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Editing gene: LIMD1 (CAeditome ID:8994)

Gene summary for LIMD1

Gene summary

Gene information	Gene symbol	LIMD1
	Gene ID	8994
	Gene name	LIM domain containing 1
	Synonyms	-
	Cytomap	3p21.31
	Type of gene	protein-coding
	Description	LIM domain-containing protein 1LIM domains containing 1
	Modification date	20210518
	UniProtAcc	Q9UGP4
	Context	- 33869018(Algorithm-Based Meta-Analysis Reveals the Mechanistic Interaction of the Tumor Suppressor LIMD1 With Non-Small-Cell Lung Carcinoma)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
LIMD1	GO:0001666	LIM domain-containing protein 1	22286099
LIMD1	GO:0016310	LIM domain-containing protein 1	18439753
LIMD1	GO:0035331	LIM domain-containing protein 1	20303269
LIMD1	GO:0045892	LIM domain-containing protein 1	15542589
LIMD1	GO:0000932	LIM domain-containing protein 1	20616046
LIMD1	GO:0005634	LIM domain-containing protein 1	15542589
LIMD1	GO:0005634	LIM domain-containing protein 1	18439753
LIMD1	GO:0005654	LIM domain-containing protein 1	0000052
LIMD1	GO:0005737	LIM domain-containing protein 1	15542589
LIMD1	GO:0005737	LIM domain-containing protein 1	18439753
LIMD1	GO:0005886	LIM domain-containing protein 1	0000052
LIMD1	GO:0005912	LIM domain-containing protein 1	20303269
LIMD1	GO:0005925	LIM domain-containing protein 1	0000052
LIMD1	GO:0005925	LIM domain-containing protein 1	18439753
LIMD1	GO:0016442	LIM domain-containing protein 1	20616046

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RNA A-to-I events for LIMD1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000144791.8

RNA A-to-I editing events in Cancer.

CAediting_271052(45577489, +), CAediting_271053(45577503, +), CAediting_271054(45577511, +), CAediting_271055(45595040, +), CAediting_271056(45600863, +), CAediting_271057(45600877, +), CAediting_271058(45600878, +), CAediting_271059(45600984, +), CAediting_271060(45603731, +), CAediting_271061(45608661, +), CAediting_271062(45612133, +), CAediting_271063(45612154, +), CAediting_271064(45612185, +), CAediting_271065(45613759, +), CAediting_271066(45613760, +), CAediting_271067(45614273, +), CAediting_271068(45614278, +), CAediting_271069(45614380, +), CAediting_271070(45614485, +), CAediting_271071(45614513, +), CAediting_271072(45614576, +), CAediting_271073(45614602, +), CAediting_271074(45614643, +), CAediting_271075(45615498, +), CAediting_271076(45615555, +), CAediting_271077(45615577, +), CAediting_271078(45615579, +), CAediting_271079(45615603, +), CAediting_271080(45615606, +), CAediting_271081(45615609, +), CAediting_271082(45615618, +), CAediting_271083(45615641, +), CAediting_271084(45615645, +), CAediting_271085(45615676, +), CAediting_271086(45615685, +), CAediting_271087(45616818, +), CAediting_271088(45619218, +), CAediting_271089(45620532, +), CAediting_271090(45621323, +), CAediting_271091(45621330, +), CAediting_271092(45621333, +), CAediting_271093(45625484, +), CAediting_271094(45639152, +), CAediting_271095(45643260, +), CAediting_271096(45643362, +), CAediting_271097(45643391, +), CAediting_271098(45643397, +), CAediting_271099(45643400, +), CAediting_271100(45643410, +), CAediting_271101(45643426, +), CAediting_271102(45643434, +), CAediting_271103(45645995, +), CAediting_271104(45646010, +), CAediting_271105(45646012, +), CAediting_271106(45646018, +), CAediting_271107(45646031, +), CAediting_271108(45646033, +), CAediting_271109(45646037, +), CAediting_271110(45646038, +), CAediting_271111(45646039, +), CAediting_271112(45646041, +), CAediting_271113(45646042, +), CAediting_271114(45646043, +), CAediting_271115(45646060, +), CAediting_271116(45646083, +), CAediting_271117(45646639, +), CAediting_271118(45646652, +), CAediting_271119(45646672, +), CAediting_271120(45646673, +), CAediting_271121(45646787, +), CAediting_271122(45651815, +), CAediting_271123(45653654, +), CAediting_271124(45653655, +), CAediting_271125(45653671, +), CAediting_271126(45653681, +), CAediting_271127(45653690, +), CAediting_271128(45653700, +), CAediting_271129(45653704, +), CAediting_271130(45653709, +), CAediting_271131(45653724, +), CAediting_271132(45653734, +), CAediting_271133(45653739, +), CAediting_271134(45653745, +), CAediting_271135(45653749, +), CAediting_271136(45653751, +), CAediting_271137(45653754, +), CAediting_271138(45653757, +), CAediting_271139(45653759, +), CAediting_271140(45653781, +), CAediting_271141(45653789, +), CAediting_271142(45653795, +), CAediting_271143(45653799, +), CAediting_271144(45653803, +), CAediting_271145(45653806, +), CAediting_271146(45653812, +), CAediting_271147(45653819, +), CAediting_271148(45653835, +), CAediting_271149(45653838, +), CAediting_271150(45653855, +), CAediting_271151(45653859, +), CAediting_271152(45653860, +), CAediting_271153(45653862, +), CAediting_271154(45653867, +), CAediting_271155(45653870, +), CAediting_271156(45653897, +), CAediting_271157(45654567, +), CAediting_271158(45654573, +), CAediting_271159(45654574, +), CAediting_271160(45654600, +), CAediting_271161(45654608, +), CAediting_271162(45654643, +), CAediting_271163(45654651, +), CAediting_271164(45654653, +), CAediting_271165(45654667, +), CAediting_271166(45654687, +), CAediting_271167(45654703, +), CAediting_271168(45654719, +), CAediting_271169(45654723, +), CAediting_271170(45654728, +), CAediting_271171(45654734, +), CAediting_271172(45654757, +), CAediting_271173(45655130, +), CAediting_271174(45655155, +), CAediting_271175(45656647, +), CAediting_271176(45657406, +), CAediting_271177(45657412, +), CAediting_271178(45657428, +), CAediting_271179(45657445, +), CAediting_271180(45657450, +), CAediting_271181(45657466, +), CAediting_271182(45657470, +), CAediting_271183(45657504, +), CAediting_271184(45657512, +), CAediting_271185(45657513, +), CAediting_271186(45659333, +), CAediting_271187(45659366, +), CAediting_271188(45659376, +), CAediting_271189(45659403, +), CAediting_271190(45660549, +), CAediting_271191(45660596, +), CAediting_271192(45661782, +), CAediting_271193(45668591, +), CAediting_271194(45668659, +), CAediting_271195(45675261, +), CAediting_271196(45675320, +), CAediting_271197(45675329, +), CAediting_271198(45675359, +), CAediting_271199(45675368, +), CAediting_271200(45675374, +), CAediting_271201(45675760, +), CAediting_271202(45675842, +), CAediting_271203(45675903, +), CAediting_271204(45675998, +),

