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4727-5p	185491081	185491087	7mer-m8	185491080	185491100	152	-16.22
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4735-5p	185491161	185491167	7mer-m8	185491160	185491181	140	-4.28
CAediting_330250	chr3_185491165_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4735-5p	185491161	185491167	7mer-m8	185491160	185491181	140	-4.28
CAediting_330235	chr3_185490994_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4753-3p	185490991	185490998	8mer-1a	185490991	185491012	152	-9.1
CAediting_330236	chr3_185490996_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4753-3p	185490991	185490998	8mer-1a	185490991	185491012	152	-9.1
CAediting_330248	chr3_185491158_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4794	185491157	185491163	7mer-m8	185491156	185491177	140	-12.3
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000421852	hsa-miR-4794	185491157	185491163	7mer-m8	185491156	185491177	140	-12.3
CAediting_330264	chr3_185491268_-	ENSG00000163900.9	ENST00000421852	hsa-miR-5089-5p	185491263	185491269	7mer-m8	185491262	185491284	148	-14.13
CAediting_330247	chr3_185491130_-	ENSG00000163900.9	ENST00000421852	hsa-miR-5089-5p	185491130	185491136	7mer-m8	185491129	185491147	146	-13.74
CAediting_330257	chr3_185491214_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6131	185491209	185491215	7mer-m8	185491208	185491226	140	-17.94
CAediting_330264	chr3_185491268_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6504-3p	185491267	185491273	7mer-m8	185491266	185491287	148	-14.35
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6504-3p	185491267	185491273	7mer-m8	185491266	185491287	148	-14.35
CAediting_330247	chr3_185491130_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6506-5p	185491129	185491135	7mer-m8	185491128	185491150	144	-16.19
CAediting_330248	chr3_185491158_-	ENSG00000163900.9	ENST00000421852	hsa-miR-664a-5p	185491157	185491163	7mer-m8	185491156	185491179	141	-13.02
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000421852	hsa-miR-664a-5p	185491157	185491163	7mer-m8	185491156	185491179	141	-13.02
CAediting_330263	chr3_185491252_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6778-3p	185491249	185491255	7mer-m8	185491248	185491268	143	-13.97
CAediting_330266	chr3_185491277_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6807-5p	185491277	185491283	7mer-m8	185491276	185491298	144	-25.48
CAediting_330235	chr3_185490994_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6809-3p	185490990	185490997	8mer-1a	185490990	185491010	148	-6.29
CAediting_330236	chr3_185490996_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6809-3p	185490990	185490997	8mer-1a	185490990	185491010	148	-6.29
CAediting_330245	chr3_185491090_-	ENSG00000163900.9	ENST00000421852	hsa-miR-6813-3p	185491087	185491093	7mer-m8	185491086	185491106	140	-11.67
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000421852	hsa-miR-7151-3p	185491268	185491275	8mer-1a	185491268	185491288	144	-16.51
CAediting_330238	chr3_185491058_-	ENSG00000163900.9	ENST00000421852	hsa-miR-8070	185491058	185491063	6mer	185491057	185491077	141	-16.87
CAediting_330239	chr3_185491060_-	ENSG00000163900.9	ENST00000421852	hsa-miR-8070	185491058	185491063	6mer	185491057	185491077	141	-16.87
CAediting_330240	chr3_185491063_-	ENSG00000163900.9	ENST00000421852	hsa-miR-8070	185491058	185491063	6mer	185491057	185491077	141	-16.87
CAediting_330255	chr3_185491191_-	ENSG00000163900.9	ENST00000421852	hsa-miR-876-5p	185491188	185491194	7mer-m8	185491187	185491208	145	-11.02
CAediting_330264	chr3_185491268_-	ENSG00000163900.9	ENST00000296254	hsa-miR-10399-5p	185491267	185491273	7mer-m8	185491266	185491287	144	-11.2
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000296254	hsa-miR-10399-5p	185491267	185491273	7mer-m8	185491266	185491287	144	-11.2
CAediting_330263	chr3_185491252_-	ENSG00000163900.9	ENST00000296254	hsa-miR-150-5p	185491251	185491257	7mer-m8	185491250	185491271	140	-15.8
CAediting_330248	chr3_185491158_-	ENSG00000163900.9	ENST00000296254	hsa-miR-3064-5p	185491157	185491162	6mer	185491156	185491177	140	-17.25
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000296254	hsa-miR-3064-5p	185491157	185491162	6mer	185491156	185491177	140	-17.25
CAediting_330255	chr3_185491191_-	ENSG00000163900.9	ENST00000296254	hsa-miR-3167	185491188	185491194	7mer-m8	185491187	185491207	150	-17.54
CAediting_330257	chr3_185491214_-	ENSG00000163900.9	ENST00000296254	hsa-miR-3663-5p	185491210	185491216	7mer-m8	185491209	185491225	141	-19.69
CAediting_330260	chr3_185491225_-	ENSG00000163900.9	ENST00000296254	hsa-miR-378a-5p	185491222	185491228	7mer-m8	185491221	185491242	141	-19.76
CAediting_330244	chr3_185491083_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4727-5p	185491081	185491087	7mer-m8	185491080	185491100	152	-16.22
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4735-5p	185491161	185491167	7mer-m8	185491160	185491181	140	-4.28
CAediting_330250	chr3_185491165_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4735-5p	185491161	185491167	7mer-m8	185491160	185491181	140	-4.28
CAediting_330248	chr3_185491158_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4794	185491157	185491163	7mer-m8	185491156	185491177	140	-12.3
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000296254	hsa-miR-4794	185491157	185491163	7mer-m8	185491156	185491177	140	-12.3
CAediting_330264	chr3_185491268_-	ENSG00000163900.9	ENST00000296254	hsa-miR-5089-5p	185491263	185491269	7mer-m8	185491262	185491284	148	-14.13
CAediting_330247	chr3_185491130_-	ENSG00000163900.9	ENST00000296254	hsa-miR-5089-5p	185491130	185491136	7mer-m8	185491129	185491147	146	-13.74
CAediting_330257	chr3_185491214_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6131	185491209	185491215	7mer-m8	185491208	185491226	140	-17.94
CAediting_330264	chr3_185491268_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6504-3p	185491267	185491273	7mer-m8	185491266	185491287	148	-14.35
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6504-3p	185491267	185491273	7mer-m8	185491266	185491287	148	-14.35
CAediting_330247	chr3_185491130_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6506-5p	185491129	185491135	7mer-m8	185491128	185491150	144	-16.19
CAediting_330248	chr3_185491158_-	ENSG00000163900.9	ENST00000296254	hsa-miR-664a-5p	185491157	185491163	7mer-m8	185491156	185491179	141	-13.02
CAediting_330249	chr3_185491162_-	ENSG00000163900.9	ENST00000296254	hsa-miR-664a-5p	185491157	185491163	7mer-m8	185491156	185491179	141	-13.02
CAediting_330263	chr3_185491252_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6778-3p	185491249	185491255	7mer-m8	185491248	185491268	143	-13.97
CAediting_330266	chr3_185491277_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6807-5p	185491277	185491283	7mer-m8	185491276	185491298	144	-25.48
CAediting_330245	chr3_185491090_-	ENSG00000163900.9	ENST00000296254	hsa-miR-6813-3p	185491087	185491093	7mer-m8	185491086	185491106	140	-11.67
CAediting_330265	chr3_185491269_-	ENSG00000163900.9	ENST00000296254	hsa-miR-7151-3p	185491268	185491275	8mer-1a	185491268	185491288	144	-16.51
CAediting_330238	chr3_185491058_-	ENSG00000163900.9	ENST00000296254	hsa-miR-8070	185491058	185491063	6mer	185491057	185491077	141	-16.87
CAediting_330239	chr3_185491060_-	ENSG00000163900.9	ENST00000296254	hsa-miR-8070	185491058	185491063	6mer	185491057	185491077	141	-16.87
CAediting_330240	chr3_185491063_-	ENSG00000163900.9	ENST00000296254	hsa-miR-8070	185491058	185491063	6mer	185491057	185491077	141	-16.87
CAediting_330255	chr3_185491191_-	ENSG00000163900.9	ENST00000296254	hsa-miR-876-5p	185491188	185491194	7mer-m8	185491187	185491208	145	-11.02

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_86358	chr1_109598906_+	ENSG00000163900.9	ENST00000421852	hsa-miR-197-5p	185489682	185489688	7mer-m8	185489681	185489702	155	-33.59

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1351755	chr19_40282625_-	ENSG00000163900.9	ENST00000421852	hsa-miR-641	185491401	185491406	6mer	185491400	185491425	140	-13.92
CAediting_1351755	chr19_40282625_-	ENSG00000163900.9	ENST00000296254	hsa-miR-641	185491401	185491406	6mer	185491400	185491425	140	-13.92

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TMEM41A

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000421852.4	protein_coding
ENST00000296254.3	protein_coding
ENST00000467061.1	retained_intron

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_330235	ENST00000421852.4	chr3_185490994_-	-941.80	-941.80	-978.50
CAediting_330236	ENST00000421852.4	chr3_185490996_-	-941.80	-941.80	-978.50
CAediting_330237	ENST00000421852.4	chr3_185491055_-	-943.00	-941.80	-978.50
CAediting_330238	ENST00000421852.4	chr3_185491058_-	-941.90	-941.80	-978.50
CAediting_330239	ENST00000421852.4	chr3_185491060_-	-941.40	-941.80	-978.50
CAediting_330240	ENST00000421852.4	chr3_185491063_-	-942.10	-941.80	-978.50
CAediting_330241	ENST00000421852.4	chr3_185491065_-	-941.50	-941.80	-978.50
CAediting_330242	ENST00000421852.4	chr3_185491066_-	-942.20	-941.80	-978.50
CAediting_330243	ENST00000421852.4	chr3_185491070_-	-942.30	-941.80	-978.50
CAediting_330244	ENST00000421852.4	chr3_185491083_-	-942.10	-941.80	-978.50
CAediting_330245	ENST00000421852.4	chr3_185491090_-	-944.30	-941.80	-978.50
CAediting_330246	ENST00000421852.4	chr3_185491126_-	-942.20	-941.80	-978.50
CAediting_330247	ENST00000421852.4	chr3_185491130_-	-943.30	-941.80	-978.50
CAediting_330248	ENST00000421852.4	chr3_185491158_-	-941.10	-941.80	-978.50
CAediting_330249	ENST00000421852.4	chr3_185491162_-	-947.70	-941.80	-978.50
CAediting_330250	ENST00000421852.4	chr3_185491165_-	-941.80	-941.80	-978.50
CAediting_330251	ENST00000421852.4	chr3_185491168_-	-941.90	-941.80	-978.50
CAediting_330252	ENST00000421852.4	chr3_185491174_-	-943.10	-941.80	-978.50
CAediting_330253	ENST00000421852.4	chr3_185491179_-	-943.20	-941.80	-978.50
CAediting_330254	ENST00000421852.4	chr3_185491180_-	-942.60	-941.80	-978.50
CAediting_330255	ENST00000421852.4	chr3_185491191_-	-941.80	-941.80	-978.50
CAediting_330256	ENST00000421852.4	chr3_185491201_-	-947.10	-941.80	-978.50
CAediting_330257	ENST00000421852.4	chr3_185491214_-	-944.20	-941.80	-978.50
CAediting_330258	ENST00000421852.4	chr3_185491216_-	-941.90	-941.80	-978.50
CAediting_330259	ENST00000421852.4	chr3_185491217_-	-941.50	-941.80	-978.50
CAediting_330260	ENST00000421852.4	chr3_185491225_-	-941.80	-941.80	-978.50
CAediting_330261	ENST00000421852.4	chr3_185491230_-	-943.00	-941.80	-978.50
CAediting_330262	ENST00000421852.4	chr3_185491231_-	-941.80	-941.80	-978.50
CAediting_330263	ENST00000421852.4	chr3_185491252_-	-940.90	-941.80	-978.50
CAediting_330264	ENST00000421852.4	chr3_185491268_-	-943.30	-941.80	-978.50
CAediting_330265	ENST00000421852.4	chr3_185491269_-	-943.30	-941.80	-978.50
CAediting_330266	ENST00000421852.4	chr3_185491277_-	-947.20	-941.80	-978.50
CAediting_330237	ENST00000296254.3	chr3_185491055_-	-382.90	-382.30	-421.30
CAediting_330238	ENST00000296254.3	chr3_185491058_-	-383.10	-382.30	-421.30
CAediting_330239	ENST00000296254.3	chr3_185491060_-	-382.40	-382.30	-421.30
CAediting_330240	ENST00000296254.3	chr3_185491063_-	-386.20	-382.30	-421.30
CAediting_330241	ENST00000296254.3	chr3_185491065_-	-386.20	-382.30	-421.30
CAediting_330242	ENST00000296254.3	chr3_185491066_-	-383.30	-382.30	-421.30
CAediting_330243	ENST00000296254.3	chr3_185491070_-	-382.80	-382.30	-421.30
CAediting_330244	ENST00000296254.3	chr3_185491083_-	-384.90	-382.30	-421.30
CAediting_330245	ENST00000296254.3	chr3_185491090_-	-384.30	-382.30	-421.30
CAediting_330246	ENST00000296254.3	chr3_185491126_-	-381.90	-382.30	-421.30
CAediting_330247	ENST00000296254.3	chr3_185491130_-	-385.20	-382.30	-421.30
CAediting_330248	ENST00000296254.3	chr3_185491158_-	-385.30	-382.30	-421.30
CAediting_330249	ENST00000296254.3	chr3_185491162_-	-388.20	-382.30	-421.30
CAediting_330250	ENST00000296254.3	chr3_185491165_-	-382.30	-382.30	-421.30
CAediting_330251	ENST00000296254.3	chr3_185491168_-	-382.40	-382.30	-421.30
CAediting_330252	ENST00000296254.3	chr3_185491174_-	-383.60	-382.30	-421.30
CAediting_330253	ENST00000296254.3	chr3_185491179_-	-383.70	-382.30	-421.30
CAediting_330254	ENST00000296254.3	chr3_185491180_-	-383.10	-382.30	-421.30
CAediting_330255	ENST00000296254.3	chr3_185491191_-	-386.90	-382.30	-421.30
CAediting_330256	ENST00000296254.3	chr3_185491201_-	-387.60	-382.30	-421.30
CAediting_330257	ENST00000296254.3	chr3_185491214_-	-382.40	-382.30	-421.30
CAediting_330258	ENST00000296254.3	chr3_185491216_-	-382.40	-382.30	-421.30
CAediting_330259	ENST00000296254.3	chr3_185491217_-	-382.30	-382.30	-421.30
CAediting_330260	ENST00000296254.3	chr3_185491225_-	-382.60	-382.30	-421.30
CAediting_330261	ENST00000296254.3	chr3_185491230_-	-383.00	-382.30	-421.30
CAediting_330262	ENST00000296254.3	chr3_185491231_-	-382.60	-382.30	-421.30
CAediting_330263	ENST00000296254.3	chr3_185491252_-	-381.40	-382.30	-421.30
CAediting_330264	ENST00000296254.3	chr3_185491268_-	-383.00	-382.30	-421.30
CAediting_330265	ENST00000296254.3	chr3_185491269_-	-383.00	-382.30	-421.30
CAediting_330266	ENST00000296254.3	chr3_185491277_-	-386.90	-382.30	-421.30
CAediting_330275	ENST00000467061.1	chr3_185492296_-	-1704.20	-1701.17	-1730.60
CAediting_330276	ENST00000467061.1	chr3_185493564_-	-1703.80	-1701.17	-1730.60
CAediting_330277	ENST00000467061.1	chr3_185493577_-	-1703.57	-1701.17	-1730.60
CAediting_330278	ENST00000467061.1	chr3_185493615_-	-1702.27	-1701.17	-1730.60
CAediting_330279	ENST00000467061.1	chr3_185493638_-	-1704.20	-1701.17	-1730.60
CAediting_330280	ENST00000467061.1	chr3_185493673_-	-1702.77	-1701.17	-1730.60
CAediting_330281	ENST00000467061.1	chr3_185493678_-	-1703.07	-1701.17	-1730.60
CAediting_330282	ENST00000467061.1	chr3_185493679_-	-1704.17	-1701.17	-1730.60
CAediting_330283	ENST00000467061.1	chr3_185493705_-	-1699.87	-1701.17	-1730.60
CAediting_330284	ENST00000467061.1	chr3_185493708_-	-1701.17	-1701.17	-1730.60
CAediting_330285	ENST00000467061.1	chr3_185493709_-	-1701.17	-1701.17	-1730.60
CAediting_330286	ENST00000467061.1	chr3_185493729_-	-1704.20	-1701.17	-1730.60
CAediting_330287	ENST00000467061.1	chr3_185493734_-	-1706.37	-1701.17	-1730.60
CAediting_330288	ENST00000467061.1	chr3_185493735_-	-1702.87	-1701.17	-1730.60
CAediting_330289	ENST00000467061.1	chr3_185493759_-	-1702.27	-1701.17	-1730.60
CAediting_330290	ENST00000467061.1	chr3_185493760_-	-1702.40	-1701.17	-1730.60
CAediting_330291	ENST00000467061.1	chr3_185493820_-	-1703.27	-1701.17	-1730.60
CAediting_330292	ENST00000467061.1	chr3_185493822_-	-1701.17	-1701.17	-1730.60
CAediting_330293	ENST00000467061.1	chr3_185495538_-	-1702.57	-1701.17	-1730.60
CAediting_330294	ENST00000467061.1	chr3_185495659_-	-1700.97	-1701.17	-1730.60
CAediting_330295	ENST00000467061.1	chr3_185495715_-	-1701.17	-1701.17	-1730.60

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Relation with ADAR for TMEM41A

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
KIRC	CAediting_330235	chr3_185490994_-	.	.	0.0180689181323342	0.314947035693065	0.029990464604551	0.290278405539724

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Relation with cancer stages for TMEM41A

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for TMEM41A

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for TMEM41A

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TMEM41A

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene