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Editing gene: SNX21 (CAeditome ID:90203)

Gene summary for SNX21

Gene summary

Gene information	Gene symbol	SNX21
	Gene ID	90203
	Gene name	sorting nexin family member 21
	Synonyms	C20orf161\|PP3993\|SNX-L\|SNXL\|dJ337O18.4
	Cytomap	20q13.12
	Type of gene	protein-coding
	Description	sorting nexin-21sorting nexin L
	Modification date	20210518
	UniProtAcc	Q969T3
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for SNX21

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000124104.17

RNA A-to-I editing events in Cancer.

CAediting_1431084(45836243, +), CAediting_1431085(45836370, +), CAediting_1431086(45836376, +), CAediting_1431087(45836397, +), CAediting_1431088(45836403, +), CAediting_1431089(45836412, +), CAediting_1431090(45836470, +), CAediting_1431091(45836471, +), CAediting_1431092(45836473, +), CAediting_1431093(45836475, +), CAediting_1431094(45836523, +), CAediting_1431095(45836525, +), CAediting_1431096(45836527, +), CAediting_1431097(45836543, +), CAediting_1431098(45836547, +), CAediting_1431099(45836573, +), CAediting_1431100(45836574, +), CAediting_1431101(45836578, +), CAediting_1431102(45836583, +), CAediting_1431103(45836584, +), CAediting_1431104(45836600, +), CAediting_1431105(45836601, +), CAediting_1431106(45836613, +), CAediting_1431107(45836618, +), CAediting_1431108(45836630, +), CAediting_1431109(45836634, +), CAediting_1431110(45836640, +), CAediting_1431111(45837792, +), CAediting_1431112(45837796, +), CAediting_1431113(45837842, +), CAediting_1431114(45837859, +), CAediting_1431115(45837866, +), CAediting_1431116(45837873, +), CAediting_1431117(45837877, +), CAediting_1431118(45837902, +), CAediting_1431119(45837906, +), CAediting_1431120(45837912, +), CAediting_1431121(45837914, +), CAediting_1431122(45837922, +), CAediting_1431123(45837925, +), CAediting_1431124(45837938, +), CAediting_1431125(45837953, +), CAediting_1431126(45838006, +), CAediting_1431127(45838066, +), CAediting_1431128(45838108, +), CAediting_1431129(45838126, +), CAediting_1431130(45838152, +), CAediting_1431131(45838157, +), CAediting_1431132(45838162, +), CAediting_1431133(45838199, +), CAediting_1431134(45838224, +), CAediting_1431135(45838266, +), CAediting_1431136(45838272, +), CAediting_1431137(45838283, +), CAediting_1431138(45838292, +), CAediting_1431139(45838317, +), CAediting_1431140(45838318, +), CAediting_1431141(45838335, +), CAediting_1431142(45838344, +), CAediting_1431143(45838345, +), CAediting_1431144(45838348, +), CAediting_1431145(45838357, +), CAediting_1431146(45838359, +), CAediting_1431147(45838363, +), CAediting_1431148(45838468, +), CAediting_1431149(45838469, +), CAediting_1431150(45838471, +), CAediting_1431151(45838490, +), CAediting_1431152(45838492, +), CAediting_1431153(45838498, +), CAediting_1431154(45838499, +), CAediting_1431155(45838552, +), CAediting_1431156(45838553, +), CAediting_1431157(45838584, +), CAediting_1431158(45838589, +), CAediting_1431159(45838592, +), CAediting_1431160(45838594, +), CAediting_1431161(45838595, +), CAediting_1431162(45838596, +), CAediting_1431163(45838598, +), CAediting_1431164(45838603, +), CAediting_1431165(45838604, +), CAediting_1431166(45838623, +), CAediting_1431167(45838634, +), CAediting_1431168(45838639, +), CAediting_1431169(45838643, +), CAediting_1431170(45838656, +), CAediting_1431171(45838660, +), CAediting_1431172(45838666, +), CAediting_1431173(45838675, +), CAediting_1431174(45838686, +), CAediting_1431175(45838695, +), CAediting_1431176(45838714, +), CAediting_1431177(45838913, +), CAediting_1431178(45838917, +), CAediting_1431179(45838925, +), CAediting_1431180(45838938, +), CAediting_1431181(45838958, +), CAediting_1431182(45838968, +), CAediting_1431183(45838974, +), CAediting_1431184(45838987, +), CAediting_1431185(45838994, +), CAediting_1431186(45839011, +), CAediting_1431187(45839023, +), CAediting_1431188(45839033, +), CAediting_1431189(45839035, +), CAediting_1431190(45839039, +), CAediting_1431191(45839049, +), CAediting_1431192(45839067, +), CAediting_1431193(45839073, +), CAediting_1431194(45839076, +), CAediting_1431195(45839093, +), CAediting_1431196(45839115, +), CAediting_1431197(45839122, +), CAediting_1431198(45839136, +), CAediting_1431199(45839155, +), CAediting_1431200(45839260, +), CAediting_1431201(45839261, +), CAediting_1431202(45839269, +), CAediting_1431203(45839304, +), CAediting_1431204(45839359, +), CAediting_1431205(45839401, +), CAediting_1431206(45839422, +), CAediting_1431207(45839428, +), CAediting_1431208(45839437, +), CAediting_1431209(45839444, +), CAediting_1431210(45839457, +), CAediting_1431211(45839508, +), CAediting_1431212(45839512, +), CAediting_1431213(45839652, +), CAediting_1431214(45839665, +), CAediting_1431215(45839674, +), CAediting_1431216(45839675, +), CAediting_1431217(45839680, +), CAediting_1431218(45839688, +), CAediting_1431219(45839689, +), CAediting_1431220(45839700, +), CAediting_1431221(45839788, +), CAediting_1431222(45839794, +), CAediting_1431223(45839798, +), CAediting_1431224(45839811, +), CAediting_1431225(45839815, +), CAediting_1431226(45839822, +), CAediting_1431227(45839829, +), CAediting_1431228(45839834, +), CAediting_1431229(45839837, +), CAediting_1431230(45839844, +), CAediting_1431231(45839850, +), CAediting_1431232(45839853, +), CAediting_1431233(45839854, +), CAediting_1431234(45839869, +), CAediting_1431235(45839888, +), CAediting_1431236(45839891, +), CAediting_1431237(45839895, +),

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RNA editing positional annotations for SNX21 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1431084	chr20_45836243_+	ncRNA_intronic
CAediting_1431085	chr20_45836370_+	ncRNA_intronic
CAediting_1431086	chr20_45836376_+	ncRNA_intronic
CAediting_1431087	chr20_45836397_+	ncRNA_intronic
CAediting_1431088	chr20_45836403_+	ncRNA_intronic
CAediting_1431089	chr20_45836412_+	ncRNA_intronic
CAediting_1431090	chr20_45836470_+	ncRNA_intronic
CAediting_1431091	chr20_45836471_+	ncRNA_intronic
CAediting_1431092	chr20_45836473_+	ncRNA_intronic
CAediting_1431093	chr20_45836475_+	ncRNA_intronic
CAediting_1431094	chr20_45836523_+	ncRNA_intronic
CAediting_1431095	chr20_45836525_+	ncRNA_intronic
CAediting_1431096	chr20_45836527_+	ncRNA_intronic
CAediting_1431097	chr20_45836543_+	ncRNA_intronic
CAediting_1431098	chr20_45836547_+	ncRNA_intronic
CAediting_1431099	chr20_45836573_+	ncRNA_intronic
CAediting_1431100	chr20_45836574_+	ncRNA_intronic
CAediting_1431101	chr20_45836578_+	ncRNA_intronic
CAediting_1431102	chr20_45836583_+	ncRNA_intronic
CAediting_1431103	chr20_45836584_+	ncRNA_intronic
CAediting_1431104	chr20_45836600_+	ncRNA_intronic
CAediting_1431105	chr20_45836601_+	ncRNA_intronic
CAediting_1431106	chr20_45836613_+	ncRNA_intronic
CAediting_1431107	chr20_45836618_+	ncRNA_intronic
CAediting_1431108	chr20_45836630_+	ncRNA_intronic
CAediting_1431109	chr20_45836634_+	ncRNA_intronic
CAediting_1431110	chr20_45836640_+	ncRNA_intronic
CAediting_1431111	chr20_45837792_+	ncRNA_intronic
CAediting_1431112	chr20_45837796_+	ncRNA_intronic
CAediting_1431113	chr20_45837842_+	ncRNA_intronic
CAediting_1431114	chr20_45837859_+	ncRNA_intronic
CAediting_1431115	chr20_45837866_+	ncRNA_intronic
CAediting_1431116	chr20_45837873_+	ncRNA_intronic
CAediting_1431117	chr20_45837877_+	ncRNA_intronic
CAediting_1431118	chr20_45837902_+	ncRNA_intronic
CAediting_1431119	chr20_45837906_+	ncRNA_intronic
CAediting_1431120	chr20_45837912_+	ncRNA_intronic
CAediting_1431121	chr20_45837914_+	ncRNA_intronic
CAediting_1431122	chr20_45837922_+	ncRNA_intronic
CAediting_1431123	chr20_45837925_+	ncRNA_intronic
CAediting_1431124	chr20_45837938_+	ncRNA_intronic
CAediting_1431125	chr20_45837953_+	ncRNA_intronic
CAediting_1431126	chr20_45838006_+	ncRNA_intronic
CAediting_1431127	chr20_45838066_+	ncRNA_intronic
CAediting_1431128	chr20_45838108_+	ncRNA_intronic
CAediting_1431129	chr20_45838126_+	ncRNA_intronic
CAediting_1431130	chr20_45838152_+	ncRNA_intronic
CAediting_1431131	chr20_45838157_+	ncRNA_intronic
CAediting_1431132	chr20_45838162_+	ncRNA_intronic
CAediting_1431133	chr20_45838199_+	ncRNA_intronic
CAediting_1431134	chr20_45838224_+	ncRNA_intronic
CAediting_1431135	chr20_45838266_+	splicing
CAediting_1431136	chr20_45838272_+	exonic
CAediting_1431137	chr20_45838283_+	exonic
CAediting_1431138	chr20_45838292_+	exonic
CAediting_1431139	chr20_45838317_+	exonic
CAediting_1431140	chr20_45838318_+	exonic
CAediting_1431141	chr20_45838335_+	ncRNA_exonic
CAediting_1431142	chr20_45838344_+	ncRNA_exonic
CAediting_1431143	chr20_45838345_+	ncRNA_exonic