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RNA editing positional annotations for LIMD1 using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_271055	chr3_45595040_+	nonsynonymous SNV	ENST00000273317.4	c.A161G	p.K54R	D	D	N
CAediting_271055	chr3_45595040_+	nonsynonymous SNV	ENST00000440097.4	c.A161G	p.K54R	D	D	N

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_271052	chr3_45577489_+	ncRNA_intronic
CAediting_271053	chr3_45577503_+	ncRNA_intronic
CAediting_271054	chr3_45577511_+	ncRNA_intronic
CAediting_271055	chr3_45595040_+	exonic
CAediting_271056	chr3_45600863_+	ncRNA_intronic
CAediting_271057	chr3_45600877_+	ncRNA_intronic
CAediting_271058	chr3_45600878_+	ncRNA_intronic
CAediting_271059	chr3_45600984_+	ncRNA_intronic
CAediting_271060	chr3_45603731_+	ncRNA_intronic
CAediting_271061	chr3_45608661_+	ncRNA_intronic
CAediting_271062	chr3_45612133_+	ncRNA_intronic
CAediting_271063	chr3_45612154_+	ncRNA_intronic
CAediting_271064	chr3_45612185_+	ncRNA_intronic
CAediting_271065	chr3_45613759_+	ncRNA_intronic
CAediting_271066	chr3_45613760_+	ncRNA_intronic
CAediting_271067	chr3_45614273_+	ncRNA_intronic
CAediting_271068	chr3_45614278_+	ncRNA_intronic
CAediting_271069	chr3_45614380_+	ncRNA_intronic
CAediting_271070	chr3_45614485_+	ncRNA_intronic
CAediting_271071	chr3_45614513_+	ncRNA_intronic
CAediting_271072	chr3_45614576_+	ncRNA_intronic
CAediting_271073	chr3_45614602_+	ncRNA_intronic
CAediting_271074	chr3_45614643_+	ncRNA_intronic
CAediting_271075	chr3_45615498_+	ncRNA_intronic
CAediting_271076	chr3_45615555_+	ncRNA_intronic
CAediting_271077	chr3_45615577_+	ncRNA_intronic
CAediting_271078	chr3_45615579_+	ncRNA_intronic
CAediting_271079	chr3_45615603_+	ncRNA_intronic
CAediting_271080	chr3_45615606_+	ncRNA_intronic
CAediting_271081	chr3_45615609_+	ncRNA_intronic
CAediting_271082	chr3_45615618_+	ncRNA_intronic
CAediting_271083	chr3_45615641_+	ncRNA_intronic
CAediting_271084	chr3_45615645_+	ncRNA_intronic
CAediting_271085	chr3_45615676_+	ncRNA_intronic
CAediting_271086	chr3_45615685_+	ncRNA_intronic
CAediting_271087	chr3_45616818_+	ncRNA_intronic
CAediting_271088	chr3_45619218_+	ncRNA_intronic
CAediting_271089	chr3_45620532_+	ncRNA_intronic
CAediting_271090	chr3_45621323_+	ncRNA_intronic
CAediting_271091	chr3_45621330_+	ncRNA_intronic
CAediting_271092	chr3_45621333_+	ncRNA_intronic
CAediting_271093	chr3_45625484_+	ncRNA_intronic
CAediting_271094	chr3_45639152_+	ncRNA_intronic
CAediting_271095	chr3_45643260_+	ncRNA_intronic
CAediting_271096	chr3_45643362_+	ncRNA_intronic
CAediting_271097	chr3_45643391_+	ncRNA_intronic
CAediting_271098	chr3_45643397_+	ncRNA_intronic
CAediting_271099	chr3_45643400_+	ncRNA_intronic
CAediting_271100	chr3_45643410_+	ncRNA_intronic
CAediting_271101	chr3_45643426_+	ncRNA_intronic
CAediting_271102	chr3_45643434_+	ncRNA_intronic
CAediting_271103	chr3_45645995_+	ncRNA_intronic
CAediting_271104	chr3_45646010_+	ncRNA_intronic
CAediting_271105	chr3_45646012_+	ncRNA_intronic
CAediting_271106	chr3_45646018_+	ncRNA_intronic
CAediting_271107	chr3_45646031_+	ncRNA_intronic
CAediting_271108	chr3_45646033_+	ncRNA_intronic
CAediting_271109	chr3_45646037_+	ncRNA_intronic
CAediting_271110	chr3_45646038_+	ncRNA_intronic
CAediting_271111	chr3_45646039_+	ncRNA_intronic
CAediting_271112	chr3_45646041_+	ncRNA_intronic
CAediting_271113	chr3_45646042_+	ncRNA_intronic
CAediting_271114	chr3_45646043_+	ncRNA_intronic
CAediting_271115	chr3_45646060_+	ncRNA_intronic
CAediting_271116	chr3_45646083_+	ncRNA_intronic
CAediting_271117	chr3_45646639_+	ncRNA_intronic
CAediting_271118	chr3_45646652_+	ncRNA_intronic
CAediting_271119	chr3_45646672_+	ncRNA_intronic
CAediting_271120	chr3_45646673_+	ncRNA_intronic
CAediting_271121	chr3_45646787_+	ncRNA_intronic
CAediting_271122	chr3_45651815_+	ncRNA_intronic
CAediting_271123	chr3_45653654_+	ncRNA_intronic
CAediting_271124	chr3_45653655_+	ncRNA_intronic
CAediting_271125	chr3_45653671_+	ncRNA_intronic
CAediting_271126	chr3_45653681_+	ncRNA_intronic
CAediting_271127	chr3_45653690_+	ncRNA_intronic
CAediting_271128	chr3_45653700_+	ncRNA_intronic
CAediting_271129	chr3_45653704_+	ncRNA_intronic
CAediting_271130	chr3_45653709_+	ncRNA_intronic
CAediting_271131	chr3_45653724_+	ncRNA_intronic
CAediting_271132	chr3_45653734_+	ncRNA_intronic
CAediting_271133	chr3_45653739_+	ncRNA_intronic
CAediting_271134	chr3_45653745_+	ncRNA_intronic
CAediting_271135	chr3_45653749_+	ncRNA_intronic
CAediting_271136	chr3_45653751_+	ncRNA_intronic
CAediting_271137	chr3_45653754_+	ncRNA_intronic
CAediting_271138	chr3_45653757_+	ncRNA_intronic
CAediting_271139	chr3_45653759_+	ncRNA_intronic
CAediting_271140	chr3_45653781_+	ncRNA_intronic
CAediting_271141	chr3_45653789_+	ncRNA_intronic
CAediting_271142	chr3_45653795_+	ncRNA_intronic
CAediting_271143	chr3_45653799_+	ncRNA_intronic
CAediting_271144	chr3_45653803_+	ncRNA_intronic
CAediting_271145	chr3_45653806_+	ncRNA_intronic
CAediting_271146	chr3_45653812_+	ncRNA_intronic
CAediting_271147	chr3_45653819_+	ncRNA_intronic
CAediting_271148	chr3_45653835_+	ncRNA_intronic
CAediting_271149	chr3_45653838_+	ncRNA_intronic
CAediting_271150	chr3_45653855_+	ncRNA_intronic
CAediting_271151	chr3_45653859_+	ncRNA_intronic
CAediting_271152	chr3_45653860_+	ncRNA_intronic
CAediting_271153	chr3_45653862_+	ncRNA_intronic
CAediting_271154	chr3_45653867_+	ncRNA_intronic
CAediting_271155	chr3_45653870_+	ncRNA_intronic
CAediting_271156	chr3_45653897_+	ncRNA_intronic
CAediting_271157	chr3_45654567_+	ncRNA_intronic
CAediting_271158	chr3_45654573_+	ncRNA_intronic
CAediting_271159	chr3_45654574_+	ncRNA_intronic
CAediting_271160	chr3_45654600_+	ncRNA_intronic
CAediting_271161	chr3_45654608_+	ncRNA_intronic
CAediting_271162	chr3_45654643_+	ncRNA_intronic
CAediting_271163	chr3_45654651_+	ncRNA_intronic
CAediting_271164	chr3_45654653_+	ncRNA_intronic
CAediting_271165	chr3_45654667_+	ncRNA_intronic
CAediting_271166	chr3_45654687_+	ncRNA_intronic
CAediting_271167	chr3_45654703_+	ncRNA_intronic
CAediting_271168	chr3_45654719_+	ncRNA_intronic
CAediting_271169	chr3_45654723_+	ncRNA_intronic
CAediting_271170	chr3_45654728_+	ncRNA_intronic
CAediting_271171	chr3_45654734_+	ncRNA_intronic
CAediting_271172	chr3_45654757_+	ncRNA_intronic
CAediting_271173	chr3_45655130_+	ncRNA_intronic
CAediting_271174	chr3_45655155_+	ncRNA_intronic
CAediting_271175	chr3_45656647_+	ncRNA_intronic
CAediting_271176	chr3_45657406_+	ncRNA_intronic
CAediting_271177	chr3_45657412_+	ncRNA_intronic
CAediting_271178	chr3_45657428_+	ncRNA_intronic
CAediting_271179	chr3_45657445_+	ncRNA_intronic
CAediting_271180	chr3_45657450_+	ncRNA_intronic
CAediting_271181	chr3_45657466_+	ncRNA_intronic
CAediting_271182	chr3_45657470_+	ncRNA_intronic
CAediting_271183	chr3_45657504_+	ncRNA_intronic
CAediting_271184	chr3_45657512_+	ncRNA_intronic
CAediting_271185	chr3_45657513_+	ncRNA_intronic
CAediting_271186	chr3_45659333_+	ncRNA_intronic
CAediting_271187	chr3_45659366_+	ncRNA_intronic
CAediting_271188	chr3_45659376_+	ncRNA_intronic
CAediting_271189	chr3_45659403_+	ncRNA_intronic
CAediting_271190	chr3_45660549_+	ncRNA_intronic
CAediting_271191	chr3_45660596_+	ncRNA_intronic
CAediting_271192	chr3_45661782_+	ncRNA_intronic
CAediting_271193	chr3_45668591_+	ncRNA_intronic
CAediting_271194	chr3_45668659_+	ncRNA_intronic
CAediting_271195	chr3_45675261_+	intronic
CAediting_271196	chr3_45675320_+	intronic
CAediting_271197	chr3_45675329_+	intronic
CAediting_271198	chr3_45675359_+	intronic
CAediting_271199	chr3_45675368_+	intronic
CAediting_271200	chr3_45675374_+	intronic
CAediting_271201	chr3_45675760_+	intronic
CAediting_271202	chr3_45675842_+	intronic
CAediting_271203	chr3_45675903_+	intronic
CAediting_271204	chr3_45675998_+	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_271052	chr3_45577489_+	SINE	Alu	AluSq2
CAediting_271053	chr3_45577503_+	SINE	Alu	AluSq2
CAediting_271054	chr3_45577511_+	SINE	Alu	AluSq2
CAediting_271056	chr3_45600863_+	SINE	Alu	AluJo
CAediting_271057	chr3_45600877_+	SINE	Alu	AluJo
CAediting_271058	chr3_45600878_+	SINE	Alu	AluJo
CAediting_271059	chr3_45600984_+	SINE	Alu	AluJo
CAediting_271060	chr3_45603731_+	SINE	Alu	AluJb
CAediting_271061	chr3_45608661_+	SINE	Alu	AluSz
CAediting_271062	chr3_45612133_+	SINE	Alu	AluJo
CAediting_271063	chr3_45612154_+	SINE	Alu	AluJo
CAediting_271064	chr3_45612185_+	SINE	Alu	AluJo
CAediting_271065	chr3_45613759_+	SINE	Alu	AluJr
CAediting_271066	chr3_45613760_+	SINE	Alu	AluJr
CAediting_271067	chr3_45614273_+	SINE	Alu	AluYi6_4d
CAediting_271068	chr3_45614278_+	SINE	Alu	AluYi6_4d
CAediting_271069	chr3_45614380_+	SINE	Alu	AluYi6_4d
CAediting_271070	chr3_45614485_+	SINE	Alu	AluJb
CAediting_271071	chr3_45614513_+	SINE	Alu	AluJb
CAediting_271072	chr3_45614576_+	SINE	Alu	AluJb
CAediting_271073	chr3_45614602_+	SINE	Alu	AluJb
CAediting_271074	chr3_45614643_+	SINE	Alu	AluJb
CAediting_271075	chr3_45615498_+	SINE	Alu	AluJb
CAediting_271076	chr3_45615555_+	SINE	Alu	AluJb
CAediting_271077	chr3_45615577_+	SINE	Alu	AluJb
CAediting_271078	chr3_45615579_+	SINE	Alu	AluJb
CAediting_271079	chr3_45615603_+	SINE	Alu	AluJb
CAediting_271080	chr3_45615606_+	SINE	Alu	AluJb
CAediting_271081	chr3_45615609_+	SINE	Alu	AluJb
CAediting_271082	chr3_45615618_+	SINE	Alu	AluJb
CAediting_271083	chr3_45615641_+	SINE	Alu	AluJb
CAediting_271084	chr3_45615645_+	SINE	Alu	AluJb
CAediting_271085	chr3_45615676_+	SINE	Alu	AluJb
CAediting_271086	chr3_45615685_+	SINE	Alu	AluJb
CAediting_271087	chr3_45616818_+	SINE	Alu	AluSg
CAediting_271088	chr3_45619218_+	SINE	Alu	FLAM_C
CAediting_271089	chr3_45620532_+	SINE	Alu	AluSz
CAediting_271090	chr3_45621323_+	SINE	Alu	AluJo
CAediting_271091	chr3_45621330_+	SINE	Alu	AluJo
CAediting_271092	chr3_45621333_+	SINE	Alu	AluJo
CAediting_271094	chr3_45639152_+	SINE	Alu	AluJr
CAediting_271095	chr3_45643260_+	SINE	Alu	AluSz6
CAediting_271096	chr3_45643362_+	SINE	Alu	AluSz6
CAediting_271097	chr3_45643391_+	SINE	Alu	AluSz6
CAediting_271098	chr3_45643397_+	SINE	Alu	AluSz6
CAediting_271099	chr3_45643400_+	SINE	Alu	AluSz6
CAediting_271100	chr3_45643410_+	SINE	Alu	AluSz6
CAediting_271101	chr3_45643426_+	SINE	Alu	AluSz6
CAediting_271102	chr3_45643434_+	SINE	Alu	AluSz6
CAediting_271103	chr3_45645995_+	SINE	Alu	AluJb
CAediting_271104	chr3_45646010_+	SINE	Alu	AluJb
CAediting_271105	chr3_45646012_+	SINE	Alu	AluJb
CAediting_271106	chr3_45646018_+	SINE	Alu	AluJb
CAediting_271107	chr3_45646031_+	SINE	Alu	AluJb
CAediting_271108	chr3_45646033_+	SINE	Alu	AluJb
CAediting_271109	chr3_45646037_+	SINE	Alu	AluJb
CAediting_271110	chr3_45646038_+	SINE	Alu	AluJb
CAediting_271111	chr3_45646039_+	SINE	Alu	AluJb
CAediting_271112	chr3_45646041_+	SINE	Alu	AluJb
CAediting_271113	chr3_45646042_+	SINE	Alu	AluJb
CAediting_271114	chr3_45646043_+	SINE	Alu	AluJb
CAediting_271117	chr3_45646639_+	DNA	hAT-Charlie	MER3
CAediting_271118	chr3_45646652_+	DNA	hAT-Charlie	MER3
CAediting_271121	chr3_45646787_+	SINE	Alu	AluJb
CAediting_271122	chr3_45651815_+	SINE	Alu	AluSx
CAediting_271123	chr3_45653654_+	SINE	Alu	AluSx
CAediting_271124	chr3_45653655_+	SINE	Alu	AluSx
CAediting_271125	chr3_45653671_+	SINE	Alu	AluSx
CAediting_271126	chr3_45653681_+	SINE	Alu	AluSx
CAediting_271127	chr3_45653690_+	SINE	Alu	AluSx
CAediting_271128	chr3_45653700_+	SINE	Alu	AluSx
CAediting_271129	chr3_45653704_+	SINE	Alu	AluSx
CAediting_271130	chr3_45653709_+	SINE	Alu	AluSx
CAediting_271131	chr3_45653724_+	SINE	Alu	AluSx
CAediting_271132	chr3_45653734_+	SINE	Alu	AluSx
CAediting_271133	chr3_45653739_+	SINE	Alu	AluSx
CAediting_271134	chr3_45653745_+	SINE	Alu	AluSx
CAediting_271135	chr3_45653749_+	SINE	Alu	AluSx
CAediting_271136	chr3_45653751_+	SINE	Alu	AluSx
CAediting_271137	chr3_45653754_+	SINE	Alu	AluSx
CAediting_271138	chr3_45653757_+	SINE	Alu	AluSx
CAediting_271139	chr3_45653759_+	SINE	Alu	AluSx
CAediting_271140	chr3_45653781_+	SINE	Alu	AluSx
CAediting_271141	chr3_45653789_+	SINE	Alu	AluSx
CAediting_271142	chr3_45653795_+	SINE	Alu	AluSx
CAediting_271143	chr3_45653799_+	SINE	Alu	AluSx
CAediting_271144	chr3_45653803_+	SINE	Alu	AluSx
CAediting_271145	chr3_45653806_+	SINE	Alu	AluSx
CAediting_271146	chr3_45653812_+	SINE	Alu	AluSx
CAediting_271147	chr3_45653819_+	SINE	Alu	AluSx
CAediting_271148	chr3_45653835_+	SINE	Alu	AluSx
CAediting_271149	chr3_45653838_+	SINE	Alu	AluSx
CAediting_271150	chr3_45653855_+	SINE	Alu	AluSx
CAediting_271151	chr3_45653859_+	SINE	Alu	AluSx
CAediting_271152	chr3_45653860_+	SINE	Alu	AluSx
CAediting_271153	chr3_45653862_+	SINE	Alu	AluSx
CAediting_271154	chr3_45653867_+	SINE	Alu	AluSx
CAediting_271155	chr3_45653870_+	SINE	Alu	AluSx
CAediting_271156	chr3_45653897_+	SINE	Alu	AluSx
CAediting_271157	chr3_45654567_+	SINE	Alu	AluJb
CAediting_271158	chr3_45654573_+	SINE	Alu	AluJb
CAediting_271159	chr3_45654574_+	SINE	Alu	AluJb
CAediting_271160	chr3_45654600_+	SINE	Alu	AluJb
CAediting_271161	chr3_45654608_+	SINE	Alu	AluJb
CAediting_271162	chr3_45654643_+	SINE	Alu	AluJb
CAediting_271163	chr3_45654651_+	SINE	Alu	AluJb
CAediting_271164	chr3_45654653_+	SINE	Alu	AluJb
CAediting_271165	chr3_45654667_+	SINE	Alu	AluJb
CAediting_271166	chr3_45654687_+	SINE	Alu	AluJb
CAediting_271167	chr3_45654703_+	SINE	Alu	AluJb
CAediting_271168	chr3_45654719_+	SINE	Alu	AluJb
CAediting_271169	chr3_45654723_+	SINE	Alu	AluJb
CAediting_271170	chr3_45654728_+	SINE	Alu	AluJb
CAediting_271171	chr3_45654734_+	SINE	Alu	AluJb
CAediting_271172	chr3_45654757_+	SINE	Alu	AluJb
CAediting_271173	chr3_45655130_+	SINE	Alu	AluSz
CAediting_271174	chr3_45655155_+	SINE	Alu	AluSz
CAediting_271175	chr3_45656647_+	SINE	Alu	AluSc5
CAediting_271176	chr3_45657406_+	SINE	Alu	AluJr
CAediting_271177	chr3_45657412_+	SINE	Alu	AluJr
CAediting_271178	chr3_45657428_+	SINE	Alu	AluJr
CAediting_271179	chr3_45657445_+	SINE	Alu	AluJr
CAediting_271180	chr3_45657450_+	SINE	Alu	AluJr
CAediting_271181	chr3_45657466_+	SINE	Alu	AluJr
CAediting_271182	chr3_45657470_+	SINE	Alu	AluJr
CAediting_271183	chr3_45657504_+	SINE	Alu	AluJr
CAediting_271184	chr3_45657512_+	SINE	Alu	AluJr
CAediting_271185	chr3_45657513_+	SINE	Alu	AluJr
CAediting_271186	chr3_45659333_+	SINE	Alu	AluJb
CAediting_271187	chr3_45659366_+	SINE	Alu	AluJb
CAediting_271188	chr3_45659376_+	SINE	Alu	AluJb
CAediting_271189	chr3_45659403_+	SINE	Alu	AluJb
CAediting_271190	chr3_45660549_+	SINE	Alu	AluSz
CAediting_271191	chr3_45660596_+	SINE	Alu	AluSz
CAediting_271192	chr3_45661782_+	SINE	Alu	AluJo
CAediting_271193	chr3_45668591_+	SINE	Alu	AluSx4
CAediting_271194	chr3_45668659_+	SINE	Alu	AluSx4
CAediting_271195	chr3_45675261_+	SINE	Alu	AluSz
CAediting_271196	chr3_45675320_+	SINE	Alu	AluSz
CAediting_271197	chr3_45675329_+	SINE	Alu	AluSz
CAediting_271198	chr3_45675359_+	SINE	Alu	AluSz
CAediting_271199	chr3_45675368_+	SINE	Alu	AluSz
CAediting_271200	chr3_45675374_+	SINE	Alu	AluSz
CAediting_271201	chr3_45675760_+	SINE	Alu	AluJo
CAediting_271202	chr3_45675842_+	SINE	Alu	AluJo
CAediting_271203	chr3_45675903_+	SINE	Alu	AluJo
CAediting_271204	chr3_45675998_+	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for LIMD1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000144791.8.LIMD1.

Correlation between RNA A-to-I editing and PSI for ENSG00000144791.8.LIMD1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LIMD1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for LIMD1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LIMD1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LIMD1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000273317.4	protein_coding
ENST00000440097.4	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_271055	ENST00000273317.4	chr3_45595040_+	-4041.00	-4038.20	-4041.00
CAediting_271055	ENST00000440097.4	chr3_45595040_+	-1103.40	-1099.70	-1103.40

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Relation with ADAR for LIMD1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for LIMD1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for LIMD1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for LIMD1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LIMD1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene