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Editing gene: TMEM116 (CAeditome ID:89894)

Gene summary for TMEM116

Gene summary

Gene information	Gene symbol	TMEM116
	Gene ID	89894
	Gene name	transmembrane protein 116
	Synonyms	-
	Cytomap	12q24.12-q24.13
	Type of gene	protein-coding
	Description	transmembrane protein 116
	Modification date	20210518
	UniProtAcc	Q8NCL8
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for TMEM116

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000198270.11

RNA A-to-I editing events in Cancer.

CAediting_928096(111932978, -), CAediting_928097(111932996, -), CAediting_928098(111933011, -), CAediting_928099(111933117, -), CAediting_928100(111933181, -), CAediting_928101(111933549, -), CAediting_928102(111933556, -), CAediting_928103(111933557, -), CAediting_928104(111933561, -), CAediting_928105(111933565, -), CAediting_928106(111933621, -), CAediting_928107(111933627, -), CAediting_928108(111933629, -), CAediting_928109(111933697, -), CAediting_928110(111933769, -), CAediting_928111(111933775, -), CAediting_928112(111933785, -), CAediting_928113(111933787, -), CAediting_928114(111934517, -), CAediting_928115(111934518, -), CAediting_928116(111934527, -), CAediting_928117(111934576, -), CAediting_928118(111934579, -), CAediting_928119(111934586, -), CAediting_928120(111934592, -), CAediting_928121(111934595, -), CAediting_928122(111934609, -), CAediting_928123(111934610, -), CAediting_928124(111934623, -), CAediting_928125(111934630, -), CAediting_928126(111934634, -), CAediting_928127(111934635, -), CAediting_928128(111934671, -), CAediting_928129(111934672, -), CAediting_928130(111934682, -), CAediting_928131(111934696, -), CAediting_928132(111934701, -), CAediting_928133(111934706, -), CAediting_928134(111934731, -), CAediting_928135(111934753, -), CAediting_928136(111934755, -), CAediting_928137(111935200, -), CAediting_928138(111935233, -), CAediting_928139(111935259, -), CAediting_928140(111935271, -), CAediting_928141(111935296, -), CAediting_928142(111935369, -), CAediting_928143(111935714, -), CAediting_928144(111935719, -), CAediting_928145(111935730, -), CAediting_928146(111935733, -), CAediting_928147(111935737, -), CAediting_928148(111935738, -), CAediting_928149(111935746, -), CAediting_928150(111935749, -), CAediting_928151(111935769, -), CAediting_928152(111935779, -), CAediting_928153(111935801, -), CAediting_928154(111935805, -), CAediting_928155(111935808, -), CAediting_928156(111935809, -), CAediting_928157(111935810, -), CAediting_928158(111935811, -), CAediting_928159(111935814, -), CAediting_928160(111935816, -), CAediting_928161(111935817, -), CAediting_928162(111935818, -), CAediting_928163(111935819, -), CAediting_928164(111935820, -), CAediting_928165(111935836, -), CAediting_928166(111935842, -), CAediting_928167(111935845, -), CAediting_928168(111935858, -), CAediting_928169(111935864, -), CAediting_928170(111935868, -), CAediting_928171(111935873, -), CAediting_928172(111935891, -), CAediting_928173(111935892, -), CAediting_928174(111935897, -), CAediting_928175(111935899, -), CAediting_928176(111935908, -), CAediting_928177(111935913, -), CAediting_928178(111935920, -), CAediting_928179(111935929, -), CAediting_928180(111939787, -), CAediting_928181(111939821, -), CAediting_928182(111944490, -), CAediting_928183(111944493, -), CAediting_928184(111945018, -), CAediting_928185(111964359, -), CAediting_928186(111964380, -), CAediting_928187(111964766, -), CAediting_928188(111965650, -), CAediting_928189(111965680, -), CAediting_928190(111965706, -), CAediting_928191(111969613, -), CAediting_928192(111970163, -), CAediting_928193(111970235, -), CAediting_928194(111971959, -), CAediting_928195(111975216, -), CAediting_928196(111975223, -), CAediting_928197(111975243, -), CAediting_928198(111976105, -), CAediting_928199(111976120, -), CAediting_928200(111980946, -), CAediting_928201(111982517, -), CAediting_928202(111985766, -), CAediting_928203(111985864, -), CAediting_928204(111986138, -), CAediting_928205(111986357, -), CAediting_928206(111986592, -), CAediting_928207(111986613, -), CAediting_928208(111986616, -), CAediting_928209(111986727, -), CAediting_928210(111986787, -), CAediting_928211(111986805, -), CAediting_928212(111986807, -), CAediting_928213(111986812, -), CAediting_928214(111986816, -), CAediting_928215(111987342, -), CAediting_928216(111990066, -), CAediting_928217(111990133, -), CAediting_928218(111997478, -), CAediting_928219(111997485, -), CAediting_928220(111997491, -), CAediting_928221(111997492, -), CAediting_928222(111997493, -), CAediting_928223(111997509, -), CAediting_928224(111997519, -), CAediting_928225(111999547, -), CAediting_928226(112000561, -), CAediting_928227(112000595, -), CAediting_928228(112000599, -), CAediting_928229(112000600, -), CAediting_928230(112000615, -), CAediting_928231(112000658, -), CAediting_928232(112001398, -), CAediting_928233(112001411, -), CAediting_928234(112001436, -), CAediting_928235(112001452, -), CAediting_928236(112001460, -), CAediting_928237(112002330, -), CAediting_928238(112003379, -), CAediting_928239(112012329, -), CAediting_928240(112012410, -),

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RNA editing positional annotations for TMEM116 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_928096	chr12_111932978_-	ncRNA_intronic
CAediting_928097	chr12_111932996_-	ncRNA_intronic
CAediting_928098	chr12_111933011_-	ncRNA_intronic
CAediting_928099	chr12_111933117_-	ncRNA_intronic
CAediting_928100	chr12_111933181_-	ncRNA_intronic
CAediting_928101	chr12_111933549_-	ncRNA_intronic
CAediting_928102	chr12_111933556_-	ncRNA_intronic
CAediting_928103	chr12_111933557_-	ncRNA_intronic
CAediting_928104	chr12_111933561_-	ncRNA_intronic
CAediting_928105	chr12_111933565_-	ncRNA_intronic
CAediting_928106	chr12_111933621_-	ncRNA_intronic
CAediting_928107	chr12_111933627_-	ncRNA_intronic
CAediting_928108	chr12_111933629_-	ncRNA_intronic
CAediting_928109	chr12_111933697_-	ncRNA_intronic
CAediting_928110	chr12_111933769_-	ncRNA_intronic
CAediting_928111	chr12_111933775_-	ncRNA_intronic
CAediting_928112	chr12_111933785_-	ncRNA_intronic
CAediting_928113	chr12_111933787_-	ncRNA_intronic
CAediting_928114	chr12_111934517_-	ncRNA_exonic
CAediting_928115	chr12_111934518_-	ncRNA_exonic
CAediting_928116	chr12_111934527_-	ncRNA_exonic
CAediting_928117	chr12_111934576_-	ncRNA_exonic
CAediting_928118	chr12_111934579_-	ncRNA_exonic
CAediting_928119	chr12_111934586_-	ncRNA_exonic
CAediting_928120	chr12_111934592_-	ncRNA_exonic
CAediting_928121	chr12_111934595_-	ncRNA_exonic
CAediting_928122	chr12_111934609_-	ncRNA_exonic
CAediting_928123	chr12_111934610_-	ncRNA_exonic
CAediting_928124	chr12_111934623_-	ncRNA_exonic
CAediting_928125	chr12_111934630_-	ncRNA_exonic
CAediting_928126	chr12_111934634_-	ncRNA_exonic
CAediting_928127	chr12_111934635_-	ncRNA_exonic
CAediting_928128	chr12_111934671_-	ncRNA_exonic
CAediting_928129	chr12_111934672_-	ncRNA_exonic
CAediting_928130	chr12_111934682_-	ncRNA_exonic
CAediting_928131	chr12_111934696_-	ncRNA_exonic
CAediting_928132	chr12_111934701_-	ncRNA_exonic
CAediting_928133	chr12_111934706_-	ncRNA_exonic
CAediting_928134	chr12_111934731_-	ncRNA_exonic
CAediting_928135	chr12_111934753_-	ncRNA_exonic
CAediting_928136	chr12_111934755_-	ncRNA_exonic
CAediting_928137	chr12_111935200_-	ncRNA_exonic
CAediting_928138	chr12_111935233_-	ncRNA_exonic
CAediting_928139	chr12_111935259_-	ncRNA_exonic
CAediting_928140	chr12_111935271_-	ncRNA_exonic
CAediting_928141	chr12_111935296_-	ncRNA_exonic
CAediting_928142	chr12_111935369_-	ncRNA_exonic
CAediting_928143	chr12_111935714_-	ncRNA_exonic
CAediting_928144	chr12_111935719_-	ncRNA_exonic
CAediting_928145	chr12_111935730_-	ncRNA_exonic
CAediting_928146	chr12_111935733_-	ncRNA_exonic
CAediting_928147	chr12_111935737_-	ncRNA_exonic
CAediting_928148	chr12_111935738_-	ncRNA_exonic
CAediting_928149	chr12_111935746_-	ncRNA_exonic
CAediting_928150	chr12_111935749_-	ncRNA_exonic
CAediting_928151	chr12_111935769_-	ncRNA_exonic
CAediting_928152	chr12_111935779_-	ncRNA_exonic
CAediting_928153	chr12_111935801_-	ncRNA_exonic
CAediting_928154	chr12_111935805_-	ncRNA_exonic
CAediting_928155	chr12_111935808_-	ncRNA_exonic
CAediting_928156	chr12_111935809_-	ncRNA_exonic
CAediting_928157	chr12_111935810_-	ncRNA_exonic
CAediting_928158	chr12_111935811_-	ncRNA_exonic
CAediting_928159	chr12_111935814_-	ncRNA_exonic
CAediting_928160	chr12_111935816_-	ncRNA_exonic
CAediting_928161	chr12_111935817_-	ncRNA_exonic
CAediting_928162	chr12_111935818_-	ncRNA_exonic
CAediting_928163	chr12_111935819_-	ncRNA_exonic
CAediting_928164	chr12_111935820_-	ncRNA_exonic
CAediting_928165	chr12_111935836_-	ncRNA_exonic
CAediting_928166	chr12_111935842_-	ncRNA_exonic
CAediting_928167	chr12_111935845_-	ncRNA_exonic
CAediting_928168	chr12_111935858_-	ncRNA_exonic
CAediting_928169	chr12_111935864_-	ncRNA_exonic
CAediting_928170	chr12_111935868_-	ncRNA_exonic
CAediting_928171	chr12_111935873_-	ncRNA_exonic
CAediting_928172	chr12_111935891_-	ncRNA_exonic
CAediting_928173	chr12_111935892_-	ncRNA_exonic
CAediting_928174	chr12_111935897_-	ncRNA_exonic
CAediting_928175	chr12_111935899_-	ncRNA_exonic
CAediting_928176	chr12_111935908_-	ncRNA_exonic
CAediting_928177	chr12_111935913_-	ncRNA_exonic
CAediting_928178	chr12_111935920_-	ncRNA_exonic
CAediting_928179	chr12_111935929_-	ncRNA_exonic
CAediting_928180	chr12_111939787_-	ncRNA_intronic
CAediting_928181	chr12_111939821_-	ncRNA_intronic
CAediting_928182	chr12_111944490_-	ncRNA_intronic
CAediting_928183	chr12_111944493_-	ncRNA_intronic
CAediting_928184	chr12_111945018_-	ncRNA_intronic
CAediting_928185	chr12_111964359_-	ncRNA_intronic
CAediting_928186	chr12_111964380_-	ncRNA_intronic
CAediting_928187	chr12_111964766_-	ncRNA_intronic
CAediting_928188	chr12_111965650_-	ncRNA_exonic
CAediting_928189	chr12_111965680_-	ncRNA_exonic
CAediting_928190	chr12_111965706_-	ncRNA_exonic
CAediting_928191	chr12_111969613_-	ncRNA_intronic
CAediting_928192	chr12_111970163_-	ncRNA_intronic
CAediting_928193	chr12_111970235_-	ncRNA_intronic
CAediting_928194	chr12_111971959_-	ncRNA_intronic
CAediting_928195	chr12_111975216_-	ncRNA_intronic
CAediting_928196	chr12_111975223_-	ncRNA_intronic
CAediting_928197	chr12_111975243_-	ncRNA_intronic
CAediting_928198	chr12_111976105_-	ncRNA_intronic
CAediting_928199	chr12_111976120_-	ncRNA_intronic
CAediting_928200	chr12_111980946_-	ncRNA_intronic
CAediting_928201	chr12_111982517_-	ncRNA_intronic
CAediting_928202	chr12_111985766_-	ncRNA_intronic
CAediting_928203	chr12_111985864_-	ncRNA_intronic
CAediting_928204	chr12_111986138_-	ncRNA_intronic
CAediting_928205	chr12_111986357_-	ncRNA_intronic
CAediting_928206	chr12_111986592_-	ncRNA_intronic
CAediting_928207	chr12_111986613_-	ncRNA_intronic
CAediting_928208	chr12_111986616_-	ncRNA_intronic
CAediting_928209	chr12_111986727_-	ncRNA_intronic
CAediting_928210	chr12_111986787_-	ncRNA_intronic
CAediting_928211	chr12_111986805_-	ncRNA_intronic
CAediting_928212	chr12_111986807_-	ncRNA_intronic
CAediting_928213	chr12_111986812_-	ncRNA_intronic
CAediting_928214	chr12_111986816_-	ncRNA_intronic
CAediting_928215	chr12_111987342_-	ncRNA_intronic
CAediting_928216	chr12_111990066_-	ncRNA_intronic
CAediting_928217	chr12_111990133_-	ncRNA_intronic
CAediting_928218	chr12_111997478_-	ncRNA_intronic
CAediting_928219	chr12_111997485_-	ncRNA_intronic
CAediting_928220	chr12_111997491_-	ncRNA_intronic
CAediting_928221	chr12_111997492_-	ncRNA_intronic
CAediting_928222	chr12_111997493_-	ncRNA_intronic
CAediting_928223	chr12_111997509_-	ncRNA_intronic
CAediting_928224	chr12_111997519_-	ncRNA_intronic
CAediting_928225	chr12_111999547_-	ncRNA_intronic
CAediting_928226	chr12_112000561_-	ncRNA_intronic
CAediting_928227	chr12_112000595_-	ncRNA_intronic
CAediting_928228	chr12_112000599_-	ncRNA_intronic
CAediting_928229	chr12_112000600_-	ncRNA_intronic
CAediting_928230	chr12_112000615_-	ncRNA_intronic
CAediting_928231	chr12_112000658_-	ncRNA_intronic
CAediting_928232	chr12_112001398_-	ncRNA_intronic
CAediting_928233	chr12_112001411_-	ncRNA_intronic
CAediting_928234	chr12_112001436_-	ncRNA_intronic
CAediting_928235	chr12_112001452_-	ncRNA_intronic
CAediting_928236	chr12_112001460_-	ncRNA_intronic
CAediting_928237	chr12_112002330_-	ncRNA_intronic
CAediting_928238	chr12_112003379_-	ncRNA_intronic
CAediting_928239	chr12_112012329_-	ncRNA_exonic
CAediting_928240	chr12_112012410_-	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_928096	chr12_111932978_-	SINE	Alu	AluSx
CAediting_928097	chr12_111932996_-	SINE	Alu	AluSx
CAediting_928098	chr12_111933011_-	SINE	Alu	AluSx
CAediting_928099	chr12_111933117_-	SINE	Alu	AluSx
CAediting_928100	chr12_111933181_-	SINE	Alu	AluSx
CAediting_928101	chr12_111933549_-	SINE	Alu	AluY
CAediting_928102	chr12_111933556_-	SINE	Alu	AluY
CAediting_928103	chr12_111933557_-	SINE	Alu	AluY
CAediting_928104	chr12_111933561_-	SINE	Alu	AluY
CAediting_928105	chr12_111933565_-	SINE	Alu	AluY
CAediting_928106	chr12_111933621_-	SINE	Alu	AluY
CAediting_928107	chr12_111933627_-	SINE	Alu	AluY
CAediting_928108	chr12_111933629_-	SINE	Alu	AluY
CAediting_928109	chr12_111933697_-	SINE	Alu	AluY
CAediting_928110	chr12_111933769_-	SINE	Alu	AluY
CAediting_928111	chr12_111933775_-	SINE	Alu	AluY
CAediting_928112	chr12_111933785_-	SINE	Alu	AluY
CAediting_928113	chr12_111933787_-	SINE	Alu	AluY
CAediting_928114	chr12_111934517_-	SINE	Alu	AluSg
CAediting_928115	chr12_111934518_-	SINE	Alu	AluSg
CAediting_928116	chr12_111934527_-	SINE	Alu	AluSg
CAediting_928117	chr12_111934576_-	SINE	Alu	AluSg
CAediting_928118	chr12_111934579_-	SINE	Alu	AluSg
CAediting_928119	chr12_111934586_-	SINE	Alu	AluSg
CAediting_928120	chr12_111934592_-	SINE	Alu	AluSg
CAediting_928121	chr12_111934595_-	SINE	Alu	AluSg
CAediting_928122	chr12_111934609_-	SINE	Alu	AluSg
CAediting_928123	chr12_111934610_-	SINE	Alu	AluSg
CAediting_928124	chr12_111934623_-	SINE	Alu	AluSg
CAediting_928125	chr12_111934630_-	SINE	Alu	AluSg
CAediting_928126	chr12_111934634_-	SINE	Alu	AluSg
CAediting_928127	chr12_111934635_-	SINE	Alu	AluSg
CAediting_928128	chr12_111934671_-	SINE	Alu	AluSg
CAediting_928129	chr12_111934672_-	SINE	Alu	AluSg
CAediting_928130	chr12_111934682_-	SINE	Alu	AluSg
CAediting_928131	chr12_111934696_-	SINE	Alu	AluSg
CAediting_928132	chr12_111934701_-	SINE	Alu	AluSg
CAediting_928133	chr12_111934706_-	SINE	Alu	AluSg
CAediting_928134	chr12_111934731_-	SINE	Alu	AluSg
CAediting_928135	chr12_111934753_-	SINE	Alu	AluSg
CAediting_928136	chr12_111934755_-	SINE	Alu	AluSg
CAediting_928137	chr12_111935200_-	SINE	Alu	AluSx
CAediting_928138	chr12_111935233_-	SINE	Alu	AluSx
CAediting_928139	chr12_111935259_-	SINE	Alu	AluSx
CAediting_928140	chr12_111935271_-	SINE	Alu	AluSx
CAediting_928141	chr12_111935296_-	SINE	Alu	AluSx
CAediting_928142	chr12_111935369_-	SINE	Alu	AluSx
CAediting_928143	chr12_111935714_-	SINE	Alu	AluSz6
CAediting_928144	chr12_111935719_-	SINE	Alu	AluSz6
CAediting_928145	chr12_111935730_-	SINE	Alu	AluSz6
CAediting_928146	chr12_111935733_-	SINE	Alu	AluSz6
CAediting_928147	chr12_111935737_-	SINE	Alu	AluSz6
CAediting_928148	chr12_111935738_-	SINE	Alu	AluSz6
CAediting_928149	chr12_111935746_-	SINE	Alu	AluSz6
CAediting_928150	chr12_111935749_-	SINE	Alu	AluSz6
CAediting_928151	chr12_111935769_-	SINE	Alu	AluSz6
CAediting_928152	chr12_111935779_-	SINE	Alu	AluSz6
CAediting_928153	chr12_111935801_-	SINE	Alu	AluSz6
CAediting_928154	chr12_111935805_-	SINE	Alu	AluSz6
CAediting_928155	chr12_111935808_-	SINE	Alu	AluSz6
CAediting_928156	chr12_111935809_-	SINE	Alu	AluSz6
CAediting_928157	chr12_111935810_-	SINE	Alu	AluSz6
CAediting_928158	chr12_111935811_-	SINE	Alu	AluSz6
CAediting_928159	chr12_111935814_-	SINE	Alu	AluSz6
CAediting_928160	chr12_111935816_-	SINE	Alu	AluSz6
CAediting_928161	chr12_111935817_-	SINE	Alu	AluSz6
CAediting_928162	chr12_111935818_-	SINE	Alu	AluSz6
CAediting_928163	chr12_111935819_-	SINE	Alu	AluSz6
CAediting_928164	chr12_111935820_-	SINE	Alu	AluSz6
CAediting_928165	chr12_111935836_-	SINE	Alu	AluSz6
CAediting_928166	chr12_111935842_-	SINE	Alu	AluSz6
CAediting_928167	chr12_111935845_-	SINE	Alu	AluSz6
CAediting_928168	chr12_111935858_-	SINE	Alu	AluSz6
CAediting_928169	chr12_111935864_-	SINE	Alu	AluSz6
CAediting_928170	chr12_111935868_-	SINE	Alu	AluSz6
CAediting_928171	chr12_111935873_-	SINE	Alu	AluSz6
CAediting_928172	chr12_111935891_-	SINE	Alu	AluSz6
CAediting_928173	chr12_111935892_-	SINE	Alu	AluSz6
CAediting_928174	chr12_111935897_-	SINE	Alu	AluSz6
CAediting_928175	chr12_111935899_-	SINE	Alu	AluSz6
CAediting_928176	chr12_111935908_-	SINE	Alu	AluSz6
CAediting_928177	chr12_111935913_-	SINE	Alu	AluSz6
CAediting_928178	chr12_111935920_-	SINE	Alu	AluSz6
CAediting_928179	chr12_111935929_-	SINE	Alu	AluSz6
CAediting_928180	chr12_111939787_-	SINE	Alu	AluJo
CAediting_928181	chr12_111939821_-	SINE	Alu	AluJo
CAediting_928182	chr12_111944490_-	SINE	Alu	AluSc
CAediting_928183	chr12_111944493_-	SINE	Alu	AluSc
CAediting_928184	chr12_111945018_-	SINE	Alu	AluSx
CAediting_928185	chr12_111964359_-	SINE	Alu	AluSc
CAediting_928186	chr12_111964380_-	SINE	Alu	AluSc
CAediting_928187	chr12_111964766_-	SINE	Alu	AluJr
CAediting_928188	chr12_111965650_-	SINE	Alu	AluSz
CAediting_928189	chr12_111965680_-	SINE	Alu	AluSz
CAediting_928190	chr12_111965706_-	SINE	Alu	AluSz
CAediting_928191	chr12_111969613_-	SINE	Alu	AluYk4
CAediting_928192	chr12_111970163_-	SINE	Alu	AluSx1
CAediting_928193	chr12_111970235_-	SINE	Alu	AluSx1
CAediting_928194	chr12_111971959_-	SINE	Alu	AluJr4
CAediting_928195	chr12_111975216_-	SINE	Alu	AluJr
CAediting_928196	chr12_111975223_-	SINE	Alu	AluJr
CAediting_928197	chr12_111975243_-	SINE	Alu	AluJr
CAediting_928198	chr12_111976105_-	SINE	Alu	AluSg
CAediting_928199	chr12_111976120_-	SINE	Alu	AluSg
CAediting_928200	chr12_111980946_-	SINE	Alu	AluJb
CAediting_928201	chr12_111982517_-	SINE	Alu	AluSx3
CAediting_928202	chr12_111985766_-	SINE	Alu	AluJo
CAediting_928203	chr12_111985864_-	SINE	Alu	AluJo
CAediting_928204	chr12_111986138_-	SINE	Alu	AluJb
CAediting_928205	chr12_111986357_-	SINE	Alu	AluJb
CAediting_928206	chr12_111986592_-	SINE	Alu	AluJo
CAediting_928207	chr12_111986613_-	SINE	Alu	AluJo
CAediting_928208	chr12_111986616_-	SINE	Alu	AluJo
CAediting_928209	chr12_111986727_-	SINE	Alu	AluJo
CAediting_928210	chr12_111986787_-	SINE	Alu	AluJo
CAediting_928211	chr12_111986805_-	SINE	Alu	AluJo
CAediting_928212	chr12_111986807_-	SINE	Alu	AluJo
CAediting_928213	chr12_111986812_-	SINE	Alu	AluJo
CAediting_928214	chr12_111986816_-	SINE	Alu	AluJo
CAediting_928215	chr12_111987342_-	SINE	Alu	AluSz
CAediting_928216	chr12_111990066_-	SINE	Alu	AluY
CAediting_928217	chr12_111990133_-	SINE	Alu	AluY
CAediting_928218	chr12_111997478_-	SINE	Alu	AluJr
CAediting_928219	chr12_111997485_-	SINE	Alu	AluJr
CAediting_928220	chr12_111997491_-	SINE	Alu	AluJr
CAediting_928221	chr12_111997492_-	SINE	Alu	AluJr
CAediting_928222	chr12_111997493_-	SINE	Alu	AluJr
CAediting_928223	chr12_111997509_-	SINE	Alu	AluJr
CAediting_928224	chr12_111997519_-	SINE	Alu	AluJr
CAediting_928225	chr12_111999547_-	SINE	Alu	AluSg
CAediting_928226	chr12_112000561_-	SINE	Alu	AluJb
CAediting_928227	chr12_112000595_-	SINE	Alu	AluJb
CAediting_928228	chr12_112000599_-	SINE	Alu	AluJb
CAediting_928229	chr12_112000600_-	SINE	Alu	AluJb
CAediting_928230	chr12_112000615_-	SINE	Alu	AluJb
CAediting_928231	chr12_112000658_-	SINE	Alu	AluJb
CAediting_928232	chr12_112001398_-	SINE	Alu	FRAM
CAediting_928233	chr12_112001411_-	SINE	Alu	FRAM
CAediting_928234	chr12_112001436_-	SINE	Alu	FRAM
CAediting_928235	chr12_112001452_-	SINE	Alu	FRAM
CAediting_928236	chr12_112001460_-	SINE	Alu	FRAM
CAediting_928237	chr12_112002330_-	SINE	Alu	AluSg4
CAediting_928238	chr12_112003379_-	SINE	Alu	AluY
CAediting_928239	chr12_112012329_-	SINE	Alu	AluSx
CAediting_928240	chr12_112012410_-	SINE	Alu	AluSx

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RNA A-to-I editing events in the alternative splicing sites for TMEM116

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_928130	chr12_111934682_-	111934674:111934682	5SS	3+0i	AGGTTCAAG	-12.66	GGGTTCAAG	-15.39
IR	CAediting_928130	chr12_111934682_-	111934674:111934682	5SS	3+0i	AGGTTCAAG	-12.66	GGGTTCAAG	-15.39
ES	CAediting_928134	chr12_111934731_-	111934727:111934749	3SS	0+2i	TGTCTCGGTCTGTTGCCCAGGCT	5.51	TGTCTCGGTCTGTTGCCCGGGCT	-2.44
IR	CAediting_928134	chr12_111934731_-	111934727:111934749	3SS	0+2i	TGTCTCGGTCTGTTGCCCAGGCT	5.51	TGTCTCGGTCTGTTGCCCGGGCT	-2.44
ES	CAediting_928135	chr12_111934753_-	111934751:111934773	3SS	1+0i	CTTTCTTTTTTTTTTTTGAGACG	4.19	CTTTCTTTTTTTTTTTTGAGGCG	5.74
IR	CAediting_928135	chr12_111934753_-	111934751:111934773	3SS	1+0i	CTTTCTTTTTTTTTTTTGAGACG	4.19	CTTTCTTTTTTTTTTTTGAGGCG	5.74
ES	CAediting_928136	chr12_111934755_-	111934751:111934773	3SS	0+2i	CTTTCTTTTTTTTTTTTGAGACG	4.19	CTTTCTTTTTTTTTTTTGGGACG	-3.76
IR	CAediting_928136	chr12_111934755_-	111934751:111934773	3SS	0+2i	CTTTCTTTTTTTTTTTTGAGACG	4.19	CTTTCTTTTTTTTTTTTGGGACG	-3.76

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000198270.11.TMEM116.

Correlation between RNA A-to-I editing and PSI for ENSG00000198270.11.TMEM116.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TMEM116

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

LUSC.CAediting_928135.ENSG00000198270.TMEM116.png
Soverview

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Protein coding region RNA A-to-I editings for TMEM116

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TMEM116

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_928189	chr12_111965680_-	ENSG00000198270.11	ENST00000547878	hsa-miR-3189-3p	111965679	111965685	7mer-m8	111965678	111965700	146.00	-19.03
CAediting_928189	chr12_111965680_-	ENSG00000198270.11	ENST00000547878	hsa-miR-6813-3p	111965678	111965684	7mer-m8	111965677	111965697	140.00	-16.26
CAediting_928189	chr12_111965680_-	ENSG00000198270.11	ENST00000546537	hsa-miR-3189-3p	111965679	111965685	7mer-m8	111965678	111965700	146.00	-19.03
CAediting_928189	chr12_111965680_-	ENSG00000198270.11	ENST00000546537	hsa-miR-6813-3p	111965678	111965684	7mer-m8	111965677	111965697	140.00	-16.26
CAediting_928190	chr12_111965706_-	ENSG00000198270.11	ENST00000547878	hsa-miR-3622a-3p	111965702	111965709	8mer-1a	111965702	111965725	145.00	-15.58
CAediting_928190	chr12_111965706_-	ENSG00000198270.11	ENST00000547878	hsa-miR-3622b-3p	111965702	111965709	8mer-1a	111965702	111965722	153.00	-18.76
CAediting_928190	chr12_111965706_-	ENSG00000198270.11	ENST00000547878	hsa-miR-544b	111965705	111965711	7mer-m8	111965704	111965725	170.00	-25.66
CAediting_928190	chr12_111965706_-	ENSG00000198270.11	ENST00000547878	hsa-miR-7162-3p	111965706	111965712	7mer-m8	111965705	111965727	143.00	-18.97

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_928188	chr12_111965650_-	ENSG00000198270.11	ENST00000547878	hsa-miR-764	111965646	111965652	7mer-m8	111965645	111965669	145	-20.41
CAediting_928188	chr12_111965650_-	ENSG00000198270.11	ENST00000546537	hsa-miR-764	111965646	111965652	7mer-m8	111965645	111965669	145	-20.41

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_396018	chr5_1062918_-	ENSG00000198270.11	ENST00000547878	hsa-miR-4635	111965705	111965711	7mer-m8	111965704	111965724	160	-21.58
CAediting_1229415	chr17_67471547_+	ENSG00000198270.11	ENST00000547878	hsa-miR-548aa	111933974	111933980	7mer-m8	111933973	111933995	151	-11.57
CAediting_1399425	chr20_1392958_-	ENSG00000198270.11	ENST00000547878	hsa-miR-6869-5p	111933914	111933920	7mer-m8	111933913	111933934	164	-27.67
CAediting_86358	chr1_109598906_+	ENSG00000198270.11	ENST00000547878	hsa-miR-197-5p	111931656	111931662	7mer-m8	111931655	111931675	145	-22.85

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688080	chr9_63819626_+	ENSG00000198270.11	ENST00000547878	hsa-miR-4477b	111965635	111965642	8mer-1a	111965635	111965659	143	-11.03
CAediting_1399425	chr20_1392958_-	ENSG00000198270.11	ENST00000547878	hsa-miR-6869-5p	111931796	111931803	8mer-1a	111931796	111931817	140	-12.7

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TMEM116

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for TMEM116

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for TMEM116

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for TMEM116

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for TMEM116

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TMEM116

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene