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Editing gene: CCDC120 (CAeditome ID:90060)

Gene summary for CCDC120

Gene summary

Gene information	Gene symbol	CCDC120
	Gene ID	90060
	Gene name	coiled-coil domain containing 120
	Synonyms	JM11
	Cytomap	Xp11.23
	Type of gene	protein-coding
	Description	coiled-coil domain-containing protein 120
	Modification date	20210518
	UniProtAcc	Q96HB5
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
CCDC120	GO:0005814	Coiled-coil domain-containing protein 120	28422092
CCDC120	GO:0120103	Coiled-coil domain-containing protein 120	28422092

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RNA A-to-I events for CCDC120

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000147144.11

RNA A-to-I editing events in Cancer.

CAediting_1507327(49060281, +), CAediting_1507328(49060297, +), CAediting_1507329(49063303, +), CAediting_1507330(49065968, +), CAediting_1507331(49065973, +), CAediting_1507332(49066058, +), CAediting_1507333(49066063, +), CAediting_1507334(49066076, +), CAediting_1507335(49066102, +), CAediting_1507336(49066103, +), CAediting_1507337(49066112, +), CAediting_1507338(49068118, +), CAediting_1507339(49069398, +), CAediting_1507340(49069402, +), CAediting_1507341(49069416, +), CAediting_1507342(49069419, +), CAediting_1507343(49069439, +), CAediting_1507344(49069445, +), CAediting_1507345(49069456, +), CAediting_1507346(49069496, +), CAediting_1507347(49069506, +), CAediting_1507348(49069508, +), CAediting_1507349(49069512, +), CAediting_1507350(49069514, +), CAediting_1507351(49069519, +), CAediting_1507352(49069532, +), CAediting_1507353(49069533, +), CAediting_1507354(49069541, +), CAediting_1507355(49069547, +), CAediting_1507356(49069557, +), CAediting_1507357(49069567, +), CAediting_1507358(49069569, +), CAediting_1507359(49069576, +), CAediting_1507360(49069589, +), CAediting_1507361(49069604, +), CAediting_1507362(49069626, +), CAediting_1507363(49069627, +), CAediting_1507364(49069639, +), CAediting_1507365(49069641, +),

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RNA editing positional annotations for CCDC120 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1507327	chrX_49060281_+	intronic
CAediting_1507328	chrX_49060297_+	intronic
CAediting_1507329	chrX_49063303_+	intronic
CAediting_1507330	chrX_49065968_+	intronic
CAediting_1507331	chrX_49065973_+	intronic
CAediting_1507332	chrX_49066058_+	intronic
CAediting_1507333	chrX_49066063_+	intronic
CAediting_1507334	chrX_49066076_+	intronic
CAediting_1507335	chrX_49066102_+	intronic
CAediting_1507336	chrX_49066103_+	intronic
CAediting_1507337	chrX_49066112_+	intronic
CAediting_1507338	chrX_49068118_+	ncRNA_exonic
CAediting_1507339	chrX_49069398_+	UTR3
CAediting_1507340	chrX_49069402_+	UTR3
CAediting_1507341	chrX_49069416_+	UTR3
CAediting_1507342	chrX_49069419_+	UTR3
CAediting_1507343	chrX_49069439_+	UTR3
CAediting_1507344	chrX_49069445_+	UTR3
CAediting_1507345	chrX_49069456_+	UTR3
CAediting_1507346	chrX_49069496_+	UTR3
CAediting_1507347	chrX_49069506_+	UTR3
CAediting_1507348	chrX_49069508_+	UTR3
CAediting_1507349	chrX_49069512_+	UTR3
CAediting_1507350	chrX_49069514_+	UTR3
CAediting_1507351	chrX_49069519_+	UTR3
CAediting_1507352	chrX_49069532_+	UTR3
CAediting_1507353	chrX_49069533_+	UTR3
CAediting_1507354	chrX_49069541_+	UTR3
CAediting_1507355	chrX_49069547_+	UTR3
CAediting_1507356	chrX_49069557_+	UTR3
CAediting_1507357	chrX_49069567_+	UTR3
CAediting_1507358	chrX_49069569_+	UTR3
CAediting_1507359	chrX_49069576_+	UTR3
CAediting_1507360	chrX_49069589_+	UTR3
CAediting_1507361	chrX_49069604_+	UTR3
CAediting_1507362	chrX_49069626_+	UTR3
CAediting_1507363	chrX_49069627_+	UTR3
CAediting_1507364	chrX_49069639_+	UTR3
CAediting_1507365	chrX_49069641_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1507327	chrX_49060281_+	SINE	Alu	AluSx
CAediting_1507328	chrX_49060297_+	SINE	Alu	AluSx
CAediting_1507329	chrX_49063303_+	SINE	Alu	AluSp
CAediting_1507330	chrX_49065968_+	SINE	Alu	AluSq2
CAediting_1507331	chrX_49065973_+	SINE	Alu	AluSq2
CAediting_1507332	chrX_49066058_+	SINE	Alu	AluSq2
CAediting_1507333	chrX_49066063_+	SINE	Alu	AluSq2
CAediting_1507334	chrX_49066076_+	SINE	Alu	AluSq2
CAediting_1507335	chrX_49066102_+	SINE	Alu	AluSq2
CAediting_1507336	chrX_49066103_+	SINE	Alu	AluSq2
CAediting_1507337	chrX_49066112_+	SINE	Alu	AluSq2
CAediting_1507339	chrX_49069398_+	SINE	Alu	AluSg
CAediting_1507340	chrX_49069402_+	SINE	Alu	AluSg
CAediting_1507341	chrX_49069416_+	SINE	Alu	AluSg
CAediting_1507342	chrX_49069419_+	SINE	Alu	AluSg
CAediting_1507343	chrX_49069439_+	SINE	Alu	AluSg
CAediting_1507344	chrX_49069445_+	SINE	Alu	AluSg
CAediting_1507345	chrX_49069456_+	SINE	Alu	AluSg
CAediting_1507346	chrX_49069496_+	SINE	Alu	AluSg
CAediting_1507347	chrX_49069506_+	SINE	Alu	AluSg
CAediting_1507348	chrX_49069508_+	SINE	Alu	AluSg
CAediting_1507349	chrX_49069512_+	SINE	Alu	AluSg
CAediting_1507350	chrX_49069514_+	SINE	Alu	AluSg
CAediting_1507351	chrX_49069519_+	SINE	Alu	AluSg
CAediting_1507352	chrX_49069532_+	SINE	Alu	AluSg
CAediting_1507353	chrX_49069533_+	SINE	Alu	AluSg
CAediting_1507354	chrX_49069541_+	SINE	Alu	AluSg
CAediting_1507355	chrX_49069547_+	SINE	Alu	AluSg
CAediting_1507356	chrX_49069557_+	SINE	Alu	AluSg
CAediting_1507357	chrX_49069567_+	SINE	Alu	AluSg
CAediting_1507358	chrX_49069569_+	SINE	Alu	AluSg
CAediting_1507359	chrX_49069576_+	SINE	Alu	AluSg
CAediting_1507360	chrX_49069589_+	SINE	Alu	AluSg
CAediting_1507361	chrX_49069604_+	SINE	Alu	AluSg
CAediting_1507362	chrX_49069626_+	SINE	Alu	AluSg
CAediting_1507363	chrX_49069627_+	SINE	Alu	AluSg
CAediting_1507364	chrX_49069639_+	SINE	Alu	AluSg
CAediting_1507365	chrX_49069641_+	SINE	Alu	AluSg

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RNA A-to-I editing events in the alternative splicing sites for CCDC120

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000147144.11.CCDC120.

Correlation between RNA A-to-I editing and PSI for ENSG00000147144.11.CCDC120.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CCDC120

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CCDC120

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CCDC120

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1507344	chrX_49069445_+	ENSG00000147144.11	ENST00000606812	hsa-miR-4537	49069442	49069449	8mer-1a	49069427	49069449	151.00	-27.37
CAediting_1507346	chrX_49069496_+	ENSG00000147144.11	ENST00000606812	hsa-miR-4691-3p	49069493	49069499	7mer-m8	49069476	49069500	150.00	-26.39
CAediting_1507356	chrX_49069557_+	ENSG00000147144.11	ENST00000606812	hsa-miR-10a-5p	49069553	49069559	7mer-m8	49069538	49069560	145.00	-13.78
CAediting_1507356	chrX_49069557_+	ENSG00000147144.11	ENST00000606812	hsa-miR-10b-5p	49069553	49069559	7mer-m8	49069538	49069560	140.00	-13.78
CAediting_1507356	chrX_49069557_+	ENSG00000147144.11	ENST00000606812	hsa-miR-339-5p	49069552	49069558	7mer-m8	49069535	49069559	155.00	-21.07
CAediting_1507356	chrX_49069557_+	ENSG00000147144.11	ENST00000606812	hsa-miR-4421	49069551	49069557	7mer-m8	49069537	49069558	158.00	-18.58
CAediting_1507356	chrX_49069557_+	ENSG00000147144.11	ENST00000606812	hsa-miR-5699-3p	49069551	49069557	7mer-m8	49069537	49069558	153.00	-19.55
CAediting_1507356	chrX_49069557_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6732-3p	49069554	49069560	7mer-m8	49069540	49069561	158.00	-19.01
CAediting_1507340	chrX_49069402_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3667-5p	49069400	49069406	7mer-m8	49069383	49069407	159.00	-24.68
CAediting_1507341	chrX_49069416_+	ENSG00000147144.11	ENST00000606812	hsa-miR-1273c	49069411	49069416	6mer	49069396	49069417	144.00	-29.32
CAediting_1507342	chrX_49069419_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3940-3p	49069416	49069422	7mer-m8	49069403	49069423	149.00	-22.35
CAediting_1507342	chrX_49069419_+	ENSG00000147144.11	ENST00000606812	hsa-miR-4783-3p	49069414	49069420	7mer-m8	49069399	49069421	165.00	-26.36
CAediting_1507345	chrX_49069456_+	ENSG00000147144.11	ENST00000606812	hsa-miR-17-3p	49069449	49069455	7mer-m8	49069435	49069456	150.00	-16.60
CAediting_1507345	chrX_49069456_+	ENSG00000147144.11	ENST00000606812	hsa-miR-485-5p	49069453	49069459	7mer-m8	49069437	49069460	156.00	-19.66
CAediting_1507345	chrX_49069456_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6884-5p	49069453	49069459	7mer-m8	49069437	49069460	154.00	-26.14
CAediting_1507349	chrX_49069512_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6720-3p	49069506	49069513	8mer-1a	49069492	49069513	148.00	-19.38
CAediting_1507351	chrX_49069519_+	ENSG00000147144.11	ENST00000606812	hsa-miR-10400-5p	49069514	49069521	8mer-1a	49069500	49069521	149.00	-24.43
CAediting_1507351	chrX_49069519_+	ENSG00000147144.11	ENST00000606812	hsa-miR-4467	49069514	49069521	8mer-1a	49069499	49069521	147.00	-22.28
CAediting_1507351	chrX_49069519_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6770-3p	49069515	49069521	7mer-m8	49069501	49069522	162.00	-24.66
CAediting_1507351	chrX_49069519_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6770-3p	49069515	49069521	7mer-m8	49069501	49069522	162.00	-24.66
CAediting_1507351	chrX_49069519_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6770-3p	49069515	49069521	7mer-m8	49069501	49069522	162.00	-24.66
CAediting_1507352	chrX_49069532_+	ENSG00000147144.11	ENST00000606812	hsa-miR-34a-3p	49069528	49069534	7mer-m8	49069513	49069535	147.00	-11.29
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548ae-3p	49069531	49069537	7mer-m8	49069518	49069538	141.00	-10.65
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548ae-3p	49069531	49069537	7mer-m8	49069518	49069538	141.00	-10.65
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548ah-3p	49069531	49069537	7mer-m8	49069516	49069538	143.00	-11.29
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548aj-3p	49069531	49069537	7mer-m8	49069518	49069538	141.00	-8.54
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548aj-3p	49069531	49069537	7mer-m8	49069518	49069538	141.00	-8.54
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548am-3p	49069531	49069537	7mer-m8	49069516	49069538	143.00	-10.65
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548aq-3p	49069531	49069537	7mer-m8	49069517	49069538	141.00	-10.72
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548j-3p	49069531	49069537	7mer-m8	49069518	49069538	141.00	-10.65
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548x-3p	49069531	49069537	7mer-m8	49069519	49069538	141.00	-8.54
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548x-3p	49069531	49069537	7mer-m8	49069519	49069538	141.00	-8.54
CAediting_1507353	chrX_49069533_+	ENSG00000147144.11	ENST00000606812	hsa-miR-7844-5p	49069529	49069535	7mer-m8	49069515	49069536	160.00	-17.71
CAediting_1507357	chrX_49069567_+	ENSG00000147144.11	ENST00000606812	hsa-miR-433-5p	49069561	49069568	8mer-1a	49069545	49069568	162.00	-26.10
CAediting_1507359	chrX_49069576_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3940-3p	49069573	49069579	7mer-m8	49069559	49069580	140.00	-22.76
CAediting_1507360	chrX_49069589_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3670	49069585	49069591	7mer-m8	49069569	49069592	154.00	-20.80
CAediting_1507360	chrX_49069589_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3670	49069585	49069591	7mer-m8	49069569	49069592	154.00	-20.80
CAediting_1507360	chrX_49069589_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3670	49069585	49069591	7mer-m8	49069569	49069592	154.00	-20.80
CAediting_1507360	chrX_49069589_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3670	49069585	49069591	7mer-m8	49069569	49069592	154.00	-20.80
CAediting_1507362	chrX_49069626_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3192-5p	49069619	49069626	8mer-1a	49069604	49069626	154.00	-26.97
CAediting_1507362	chrX_49069626_+	ENSG00000147144.11	ENST00000606812	hsa-miR-326	49069621	49069627	7mer-m8	49069609	49069628	140.00	-14.14
CAediting_1507362	chrX_49069626_+	ENSG00000147144.11	ENST00000606812	hsa-miR-330-5p	49069621	49069627	7mer-m8	49069607	49069628	140.00	-22.24
CAediting_1507362	chrX_49069626_+	ENSG00000147144.11	ENST00000606812	hsa-miR-4314	49069620	49069626	7mer-m8	49069610	49069627	140.00	-18.79
CAediting_1507362	chrX_49069626_+	ENSG00000147144.11	ENST00000606812	hsa-miR-514a-5p	49069622	49069628	7mer-m8	49069609	49069629	154.00	-19.80
CAediting_1507362	chrX_49069626_+	ENSG00000147144.11	ENST00000606812	hsa-miR-514a-5p	49069622	49069628	7mer-m8	49069609	49069629	154.00	-19.80
CAediting_1507362	chrX_49069626_+	ENSG00000147144.11	ENST00000606812	hsa-miR-514a-5p	49069622	49069628	7mer-m8	49069609	49069629	154.00	-19.80
CAediting_1507363	chrX_49069627_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3189-3p	49069621	49069627	7mer-m8	49069606	49069628	145.00	-20.77
CAediting_1507363	chrX_49069627_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6813-3p	49069622	49069628	7mer-m8	49069609	49069629	140.00	-15.63
CAediting_1507364	chrX_49069639_+	ENSG00000147144.11	ENST00000606812	hsa-miR-106a-3p	49069635	49069640	6mer	49069620	49069641	141.00	-21.13

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1507348	chrX_49069508_+	ENSG00000147144.11	ENST00000606812	hsa-miR-1271-3p	49069506	49069513	8mer-1a	49069494	49069513	155	-21.02
CAediting_1507349	chrX_49069512_+	ENSG00000147144.11	ENST00000606812	hsa-miR-1271-3p	49069506	49069513	8mer-1a	49069494	49069513	155	-21.02
CAediting_1507361	chrX_49069604_+	ENSG00000147144.11	ENST00000606812	hsa-miR-1288-5p	49069601	49069607	7mer-m8	49069586	49069608	149	-15.56
CAediting_1507344	chrX_49069445_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3160-3p	49069442	49069449	8mer-1a	49069428	49069449	152	-19.51
CAediting_1507344	chrX_49069445_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3160-3p	49069442	49069449	8mer-1a	49069428	49069449	152	-19.51
CAediting_1507359	chrX_49069576_+	ENSG00000147144.11	ENST00000606812	hsa-miR-3190-5p	49069570	49069576	7mer-m8	49069559	49069577	144	-16.24
CAediting_1507339	chrX_49069398_+	ENSG00000147144.11	ENST00000606812	hsa-miR-340-3p	49069394	49069401	8mer-1a	49069379	49069401	141	-17.1
CAediting_1507345	chrX_49069456_+	ENSG00000147144.11	ENST00000606812	hsa-miR-377-5p	49069453	49069459	7mer-m8	49069437	49069460	154	-19.16
CAediting_1507340	chrX_49069402_+	ENSG00000147144.11	ENST00000606812	hsa-miR-4432	49069400	49069406	7mer-m8	49069388	49069407	146	-13.78
CAediting_1507343	chrX_49069439_+	ENSG00000147144.11	ENST00000606812	hsa-miR-5186	49069437	49069444	8mer-1a	49069424	49069444	140	-10.22
CAediting_1507341	chrX_49069416_+	ENSG00000147144.11	ENST00000606812	hsa-miR-542-3p	49069410	49069416	7mer-m8	49069397	49069417	152	-15.72
CAediting_1507359	chrX_49069576_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548s	49069569	49069575	7mer-m8	49069552	49069576	143	-12.53
CAediting_1507348	chrX_49069508_+	ENSG00000147144.11	ENST00000606812	hsa-miR-550a-3-5p	49069506	49069513	8mer-1a	49069494	49069513	140	-13.98
CAediting_1507349	chrX_49069512_+	ENSG00000147144.11	ENST00000606812	hsa-miR-550a-3-5p	49069506	49069513	8mer-1a	49069494	49069513	140	-13.98
CAediting_1507348	chrX_49069508_+	ENSG00000147144.11	ENST00000606812	hsa-miR-550a-5p	49069506	49069513	8mer-1a	49069491	49069513	140	-17.77
CAediting_1507349	chrX_49069512_+	ENSG00000147144.11	ENST00000606812	hsa-miR-550a-5p	49069506	49069513	8mer-1a	49069491	49069513	140	-17.77
CAediting_1507348	chrX_49069508_+	ENSG00000147144.11	ENST00000606812	hsa-miR-550a-5p	49069506	49069513	8mer-1a	49069491	49069513	140	-17.77
CAediting_1507349	chrX_49069512_+	ENSG00000147144.11	ENST00000606812	hsa-miR-550a-5p	49069506	49069513	8mer-1a	49069491	49069513	140	-17.77
CAediting_1507349	chrX_49069512_+	ENSG00000147144.11	ENST00000606812	hsa-miR-550b-2-5p	49069507	49069513	7mer-m8	49069493	49069514	145	-15.62
CAediting_1507350	chrX_49069514_+	ENSG00000147144.11	ENST00000606812	hsa-miR-550b-2-5p	49069507	49069513	7mer-m8	49069493	49069514	145	-15.62
CAediting_1507349	chrX_49069512_+	ENSG00000147144.11	ENST00000606812	hsa-miR-550b-2-5p	49069507	49069513	7mer-m8	49069493	49069514	145	-15.62
CAediting_1507350	chrX_49069514_+	ENSG00000147144.11	ENST00000606812	hsa-miR-550b-2-5p	49069507	49069513	7mer-m8	49069493	49069514	145	-15.62
CAediting_1507357	chrX_49069567_+	ENSG00000147144.11	ENST00000606812	hsa-miR-5583-3p	49069564	49069570	7mer-m8	49069549	49069571	151	-9.93
CAediting_1507358	chrX_49069569_+	ENSG00000147144.11	ENST00000606812	hsa-miR-5583-3p	49069564	49069570	7mer-m8	49069549	49069571	151	-9.93
CAediting_1507357	chrX_49069567_+	ENSG00000147144.11	ENST00000606812	hsa-miR-5583-3p	49069564	49069570	7mer-m8	49069549	49069571	151	-9.93
CAediting_1507358	chrX_49069569_+	ENSG00000147144.11	ENST00000606812	hsa-miR-5583-3p	49069564	49069570	7mer-m8	49069549	49069571	151	-9.93
CAediting_1507346	chrX_49069496_+	ENSG00000147144.11	ENST00000606812	hsa-miR-5690	49069493	49069499	7mer-m8	49069480	49069500	145	-16.75
CAediting_1507345	chrX_49069456_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6086	49069453	49069459	7mer-m8	49069441	49069460	150	-20.67
CAediting_1507354	chrX_49069541_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6507-5p	49069539	49069546	8mer-1a	49069526	49069546	146	-9.35
CAediting_1507345	chrX_49069456_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6516-5p	49069449	49069455	7mer-m8	49069437	49069456	148	-12.72
CAediting_1507339	chrX_49069398_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6827-3p	49069394	49069401	8mer-1a	49069381	49069401	140	-14.46
CAediting_1507362	chrX_49069626_+	ENSG00000147144.11	ENST00000606812	hsa-miR-887-5p	49069619	49069626	8mer-1a	49069606	49069626	147	-13.95

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1054808	chr15_66496985_-	ENSG00000147144.11	ENST00000606812	hsa-miR-4512	49069270	49069277	8mer-1a	49069257	49069277	152	-22.71
CAediting_1054808	chr15_66496985_-	ENSG00000147144.11	ENST00000606812	hsa-miR-4512	49068785	49068791	7mer-m8	49068771	49068792	140	-13.99
CAediting_1229414	chr17_67471546_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548aa	49069579	49069585	7mer-m8	49069562	49069586	140	-12.74
CAediting_1229415	chr17_67471547_+	ENSG00000147144.11	ENST00000606812	hsa-miR-548aa	49069364	49069370	7mer-m8	49069347	49069371	140	-7.43
CAediting_86358	chr1_109598906_+	ENSG00000147144.11	ENST00000606812	hsa-miR-197-5p	49069374	49069380	7mer-m8	49069357	49069381	160	-30.18
CAediting_77128	chr1_85133844_+	ENSG00000147144.11	ENST00000606812	hsa-miR-4423-3p	49069233	49069239	7mer-m8	49069220	49069240	140	-13.6
CAediting_228905	chr2_188297554_+	ENSG00000147144.11	ENST00000606812	hsa-miR-561-3p	49069587	49069592	6mer	49069570	49069593	153	-20.38
CAediting_524911	chr7_5495852_-	ENSG00000147144.11	ENST00000606812	hsa-miR-589-3p	49069406	49069412	7mer-m8	49069389	49069413	162	-21.26
CAediting_77128	chr1_85133844_+	ENSG00000147144.11	ENST00000603906	hsa-miR-4423-3p	49063886	49063892	7mer-m8	49063872	49063893	146	-16.23
CAediting_1368054	chr19_46709310_-	ENSG00000147144.11	ENST00000603906	hsa-miR-320e	49065833	49065839	7mer-m8	49065823	49065840	145	-19.16
CAediting_1054808	chr15_66496985_-	ENSG00000147144.11	ENST00000603906	hsa-miR-4512	49067454	49067460	7mer-m8	49067441	49067461	148	-20.21
CAediting_1054808	chr15_66496985_-	ENSG00000147144.11	ENST00000603906	hsa-miR-4512	49068027	49068032	6mer	49068013	49068033	146	-25.65
CAediting_1054808	chr15_66496985_-	ENSG00000147144.11	ENST00000603906	hsa-miR-4512	49068785	49068791	7mer-m8	49068771	49068792	140	-13.99
CAediting_468389	chr6_31355314_-	ENSG00000147144.11	ENST00000603906	hsa-miR-6891-5p	49067439	49067444	6mer	49067427	49067445	141	-29.62

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1306323	chr19_13836462_-	ENSG00000147144.11	ENST00000606812	hsa-miR-27a-3p	49068992	49068998	7mer-m8	49068979	49068999	141	-12.59
CAediting_1306324	chr19_13836464_-	ENSG00000147144.11	ENST00000606812	hsa-miR-27a-3p	49068992	49068998	7mer-m8	49068979	49068999	141	-12.59
CAediting_580943	chr7_100356700_+	ENSG00000147144.11	ENST00000606812	hsa-miR-6840-3p	49069464	49069470	7mer-m8	49069450	49069471	140	-22.98
CAediting_1054808	chr15_66496985_-	ENSG00000147144.11	ENST00000603906	hsa-miR-4512	49064383	49064388	6mer	49064369	49064389	150	-24.68
CAediting_1054808	chr15_66496985_-	ENSG00000147144.11	ENST00000603906	hsa-miR-4512	49067303	49067309	7mer-m8	49067286	49067310	153	-26.14
CAediting_1054808	chr15_66496985_-	ENSG00000147144.11	ENST00000603906	hsa-miR-4512	49067790	49067796	7mer-m8	49067777	49067797	143	-21.35
CAediting_1524209	chrX_134546392_-	ENSG00000147144.11	ENST00000603906	hsa-miR-503-5p	49067995	49068002	8mer-1a	49067980	49068002	152	-22.24

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for CCDC120

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for CCDC120

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LUAD	CAediting_1507346	chrX_49069496_+	0.0133976752501654	0.331584745519999	.	.	0.035912851900468	0.283560682126125

Top

Relation with cancer stages for CCDC120

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for CCDC120

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for CCDC120

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for CCDC120

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene