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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CCNH (CAeditome ID:902) |
Gene summary for CCNH |
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Gene information | Gene symbol | CCNH | Gene ID | 902 |
Gene name | cyclin H | |
Synonyms | CAK|CycH|p34|p37 | |
Cytomap | 5q14.3 | |
Type of gene | protein-coding | |
Description | cyclin-HCAK complex subunitCDK-activating kinase complex subunitMO15-associated proteincyclin-dependent kinase-activating kinase complex subunit | |
Modification date | 20210518 | |
UniProtAcc | P51946 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
CCNH | GO:0016251 | Cyclin-H | 7533895 |
CCNH | GO:0006366 | Cyclin-H | 8692841 |
CCNH | GO:0006366 | Cyclin-H | 9852112 |
CCNH | GO:0006367 | Cyclin-H | 7533895 |
CCNH | GO:0005654 | Cyclin-H | 0000052 |
CCNH | GO:0000439 | Cyclin-H | 8692841 |
CCNH | GO:0000439 | Cyclin-H | 8692842 |
CCNH | GO:0005675 | Cyclin-H | 9852112 |
CCNH | GO:0019907 | Cyclin-H | 8692841 |
CCNH | GO:0019907 | Cyclin-H | 8692842 |
CCNH | GO:0070516 | Cyclin-H | 8692841 |
CCNH | GO:0070516 | Cyclin-H | 8692842 |
CCNH | GO:0070985 | Cyclin-H | 8692841 |
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RNA A-to-I events for CCNH |
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CAediting_419704(87392498, -), CAediting_419705(87392511, -), CAediting_419706(87392512, -), CAediting_419707(87394110, -), CAediting_419708(87394295, -), CAediting_419709(87394299, -), CAediting_419710(87394304, -), CAediting_419711(87396417, -), CAediting_419712(87396433, -), CAediting_419713(87396516, -), CAediting_419714(87396598, -), CAediting_419715(87397193, -), CAediting_419716(87397215, -), CAediting_419717(87397230, -), CAediting_419718(87397231, -), CAediting_419719(87397297, -), CAediting_419720(87397298, -), CAediting_419721(87398784, -), CAediting_419722(87398792, -), CAediting_419723(87406539, -), CAediting_419724(87412772, -), |
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RNA editing positional annotations for CCNH using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_419704 | chr5_87392498_- | ncRNA_exonic |
CAediting_419705 | chr5_87392511_- | ncRNA_exonic |
CAediting_419706 | chr5_87392512_- | ncRNA_exonic |
CAediting_419707 | chr5_87394110_- | ncRNA_intronic |
CAediting_419708 | chr5_87394295_- | ncRNA_exonic |
CAediting_419709 | chr5_87394299_- | ncRNA_exonic |
CAediting_419710 | chr5_87394304_- | ncRNA_exonic |
CAediting_419711 | chr5_87396417_- | ncRNA_intronic |
CAediting_419712 | chr5_87396433_- | ncRNA_intronic |
CAediting_419713 | chr5_87396516_- | ncRNA_intronic |
CAediting_419714 | chr5_87396598_- | ncRNA_intronic |
CAediting_419715 | chr5_87397193_- | ncRNA_intronic |
CAediting_419716 | chr5_87397215_- | ncRNA_intronic |
CAediting_419717 | chr5_87397230_- | ncRNA_intronic |
CAediting_419718 | chr5_87397231_- | ncRNA_intronic |
CAediting_419719 | chr5_87397297_- | ncRNA_intronic |
CAediting_419720 | chr5_87397298_- | ncRNA_intronic |
CAediting_419721 | chr5_87398784_- | ncRNA_intronic |
CAediting_419722 | chr5_87398792_- | ncRNA_intronic |
CAediting_419723 | chr5_87406539_- | ncRNA_intronic |
CAediting_419724 | chr5_87412772_- | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_419711 | chr5_87396417_- | SINE | Alu | AluSc8 |
CAediting_419712 | chr5_87396433_- | SINE | Alu | AluSc8 |
CAediting_419713 | chr5_87396516_- | SINE | Alu | AluSc8 |
CAediting_419714 | chr5_87396598_- | SINE | Alu | AluSc8 |
CAediting_419715 | chr5_87397193_- | SINE | Alu | AluSx1 |
CAediting_419716 | chr5_87397215_- | SINE | Alu | AluSx1 |
CAediting_419717 | chr5_87397230_- | SINE | Alu | AluSx1 |
CAediting_419718 | chr5_87397231_- | SINE | Alu | AluSx1 |
CAediting_419719 | chr5_87397297_- | SINE | Alu | AluSx1 |
CAediting_419720 | chr5_87397298_- | SINE | Alu | AluSx1 |
CAediting_419721 | chr5_87398784_- | SINE | Alu | AluY |
CAediting_419722 | chr5_87398792_- | SINE | Alu | AluY |
CAediting_419723 | chr5_87406539_- | DNA | TcMar-Tigger | Tigger4a |
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RNA A-to-I editing events in the alternative splicing sites for CCNH |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
IR | CAediting_419710 | chr5_87394304_- | 87394304:87394326 | 3SS | 3+0i | GTTTTCTTTCCCTTTCACAGTAA | 9.29 | GTTTTCTTTCCCTTTCACAGTAG | 8.58 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CCNH |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CCNH |
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The effects of the RNA editing to the miRNA binding sites for CCNH |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-320a-3p | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394320 | 151.00 | -21.11 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-320b | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394320 | 151.00 | -21.11 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-320b | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394320 | 151.00 | -21.11 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-320c | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394318 | 146.00 | -20.84 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-320c | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394318 | 146.00 | -20.84 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-320d | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394317 | 141.00 | -17.08 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-320d | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394317 | 141.00 | -17.08 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-4429 | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394318 | 146.00 | -17.13 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-9-3p | 87394299 | 87394305 | 7mer-m8 | 87394298 | 87394322 | 149.00 | -12.31 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-9-3p | 87394299 | 87394305 | 7mer-m8 | 87394298 | 87394322 | 149.00 | -12.31 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-9-3p | 87394299 | 87394305 | 7mer-m8 | 87394298 | 87394322 | 149.00 | -12.31 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-320a-3p | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394320 | 151.00 | -21.11 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-320b | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394320 | 151.00 | -21.11 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-320b | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394320 | 151.00 | -21.11 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-320c | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394318 | 146.00 | -20.84 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-320c | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394318 | 146.00 | -20.84 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-320d | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394317 | 141.00 | -17.08 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-320d | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394317 | 141.00 | -17.08 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-4429 | 87394299 | 87394305 | 7mer-1a | 87394299 | 87394318 | 146.00 | -17.13 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-9-3p | 87394299 | 87394305 | 7mer-m8 | 87394298 | 87394322 | 149.00 | -12.31 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-9-3p | 87394299 | 87394305 | 7mer-m8 | 87394298 | 87394322 | 149.00 | -12.31 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-9-3p | 87394299 | 87394305 | 7mer-m8 | 87394298 | 87394322 | 149.00 | -12.31 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_419709 | chr5_87394299_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-142-5p | 87394298 | 87394304 | 7mer-m8 | 87394297 | 87394317 | 140 | -11.17 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-548at-5p | 87394299 | 87394306 | 8mer-1a | 87394299 | 87394320 | 154 | -13.89 |
CAediting_419709 | chr5_87394299_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-5590-3p | 87394298 | 87394304 | 7mer-m8 | 87394297 | 87394317 | 154 | -9.43 |
CAediting_419709 | chr5_87394299_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-142-5p | 87394298 | 87394304 | 7mer-m8 | 87394297 | 87394317 | 140 | -11.17 |
CAediting_419710 | chr5_87394304_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-548at-5p | 87394299 | 87394306 | 8mer-1a | 87394299 | 87394320 | 154 | -13.89 |
CAediting_419709 | chr5_87394299_- | ENSG00000134480.12 | ENST00000504878 | hsa-miR-5590-3p | 87394298 | 87394304 | 7mer-m8 | 87394297 | 87394317 | 154 | -9.43 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000134480.12 | ENST00000508855 | hsa-miR-605-3p | 87394085 | 87394091 | 7mer-m8 | 87394084 | 87394104 | 149 | -15.79 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000134480.12 | ENST00000508855 | hsa-miR-548aa | 87394062 | 87394068 | 7mer-m8 | 87394061 | 87394085 | 140 | -9.35 |
CAediting_228905 | chr2_188297554_+ | ENSG00000134480.12 | ENST00000508855 | hsa-miR-561-3p | 87393863 | 87393869 | 7mer-m8 | 87393862 | 87393883 | 142 | -8.1 |
CAediting_442554 | chr5_154685830_+ | ENSG00000134480.12 | ENST00000508855 | hsa-miR-1303 | 87394961 | 87394967 | 7mer-m8 | 87394960 | 87394981 | 158 | -18.23 |
CAediting_442554 | chr5_154685830_+ | ENSG00000134480.12 | ENST00000508855 | hsa-miR-1303 | 87394770 | 87394776 | 7mer-m8 | 87394769 | 87394790 | 141 | -12.05 |
CAediting_573001 | chr7_92204086_- | ENSG00000134480.12 | ENST00000508855 | hsa-miR-1285-5p | 87394648 | 87394654 | 7mer-m8 | 87394647 | 87394668 | 150 | -26.59 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_442554 | chr5_154685830_+ | ENSG00000134480.12 | ENST00000508855 | hsa-miR-1303 | 87394446 | 87394452 | 7mer-m8 | 87394445 | 87394464 | 145 | -11.68 |
CAediting_228905 | chr2_188297554_+ | ENSG00000134480.12 | ENST00000508855 | hsa-miR-561-3p | 87394333 | 87394339 | 7mer-m8 | 87394332 | 87394354 | 154 | -3.7 |
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The effects of the RNA editing to the stability of the RNA structures for CCNH |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_419704 | ENST00000505587.4 | chr5_87392498_- | -448.70 | -448.70 | -449.30 |
CAediting_419705 | ENST00000505587.4 | chr5_87392511_- | -449.30 | -448.70 | -449.30 |
CAediting_419706 | ENST00000505587.4 | chr5_87392512_- | -448.40 | -448.70 | -449.30 |
CAediting_419707 | ENST00000508855.4 | chr5_87394110_- | -543.20 | -540.40 | -548.60 |
CAediting_419708 | ENST00000508855.4 | chr5_87394295_- | -545.90 | -540.40 | -548.60 |
CAediting_419709 | ENST00000508855.4 | chr5_87394299_- | -543.40 | -540.40 | -548.60 |
CAediting_419710 | ENST00000508855.4 | chr5_87394304_- | -540.80 | -540.40 | -548.60 |
CAediting_419708 | ENST00000256897.7 | chr5_87394295_- | -369.80 | -364.30 | -369.90 |
CAediting_419709 | ENST00000256897.7 | chr5_87394299_- | -367.30 | -364.30 | -369.90 |
CAediting_419710 | ENST00000256897.7 | chr5_87394304_- | -364.40 | -364.30 | -369.90 |
CAediting_419724 | ENST00000256897.7 | chr5_87412772_- | -364.80 | -364.30 | -369.90 |
CAediting_419708 | ENST00000504878.1 | chr5_87394295_- | -401.90 | -397.50 | -402.00 |
CAediting_419709 | ENST00000504878.1 | chr5_87394299_- | -399.40 | -397.50 | -402.00 |
CAediting_419710 | ENST00000504878.1 | chr5_87394304_- | -397.70 | -397.50 | -402.00 |
CAediting_419724 | ENST00000504878.1 | chr5_87412772_- | -397.70 | -397.50 | -402.00 |
CAediting_419708 | ENST00000511207.4 | chr5_87394295_- | -81.90 | -77.90 | -82.70 |
CAediting_419709 | ENST00000511207.4 | chr5_87394299_- | -80.20 | -77.90 | -82.70 |
CAediting_419710 | ENST00000511207.4 | chr5_87394304_- | -78.60 | -77.90 | -82.70 |
CAediting_419724 | ENST00000513499.4 | chr5_87412772_- | -168.20 | -168.50 | -168.20 |
CAediting_419724 | ENST00000505230.1 | chr5_87412772_- | -146.50 | -146.90 | -146.50 |
CAediting_419724 | ENST00000510020.4 | chr5_87412772_- | -158.10 | -157.20 | -158.10 |
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Relation with ADAR for CCNH |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for CCNH |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for CCNH |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CCNH |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CCNH |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
CCNH | C0006142 | Malignant neoplasm of breast | 1 | CTD_human |
CCNH | C0007097 | Carcinoma | 1 | CTD_human |
CCNH | C0007102 | Malignant tumor of colon | 1 | CTD_human |
CCNH | C0007131 | Non-Small Cell Lung Carcinoma | 1 | CTD_human |
CCNH | C0009375 | Colonic Neoplasms | 1 | CTD_human |
CCNH | C0014859 | Esophageal Neoplasms | 1 | CTD_human |
CCNH | C0017636 | Glioblastoma | 1 | CTD_human |
CCNH | C0023903 | Liver neoplasms | 1 | CTD_human |
CCNH | C0024232 | Lymphatic Metastasis | 1 | CTD_human |
CCNH | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
CCNH | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |
CCNH | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
CCNH | C0205696 | Anaplastic carcinoma | 1 | CTD_human |
CCNH | C0205697 | Carcinoma, Spindle-Cell | 1 | CTD_human |
CCNH | C0205698 | Undifferentiated carcinoma | 1 | CTD_human |
CCNH | C0205699 | Carcinomatosis | 1 | CTD_human |
CCNH | C0334588 | Giant Cell Glioblastoma | 1 | CTD_human |
CCNH | C0345904 | Malignant neoplasm of liver | 1 | CTD_human |
CCNH | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
CCNH | C0546837 | Malignant neoplasm of esophagus | 1 | CTD_human |
CCNH | C0678222 | Breast Carcinoma | 1 | CTD_human |
CCNH | C0919267 | ovarian neoplasm | 1 | CTD_human |
CCNH | C1140680 | Malignant neoplasm of ovary | 1 | CTD_human |
CCNH | C1257925 | Mammary Carcinoma, Animal | 1 | CTD_human |
CCNH | C1257931 | Mammary Neoplasms, Human | 1 | CTD_human |
CCNH | C1458155 | Mammary Neoplasms | 1 | CTD_human |
CCNH | C1621958 | Glioblastoma Multiforme | 1 | CTD_human |
CCNH | C4704874 | Mammary Carcinoma, Human | 1 | CTD_human |