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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CCNH (CAeditome ID:902)

Gene summary for CCNH

check button Gene summary
Gene informationGene symbol

CCNH

Gene ID

902

Gene namecyclin H
SynonymsCAK|CycH|p34|p37
Cytomap

5q14.3

Type of geneprotein-coding
Descriptioncyclin-HCAK complex subunitCDK-activating kinase complex subunitMO15-associated proteincyclin-dependent kinase-activating kinase complex subunit
Modification date20210518
UniProtAcc

P51946

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CCNH

GO:0016251

Cyclin-H

7533895

CCNH

GO:0006366

Cyclin-H

8692841

CCNH

GO:0006366

Cyclin-H

9852112

CCNH

GO:0006367

Cyclin-H

7533895

CCNH

GO:0005654

Cyclin-H

0000052

CCNH

GO:0000439

Cyclin-H

8692841

CCNH

GO:0000439

Cyclin-H

8692842

CCNH

GO:0005675

Cyclin-H

9852112

CCNH

GO:0019907

Cyclin-H

8692841

CCNH

GO:0019907

Cyclin-H

8692842

CCNH

GO:0070516

Cyclin-H

8692841

CCNH

GO:0070516

Cyclin-H

8692842

CCNH

GO:0070985

Cyclin-H

8692841


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RNA A-to-I events for CCNH

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000134480.12

check button RNA A-to-I editing events in Cancer.
CAediting_419704(87392498, -), CAediting_419705(87392511, -), CAediting_419706(87392512, -), CAediting_419707(87394110, -), CAediting_419708(87394295, -), CAediting_419709(87394299, -), CAediting_419710(87394304, -), CAediting_419711(87396417, -), CAediting_419712(87396433, -), CAediting_419713(87396516, -), CAediting_419714(87396598, -), CAediting_419715(87397193, -), CAediting_419716(87397215, -), CAediting_419717(87397230, -), CAediting_419718(87397231, -), CAediting_419719(87397297, -), CAediting_419720(87397298, -), CAediting_419721(87398784, -), CAediting_419722(87398792, -), CAediting_419723(87406539, -), CAediting_419724(87412772, -),

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RNA editing positional annotations for CCNH using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_419704chr5_87392498_-ncRNA_exonic
CAediting_419705chr5_87392511_-ncRNA_exonic
CAediting_419706chr5_87392512_-ncRNA_exonic
CAediting_419707chr5_87394110_-ncRNA_intronic
CAediting_419708chr5_87394295_-ncRNA_exonic
CAediting_419709chr5_87394299_-ncRNA_exonic
CAediting_419710chr5_87394304_-ncRNA_exonic
CAediting_419711chr5_87396417_-ncRNA_intronic
CAediting_419712chr5_87396433_-ncRNA_intronic
CAediting_419713chr5_87396516_-ncRNA_intronic
CAediting_419714chr5_87396598_-ncRNA_intronic
CAediting_419715chr5_87397193_-ncRNA_intronic
CAediting_419716chr5_87397215_-ncRNA_intronic
CAediting_419717chr5_87397230_-ncRNA_intronic
CAediting_419718chr5_87397231_-ncRNA_intronic
CAediting_419719chr5_87397297_-ncRNA_intronic
CAediting_419720chr5_87397298_-ncRNA_intronic
CAediting_419721chr5_87398784_-ncRNA_intronic
CAediting_419722chr5_87398792_-ncRNA_intronic
CAediting_419723chr5_87406539_-ncRNA_intronic
CAediting_419724chr5_87412772_-exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_419711chr5_87396417_-SINEAluAluSc8
CAediting_419712chr5_87396433_-SINEAluAluSc8
CAediting_419713chr5_87396516_-SINEAluAluSc8
CAediting_419714chr5_87396598_-SINEAluAluSc8
CAediting_419715chr5_87397193_-SINEAluAluSx1
CAediting_419716chr5_87397215_-SINEAluAluSx1
CAediting_419717chr5_87397230_-SINEAluAluSx1
CAediting_419718chr5_87397231_-SINEAluAluSx1
CAediting_419719chr5_87397297_-SINEAluAluSx1
CAediting_419720chr5_87397298_-SINEAluAluSx1
CAediting_419721chr5_87398784_-SINEAluAluY
CAediting_419722chr5_87398792_-SINEAluAluY
CAediting_419723chr5_87406539_-DNATcMar-TiggerTigger4a

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RNA A-to-I editing events in the alternative splicing sites for CCNH

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
IRCAediting_419710chr5_87394304_-87394304:873943263SS3+0iGTTTTCTTTCCCTTTCACAGTAA9.29GTTTTCTTTCCCTTTCACAGTAG8.58

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000134480.12.CCNH.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000134480.12.CCNH.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CCNH

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CCNH

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for CCNH

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-320a-3p87394299873943057mer-1a8739429987394320151.00-21.11
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-320b87394299873943057mer-1a8739429987394320151.00-21.11
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-320b87394299873943057mer-1a8739429987394320151.00-21.11
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-320c87394299873943057mer-1a8739429987394318146.00-20.84
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-320c87394299873943057mer-1a8739429987394318146.00-20.84
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-320d87394299873943057mer-1a8739429987394317141.00-17.08
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-320d87394299873943057mer-1a8739429987394317141.00-17.08
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-442987394299873943057mer-1a8739429987394318146.00-17.13
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-9-3p87394299873943057mer-m88739429887394322149.00-12.31
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-9-3p87394299873943057mer-m88739429887394322149.00-12.31
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-9-3p87394299873943057mer-m88739429887394322149.00-12.31
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-320a-3p87394299873943057mer-1a8739429987394320151.00-21.11
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-320b87394299873943057mer-1a8739429987394320151.00-21.11
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-320b87394299873943057mer-1a8739429987394320151.00-21.11
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-320c87394299873943057mer-1a8739429987394318146.00-20.84
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-320c87394299873943057mer-1a8739429987394318146.00-20.84
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-320d87394299873943057mer-1a8739429987394317141.00-17.08
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-320d87394299873943057mer-1a8739429987394317141.00-17.08
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-442987394299873943057mer-1a8739429987394318146.00-17.13
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-9-3p87394299873943057mer-m88739429887394322149.00-12.31
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-9-3p87394299873943057mer-m88739429887394322149.00-12.31
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-9-3p87394299873943057mer-m88739429887394322149.00-12.31

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_419709chr5_87394299_-ENSG00000134480.12ENST00000508855hsa-miR-142-5p87394298873943047mer-m88739429787394317140-11.17
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000508855hsa-miR-548at-5p87394299873943068mer-1a8739429987394320154-13.89
CAediting_419709chr5_87394299_-ENSG00000134480.12ENST00000508855hsa-miR-5590-3p87394298873943047mer-m88739429787394317154-9.43
CAediting_419709chr5_87394299_-ENSG00000134480.12ENST00000504878hsa-miR-142-5p87394298873943047mer-m88739429787394317140-11.17
CAediting_419710chr5_87394304_-ENSG00000134480.12ENST00000504878hsa-miR-548at-5p87394299873943068mer-1a8739429987394320154-13.89
CAediting_419709chr5_87394299_-ENSG00000134480.12ENST00000504878hsa-miR-5590-3p87394298873943047mer-m88739429787394317154-9.43

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000134480.12ENST00000508855hsa-miR-605-3p87394085873940917mer-m88739408487394104149-15.79
CAediting_1229415chr17_67471547_+ENSG00000134480.12ENST00000508855hsa-miR-548aa87394062873940687mer-m88739406187394085140-9.35
CAediting_228905chr2_188297554_+ENSG00000134480.12ENST00000508855hsa-miR-561-3p87393863873938697mer-m88739386287393883142-8.1
CAediting_442554chr5_154685830_+ENSG00000134480.12ENST00000508855hsa-miR-130387394961873949677mer-m88739496087394981158-18.23
CAediting_442554chr5_154685830_+ENSG00000134480.12ENST00000508855hsa-miR-130387394770873947767mer-m88739476987394790141-12.05
CAediting_573001chr7_92204086_-ENSG00000134480.12ENST00000508855hsa-miR-1285-5p87394648873946547mer-m88739464787394668150-26.59

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_442554chr5_154685830_+ENSG00000134480.12ENST00000508855hsa-miR-130387394446873944527mer-m88739444587394464145-11.68
CAediting_228905chr2_188297554_+ENSG00000134480.12ENST00000508855hsa-miR-561-3p87394333873943397mer-m88739433287394354154-3.7

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CCNH

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000505587.4retained_intronSoverviewSoverview
ENST00000508855.4protein_codingSoverviewSoverview
ENST00000256897.7protein_codingSoverviewSoverview
ENST00000504878.1protein_codingSoverviewSoverview
ENST00000511207.4retained_intronSoverviewSoverview
ENST00000513499.4processed_transcriptSoverviewSoverview
ENST00000505230.1retained_intronSoverviewSoverview
ENST00000510020.4processed_transcriptSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_419704ENST00000505587.4chr5_87392498_--448.70-448.70-449.30
CAediting_419705ENST00000505587.4chr5_87392511_--449.30-448.70-449.30
CAediting_419706ENST00000505587.4chr5_87392512_--448.40-448.70-449.30
CAediting_419707ENST00000508855.4chr5_87394110_--543.20-540.40-548.60
CAediting_419708ENST00000508855.4chr5_87394295_--545.90-540.40-548.60
CAediting_419709ENST00000508855.4chr5_87394299_--543.40-540.40-548.60
CAediting_419710ENST00000508855.4chr5_87394304_--540.80-540.40-548.60
CAediting_419708ENST00000256897.7chr5_87394295_--369.80-364.30-369.90
CAediting_419709ENST00000256897.7chr5_87394299_--367.30-364.30-369.90
CAediting_419710ENST00000256897.7chr5_87394304_--364.40-364.30-369.90
CAediting_419724ENST00000256897.7chr5_87412772_--364.80-364.30-369.90
CAediting_419708ENST00000504878.1chr5_87394295_--401.90-397.50-402.00
CAediting_419709ENST00000504878.1chr5_87394299_--399.40-397.50-402.00
CAediting_419710ENST00000504878.1chr5_87394304_--397.70-397.50-402.00
CAediting_419724ENST00000504878.1chr5_87412772_--397.70-397.50-402.00
CAediting_419708ENST00000511207.4chr5_87394295_--81.90-77.90-82.70
CAediting_419709ENST00000511207.4chr5_87394299_--80.20-77.90-82.70
CAediting_419710ENST00000511207.4chr5_87394304_--78.60-77.90-82.70
CAediting_419724ENST00000513499.4chr5_87412772_--168.20-168.50-168.20
CAediting_419724ENST00000505230.1chr5_87412772_--146.50-146.90-146.50
CAediting_419724ENST00000510020.4chr5_87412772_--158.10-157.20-158.10

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Relation with ADAR for CCNH

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for CCNH

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for CCNH

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for CCNH

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CCNH

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
CCNHC0006142Malignant neoplasm of breast1CTD_human
CCNHC0007097Carcinoma1CTD_human
CCNHC0007102Malignant tumor of colon1CTD_human
CCNHC0007131Non-Small Cell Lung Carcinoma1CTD_human
CCNHC0009375Colonic Neoplasms1CTD_human
CCNHC0014859Esophageal Neoplasms1CTD_human
CCNHC0017636Glioblastoma1CTD_human
CCNHC0023903Liver neoplasms1CTD_human
CCNHC0024232Lymphatic Metastasis1CTD_human
CCNHC0024667Animal Mammary Neoplasms1CTD_human
CCNHC0024668Mammary Neoplasms, Experimental1CTD_human
CCNHC0033578Prostatic Neoplasms1CTD_human
CCNHC0205696Anaplastic carcinoma1CTD_human
CCNHC0205697Carcinoma, Spindle-Cell1CTD_human
CCNHC0205698Undifferentiated carcinoma1CTD_human
CCNHC0205699Carcinomatosis1CTD_human
CCNHC0334588Giant Cell Glioblastoma1CTD_human
CCNHC0345904Malignant neoplasm of liver1CTD_human
CCNHC0376358Malignant neoplasm of prostate1CTD_human
CCNHC0546837Malignant neoplasm of esophagus1CTD_human
CCNHC0678222Breast Carcinoma1CTD_human
CCNHC0919267ovarian neoplasm1CTD_human
CCNHC1140680Malignant neoplasm of ovary1CTD_human
CCNHC1257925Mammary Carcinoma, Animal1CTD_human
CCNHC1257931Mammary Neoplasms, Human1CTD_human
CCNHC1458155Mammary Neoplasms1CTD_human
CCNHC1621958Glioblastoma Multiforme1CTD_human
CCNHC4704874Mammary Carcinoma, Human1CTD_human