CAediting_1431144	chr20_45838348_+	ncRNA_exonic
CAediting_1431145	chr20_45838357_+	ncRNA_exonic
CAediting_1431146	chr20_45838359_+	ncRNA_exonic
CAediting_1431147	chr20_45838363_+	ncRNA_intronic
CAediting_1431148	chr20_45838468_+	ncRNA_intronic
CAediting_1431149	chr20_45838469_+	ncRNA_intronic
CAediting_1431150	chr20_45838471_+	ncRNA_intronic
CAediting_1431151	chr20_45838490_+	ncRNA_intronic
CAediting_1431152	chr20_45838492_+	ncRNA_intronic
CAediting_1431153	chr20_45838498_+	ncRNA_intronic
CAediting_1431154	chr20_45838499_+	ncRNA_intronic
CAediting_1431155	chr20_45838552_+	ncRNA_intronic
CAediting_1431156	chr20_45838553_+	ncRNA_intronic
CAediting_1431157	chr20_45838584_+	ncRNA_intronic
CAediting_1431158	chr20_45838589_+	ncRNA_intronic
CAediting_1431159	chr20_45838592_+	ncRNA_intronic
CAediting_1431160	chr20_45838594_+	ncRNA_intronic
CAediting_1431161	chr20_45838595_+	ncRNA_intronic
CAediting_1431162	chr20_45838596_+	ncRNA_intronic
CAediting_1431163	chr20_45838598_+	ncRNA_intronic
CAediting_1431164	chr20_45838603_+	ncRNA_intronic
CAediting_1431165	chr20_45838604_+	ncRNA_intronic
CAediting_1431166	chr20_45838623_+	ncRNA_intronic
CAediting_1431167	chr20_45838634_+	ncRNA_intronic
CAediting_1431168	chr20_45838639_+	ncRNA_intronic
CAediting_1431169	chr20_45838643_+	ncRNA_intronic
CAediting_1431170	chr20_45838656_+	ncRNA_intronic
CAediting_1431171	chr20_45838660_+	ncRNA_intronic
CAediting_1431172	chr20_45838666_+	ncRNA_intronic
CAediting_1431173	chr20_45838675_+	ncRNA_intronic
CAediting_1431174	chr20_45838686_+	ncRNA_intronic
CAediting_1431175	chr20_45838695_+	ncRNA_intronic
CAediting_1431176	chr20_45838714_+	ncRNA_intronic
CAediting_1431177	chr20_45838913_+	ncRNA_intronic
CAediting_1431178	chr20_45838917_+	ncRNA_intronic
CAediting_1431179	chr20_45838925_+	ncRNA_intronic
CAediting_1431180	chr20_45838938_+	ncRNA_intronic
CAediting_1431181	chr20_45838958_+	ncRNA_intronic
CAediting_1431182	chr20_45838968_+	ncRNA_intronic
CAediting_1431183	chr20_45838974_+	ncRNA_intronic
CAediting_1431184	chr20_45838987_+	ncRNA_intronic
CAediting_1431185	chr20_45838994_+	ncRNA_intronic
CAediting_1431186	chr20_45839011_+	ncRNA_intronic
CAediting_1431187	chr20_45839023_+	ncRNA_intronic
CAediting_1431188	chr20_45839033_+	ncRNA_intronic
CAediting_1431189	chr20_45839035_+	ncRNA_intronic
CAediting_1431190	chr20_45839039_+	ncRNA_intronic
CAediting_1431191	chr20_45839049_+	ncRNA_intronic
CAediting_1431192	chr20_45839067_+	ncRNA_intronic
CAediting_1431193	chr20_45839073_+	ncRNA_intronic
CAediting_1431194	chr20_45839076_+	ncRNA_intronic
CAediting_1431195	chr20_45839093_+	ncRNA_intronic
CAediting_1431196	chr20_45839115_+	ncRNA_intronic
CAediting_1431197	chr20_45839122_+	ncRNA_intronic
CAediting_1431198	chr20_45839136_+	ncRNA_intronic
CAediting_1431199	chr20_45839155_+	ncRNA_intronic
CAediting_1431200	chr20_45839260_+	ncRNA_intronic
CAediting_1431201	chr20_45839261_+	ncRNA_intronic
CAediting_1431202	chr20_45839269_+	ncRNA_intronic
CAediting_1431203	chr20_45839304_+	ncRNA_intronic
CAediting_1431204	chr20_45839359_+	ncRNA_intronic
CAediting_1431205	chr20_45839401_+	ncRNA_intronic
CAediting_1431206	chr20_45839422_+	ncRNA_intronic
CAediting_1431207	chr20_45839428_+	ncRNA_intronic
CAediting_1431208	chr20_45839437_+	ncRNA_intronic
CAediting_1431209	chr20_45839444_+	ncRNA_intronic
CAediting_1431210	chr20_45839457_+	ncRNA_intronic
CAediting_1431211	chr20_45839508_+	ncRNA_intronic
CAediting_1431212	chr20_45839512_+	ncRNA_intronic
CAediting_1431213	chr20_45839652_+	ncRNA_intronic
CAediting_1431214	chr20_45839665_+	ncRNA_intronic
CAediting_1431215	chr20_45839674_+	ncRNA_intronic
CAediting_1431216	chr20_45839675_+	ncRNA_intronic
CAediting_1431217	chr20_45839680_+	ncRNA_intronic
CAediting_1431218	chr20_45839688_+	ncRNA_intronic
CAediting_1431219	chr20_45839689_+	ncRNA_intronic
CAediting_1431220	chr20_45839700_+	ncRNA_intronic
CAediting_1431221	chr20_45839788_+	ncRNA_intronic
CAediting_1431222	chr20_45839794_+	ncRNA_intronic
CAediting_1431223	chr20_45839798_+	ncRNA_intronic
CAediting_1431224	chr20_45839811_+	ncRNA_intronic
CAediting_1431225	chr20_45839815_+	ncRNA_intronic
CAediting_1431226	chr20_45839822_+	ncRNA_intronic
CAediting_1431227	chr20_45839829_+	ncRNA_intronic
CAediting_1431228	chr20_45839834_+	ncRNA_intronic
CAediting_1431229	chr20_45839837_+	ncRNA_intronic
CAediting_1431230	chr20_45839844_+	ncRNA_intronic
CAediting_1431231	chr20_45839850_+	ncRNA_intronic
CAediting_1431232	chr20_45839853_+	ncRNA_intronic
CAediting_1431233	chr20_45839854_+	ncRNA_intronic
CAediting_1431234	chr20_45839869_+	ncRNA_intronic
CAediting_1431235	chr20_45839888_+	ncRNA_intronic
CAediting_1431236	chr20_45839891_+	ncRNA_intronic
CAediting_1431237	chr20_45839895_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1431084	chr20_45836243_+	SINE	Alu	AluY
CAediting_1431085	chr20_45836370_+	SINE	Alu	AluY
CAediting_1431086	chr20_45836376_+	SINE	Alu	AluY
CAediting_1431087	chr20_45836397_+	SINE	Alu	AluY
CAediting_1431088	chr20_45836403_+	SINE	Alu	AluY
CAediting_1431089	chr20_45836412_+	SINE	Alu	AluY
CAediting_1431090	chr20_45836470_+	SINE	Alu	AluY
CAediting_1431091	chr20_45836471_+	SINE	Alu	AluY
CAediting_1431092	chr20_45836473_+	SINE	Alu	AluY
CAediting_1431093	chr20_45836475_+	SINE	Alu	AluY
CAediting_1431094	chr20_45836523_+	SINE	Alu	AluJr
CAediting_1431095	chr20_45836525_+	SINE	Alu	AluJr
CAediting_1431096	chr20_45836527_+	SINE	Alu	AluJr
CAediting_1431097	chr20_45836543_+	SINE	Alu	AluJr
CAediting_1431098	chr20_45836547_+	SINE	Alu	AluJr
CAediting_1431099	chr20_45836573_+	SINE	Alu	AluJr
CAediting_1431100	chr20_45836574_+	SINE	Alu	AluJr
CAediting_1431101	chr20_45836578_+	SINE	Alu	AluJr
CAediting_1431102	chr20_45836583_+	SINE	Alu	AluJr
CAediting_1431103	chr20_45836584_+	SINE	Alu	AluJr
CAediting_1431104	chr20_45836600_+	SINE	Alu	AluJr
CAediting_1431105	chr20_45836601_+	SINE	Alu	AluJr
CAediting_1431106	chr20_45836613_+	SINE	Alu	AluJr
CAediting_1431107	chr20_45836618_+	SINE	Alu	AluJr
CAediting_1431108	chr20_45836630_+	SINE	Alu	AluJr
CAediting_1431109	chr20_45836634_+	SINE	Alu	AluJr
CAediting_1431110	chr20_45836640_+	SINE	Alu	AluJr
CAediting_1431111	chr20_45837792_+	SINE	Alu	AluSx1
CAediting_1431112	chr20_45837796_+	SINE	Alu	AluSx1
CAediting_1431113	chr20_45837842_+	SINE	Alu	AluSx1
CAediting_1431114	chr20_45837859_+	SINE	Alu	AluSx1
CAediting_1431115	chr20_45837866_+	SINE	Alu	AluSx1
CAediting_1431116	chr20_45837873_+	SINE	Alu	AluSx1
CAediting_1431117	chr20_45837877_+	SINE	Alu	AluSx1
CAediting_1431118	chr20_45837902_+	SINE	Alu	AluSx1
CAediting_1431119	chr20_45837906_+	SINE	Alu	AluSx1
CAediting_1431120	chr20_45837912_+	SINE	Alu	AluSx1
CAediting_1431121	chr20_45837914_+	SINE	Alu	AluSx1
CAediting_1431122	chr20_45837922_+	SINE	Alu	AluSx1
CAediting_1431123	chr20_45837925_+	SINE	Alu	AluSx1
CAediting_1431124	chr20_45837938_+	SINE	Alu	AluSx1
CAediting_1431125	chr20_45837953_+	SINE	Alu	AluSx1
CAediting_1431126	chr20_45838006_+	SINE	Alu	AluSx1
CAediting_1431127	chr20_45838066_+	SINE	Alu	AluSx1
CAediting_1431128	chr20_45838108_+	SINE	Alu	AluJr
CAediting_1431129	chr20_45838126_+	SINE	Alu	AluJr
CAediting_1431130	chr20_45838152_+	SINE	Alu	AluJr
CAediting_1431131	chr20_45838157_+	SINE	Alu	AluJr
CAediting_1431132	chr20_45838162_+	SINE	Alu	AluJr
CAediting_1431133	chr20_45838199_+	SINE	Alu	AluJr
CAediting_1431134	chr20_45838224_+	SINE	Alu	AluJr
CAediting_1431135	chr20_45838266_+	SINE	Alu	AluJr
CAediting_1431136	chr20_45838272_+	SINE	Alu	AluJr
CAediting_1431137	chr20_45838283_+	SINE	Alu	AluJr
CAediting_1431138	chr20_45838292_+	SINE	Alu	AluJr
CAediting_1431139	chr20_45838317_+	SINE	Alu	AluJr
CAediting_1431140	chr20_45838318_+	SINE	Alu	AluJr
CAediting_1431141	chr20_45838335_+	SINE	Alu	AluJr
CAediting_1431142	chr20_45838344_+	SINE	Alu	AluJr
CAediting_1431143	chr20_45838345_+	SINE	Alu	AluJr
CAediting_1431144	chr20_45838348_+	SINE	Alu	AluJr
CAediting_1431145	chr20_45838357_+	SINE	Alu	AluJr
CAediting_1431146	chr20_45838359_+	SINE	Alu	AluJr
CAediting_1431147	chr20_45838363_+	SINE	Alu	AluJr
CAediting_1431148	chr20_45838468_+	DNA	hAT-Charlie	MER113
CAediting_1431149	chr20_45838469_+	DNA	hAT-Charlie	MER113
CAediting_1431150	chr20_45838471_+	DNA	hAT-Charlie	MER113
CAediting_1431151	chr20_45838490_+	SINE	Alu	AluSx1
CAediting_1431152	chr20_45838492_+	SINE	Alu	AluSx1
CAediting_1431153	chr20_45838498_+	SINE	Alu	AluSx1
CAediting_1431154	chr20_45838499_+	SINE	Alu	AluSx1
CAediting_1431155	chr20_45838552_+	SINE	Alu	AluSx1
CAediting_1431156	chr20_45838553_+	SINE	Alu	AluSx1
CAediting_1431157	chr20_45838584_+	SINE	Alu	AluSx1
CAediting_1431158	chr20_45838589_+	SINE	Alu	AluSx1
CAediting_1431159	chr20_45838592_+	SINE	Alu	AluSx1
CAediting_1431160	chr20_45838594_+	SINE	Alu	AluSx1
CAediting_1431161	chr20_45838595_+	SINE	Alu	AluSx1
CAediting_1431162	chr20_45838596_+	SINE	Alu	AluSx1
CAediting_1431163	chr20_45838598_+	SINE	Alu	AluSx1
CAediting_1431164	chr20_45838603_+	SINE	Alu	AluSx1
CAediting_1431165	chr20_45838604_+	SINE	Alu	AluSx1
CAediting_1431166	chr20_45838623_+	SINE	Alu	AluSx1
CAediting_1431167	chr20_45838634_+	SINE	Alu	AluSx1
CAediting_1431168	chr20_45838639_+	SINE	Alu	AluSx1
CAediting_1431169	chr20_45838643_+	SINE	Alu	AluSx1
CAediting_1431170	chr20_45838656_+	SINE	Alu	AluSx1
CAediting_1431171	chr20_45838660_+	SINE	Alu	AluSx1
CAediting_1431172	chr20_45838666_+	SINE	Alu	AluSx1
CAediting_1431173	chr20_45838675_+	SINE	Alu	AluSx1
CAediting_1431174	chr20_45838686_+	SINE	Alu	AluSx1
CAediting_1431175	chr20_45838695_+	SINE	Alu	AluSx1
CAediting_1431176	chr20_45838714_+	SINE	Alu	AluSx1
CAediting_1431177	chr20_45838913_+	SINE	Alu	AluSp
CAediting_1431178	chr20_45838917_+	SINE	Alu	AluSp
CAediting_1431179	chr20_45838925_+	SINE	Alu	AluSp
CAediting_1431180	chr20_45838938_+	SINE	Alu	AluSp
CAediting_1431181	chr20_45838958_+	SINE	Alu	AluSp
CAediting_1431182	chr20_45838968_+	SINE	Alu	AluSp
CAediting_1431183	chr20_45838974_+	SINE	Alu	AluSp
CAediting_1431184	chr20_45838987_+	SINE	Alu	AluSp
CAediting_1431185	chr20_45838994_+	SINE	Alu	AluSp
CAediting_1431186	chr20_45839011_+	SINE	Alu	AluSp
CAediting_1431187	chr20_45839023_+	SINE	Alu	AluSp
CAediting_1431188	chr20_45839033_+	SINE	Alu	AluSp
CAediting_1431189	chr20_45839035_+	SINE	Alu	AluSp
CAediting_1431190	chr20_45839039_+	SINE	Alu	AluSp
CAediting_1431191	chr20_45839049_+	SINE	Alu	AluSp
CAediting_1431192	chr20_45839067_+	SINE	Alu	AluSp
CAediting_1431193	chr20_45839073_+	SINE	Alu	AluSp
CAediting_1431194	chr20_45839076_+	SINE	Alu	AluSp
CAediting_1431195	chr20_45839093_+	SINE	Alu	AluSp
CAediting_1431196	chr20_45839115_+	SINE	Alu	AluSp
CAediting_1431197	chr20_45839122_+	SINE	Alu	AluSp
CAediting_1431198	chr20_45839136_+	SINE	Alu	AluSp
CAediting_1431199	chr20_45839155_+	SINE	Alu	AluSp
CAediting_1431200	chr20_45839260_+	SINE	Alu	AluY
CAediting_1431201	chr20_45839261_+	SINE	Alu	AluY
CAediting_1431202	chr20_45839269_+	SINE	Alu	AluY
CAediting_1431203	chr20_45839304_+	SINE	Alu	AluY
CAediting_1431204	chr20_45839359_+	SINE	Alu	AluY
CAediting_1431205	chr20_45839401_+	SINE	Alu	AluY
CAediting_1431206	chr20_45839422_+	SINE	Alu	AluY
CAediting_1431207	chr20_45839428_+	SINE	Alu	AluY
CAediting_1431208	chr20_45839437_+	SINE	Alu	AluY
CAediting_1431209	chr20_45839444_+	SINE	Alu	AluY
CAediting_1431210	chr20_45839457_+	SINE	Alu	AluY
CAediting_1431211	chr20_45839508_+	SINE	Alu	AluY
CAediting_1431212	chr20_45839512_+	SINE	Alu	AluY
CAediting_1431213	chr20_45839652_+	SINE	Alu	AluJr
CAediting_1431214	chr20_45839665_+	SINE	Alu	AluJr
CAediting_1431215	chr20_45839674_+	SINE	Alu	AluJr
CAediting_1431216	chr20_45839675_+	SINE	Alu	AluJr
CAediting_1431217	chr20_45839680_+	SINE	Alu	AluJr
CAediting_1431218	chr20_45839688_+	SINE	Alu	AluJr
CAediting_1431219	chr20_45839689_+	SINE	Alu	AluJr
CAediting_1431220	chr20_45839700_+	SINE	Alu	AluJr
CAediting_1431221	chr20_45839788_+	SINE	Alu	AluJr
CAediting_1431222	chr20_45839794_+	SINE	Alu	AluJr
CAediting_1431223	chr20_45839798_+	SINE	Alu	AluJr
CAediting_1431224	chr20_45839811_+	SINE	Alu	AluJr
CAediting_1431225	chr20_45839815_+	SINE	Alu	AluJr
CAediting_1431226	chr20_45839822_+	SINE	Alu	AluJr
CAediting_1431227	chr20_45839829_+	SINE	Alu	AluJr
CAediting_1431228	chr20_45839834_+	SINE	Alu	AluJr
CAediting_1431229	chr20_45839837_+	SINE	Alu	AluJr
CAediting_1431230	chr20_45839844_+	SINE	Alu	AluJr
CAediting_1431231	chr20_45839850_+	SINE	Alu	AluJr
CAediting_1431232	chr20_45839853_+	SINE	Alu	AluJr
CAediting_1431233	chr20_45839854_+	SINE	Alu	AluJr
CAediting_1431234	chr20_45839869_+	SINE	Alu	AluJr
CAediting_1431235	chr20_45839888_+	SINE	Alu	AluJr
CAediting_1431236	chr20_45839891_+	SINE	Alu	AluJr
CAediting_1431237	chr20_45839895_+	SINE	Alu	AluJr

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RNA A-to-I editing events in the alternative splicing sites for SNX21

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_1431135	chr20_45838266_+	45838247:45838269	3SS	0+1i	TTTTCTTTTTCTTTTTTTTAGAG	-4.68	TTTTCTTTTTCTTTTTTTTGGAG	4.07
MEX_2	CAediting_1431135	chr20_45838266_+	45838247:45838269	3SS	0+1i	TTTTCTTTTTCTTTTTTTTAGAG	-4.68	TTTTCTTTTTCTTTTTTTTGGAG	4.07
ES	CAediting_1431146	chr20_45838359_+	45838358:45838366	5SS	2+0i	CAGGTATGA	9.46	CGGGTATGA	7.63
MEX_2	CAediting_1431146	chr20_45838359_+	45838358:45838366	5SS	2+0i	CAGGTATGA	9.46	CGGGTATGA	7.63
ES	CAediting_1431147	chr20_45838363_+	45838358:45838366	5SS	0+3i	CAGGTATGA	9.46	CAGGTGTGA	5.29
MEX_2	CAediting_1431147	chr20_45838363_+	45838358:45838366	5SS	0+3i	CAGGTATGA	9.46	CAGGTGTGA	5.29

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000124104.17.SNX21.

Correlation between RNA A-to-I editing and PSI for ENSG00000124104.17.SNX21.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SNX21

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

GBM.CAediting_1431195.ENSG00000124104.SNX21.png
Soverview

LUAD.CAediting_1431137.ENSG00000124104.SNX21.png
Soverview

OV.CAediting_1431137.ENSG00000124104.SNX21.png
Soverview

STAD.CAediting_1431137.ENSG00000124104.SNX21.png
Soverview

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Protein coding region RNA A-to-I editings for SNX21

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SNX21

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688080	chr9_63819626_+	ENSG00000124104.17	ENST00000342644	hsa-miR-4477b	45842324	45842331	8mer-1a	45842310	45842331	140	-11.18
CAediting_1229415	chr17_67471547_+	ENSG00000124104.17	ENST00000342644	hsa-miR-548aa	45842589	45842595	7mer-m8	45842571	45842596	146	-9.08
CAediting_396018	chr5_1062918_-	ENSG00000124104.17	ENST00000342644	hsa-miR-4635	45842057	45842062	6mer	45842043	45842063	140	-21.04
CAediting_468389	chr6_31355314_-	ENSG00000124104.17	ENST00000342644	hsa-miR-6891-5p	45842315	45842320	6mer	45842303	45842321	145	-28.3

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SNX21

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SNX21

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_1431137	chr20_45838283_+	0.0166267302223929	0.233272713055086	.	.	.	.
LUAD	CAediting_1431137	chr20_45838283_+	0.00786772038811478	0.261771738810416	.	.	.	.

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Relation with cancer stages for SNX21

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for SNX21

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SNX21

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SNX21

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene