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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: HERC2 (CAeditome ID:8924)

Gene summary for HERC2

check button Gene summary
Gene informationGene symbol

HERC2

Gene ID

8924

Gene nameHECT and RLD domain containing E3 ubiquitin protein ligase 2
SynonymsD15F37S1|MRT38|SHEP1|jdf2|p528
Cytomap

15q13.1

Type of geneprotein-coding
DescriptionE3 ubiquitin-protein ligase HERC2HECT-type E3 ubiquitin transferase HERC2hect domain and RCC1-like domain-containing protein 2hect domain and RLD 2probable E3 ubiquitin-protein ligase HERC2
Modification date20210531
UniProtAcc

O95714

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
HERC2

GO:0032183

E3 ubiquitin-protein ligase HERC2

22508508

HERC2

GO:0061630

E3 ubiquitin-protein ligase HERC2

20304803

HERC2

GO:0006974

E3 ubiquitin-protein ligase HERC2

22508508

HERC2

GO:0016567

E3 ubiquitin-protein ligase HERC2

20304803

HERC2

GO:0005634

E3 ubiquitin-protein ligase HERC2

20304803

HERC2

GO:0005737

E3 ubiquitin-protein ligase HERC2

20304803

HERC2

GO:0005829

E3 ubiquitin-protein ligase HERC2

0000052

HERC2

GO:0005886

E3 ubiquitin-protein ligase HERC2

0000052


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RNA A-to-I events for HERC2

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000128731.14

check button RNA A-to-I editing events in Cancer.
CAediting_1025023(28119033, -), CAediting_1025024(28119278, -), CAediting_1025025(28119314, -), CAediting_1025026(28119551, -), CAediting_1025027(28119627, -), CAediting_1025028(28119633, -), CAediting_1025029(28119672, -), CAediting_1025030(28176470, -), CAediting_1025031(28183245, -), CAediting_1025032(28183272, -), CAediting_1025033(28183281, -), CAediting_1025034(28183472, -), CAediting_1025035(28188830, -), CAediting_1025036(28188956, -), CAediting_1025037(28188964, -), CAediting_1025038(28189005, -), CAediting_1025039(28189036, -), CAediting_1025040(28190105, -), CAediting_1025041(28190137, -), CAediting_1025042(28190141, -), CAediting_1025043(28190153, -), CAediting_1025044(28190253, -), CAediting_1025045(28190256, -), CAediting_1025046(28190292, -), CAediting_1025047(28206925, -), CAediting_1025048(28210064, -), CAediting_1025049(28210272, -), CAediting_1025050(28210304, -), CAediting_1025051(28249758, -), CAediting_1025052(28254207, -), CAediting_1025053(28257940, -), CAediting_1025054(28258350, -), CAediting_1025055(28258453, -), CAediting_1025056(28259129, -), CAediting_1025057(28259376, -), CAediting_1025058(28279103, -), CAediting_1025059(28287791, -), CAediting_1025060(28287796, -), CAediting_1025061(28287844, -), CAediting_1025062(28287852, -), CAediting_1025063(28287862, -), CAediting_1025064(28287896, -), CAediting_1025065(28287899, -), CAediting_1025066(28287903, -), CAediting_1025067(28287904, -), CAediting_1025068(28287905, -), CAediting_1025069(28287942, -), CAediting_1025070(28287953, -), CAediting_1025071(28287991, -), CAediting_1025072(28293250, -), CAediting_1025073(28304397, -), CAediting_1025074(28304398, -), CAediting_1025075(28304457, -), CAediting_1025076(28304465, -), CAediting_1025077(28304470, -), CAediting_1025078(28304479, -), CAediting_1025079(28304496, -), CAediting_1025080(28304532, -), CAediting_1025081(28304535, -), CAediting_1025082(28304536, -), CAediting_1025083(28304538, -), CAediting_1025084(28304539, -), CAediting_1025085(28304541, -), CAediting_1025086(28304543, -), CAediting_1025087(28304544, -), CAediting_1025088(28304545, -), CAediting_1025089(28304546, -), CAediting_1025090(28304547, -), CAediting_1025091(28304569, -), CAediting_1025092(28304571, -), CAediting_1025093(28304572, -), CAediting_1025094(28304609, -), CAediting_1025095(28304637, -), CAediting_1025096(28304643, -), CAediting_1025097(28313342, -), CAediting_1025098(28313384, -), CAediting_1025099(28313385, -), CAediting_1025100(28315638, -), CAediting_1025101(28316422, -), CAediting_1025102(28316438, -), CAediting_1025103(28316472, -), CAediting_1025104(28316849, -), CAediting_1025105(28316869, -), CAediting_1025106(28316925, -), CAediting_1025107(28316970, -), CAediting_1025108(28320142, -), CAediting_1025109(28320143, -), CAediting_1025110(28320144, -), CAediting_1025111(28320162, -), CAediting_1025112(28320211, -), CAediting_1025113(28320226, -), CAediting_1025114(28320243, -), CAediting_1025115(28320247, -), CAediting_1025116(28320252, -), CAediting_1025117(28320253, -), CAediting_1025118(28320307, -), CAediting_1025119(28320317, -), CAediting_1025120(28320386, -),

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RNA editing positional annotations for HERC2 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_1025030chr15_28176470_-nonsynonymous SNVENST00000261609.10c.A9644Gp.Q3215RTDD

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1025023chr15_28119033_-intronic
CAediting_1025024chr15_28119278_-intronic
CAediting_1025025chr15_28119314_-intronic
CAediting_1025026chr15_28119551_-intronic
CAediting_1025027chr15_28119627_-intronic
CAediting_1025028chr15_28119633_-intronic
CAediting_1025029chr15_28119672_-intronic
CAediting_1025030chr15_28176470_-exonic
CAediting_1025031chr15_28183245_-intronic
CAediting_1025032chr15_28183272_-intronic
CAediting_1025033chr15_28183281_-intronic
CAediting_1025034chr15_28183472_-intronic
CAediting_1025035chr15_28188830_-intronic
CAediting_1025036chr15_28188956_-intronic
CAediting_1025037chr15_28188964_-intronic
CAediting_1025038chr15_28189005_-intronic
CAediting_1025039chr15_28189036_-intronic
CAediting_1025040chr15_28190105_-intronic
CAediting_1025041chr15_28190137_-intronic
CAediting_1025042chr15_28190141_-intronic
CAediting_1025043chr15_28190153_-intronic
CAediting_1025044chr15_28190253_-ncRNA_exonic
CAediting_1025045chr15_28190256_-ncRNA_exonic
CAediting_1025046chr15_28190292_-ncRNA_exonic
CAediting_1025047chr15_28206925_-intronic
CAediting_1025048chr15_28210064_-intronic
CAediting_1025049chr15_28210272_-intronic
CAediting_1025050chr15_28210304_-intronic
CAediting_1025051chr15_28249758_-intronic
CAediting_1025052chr15_28254207_-intronic
CAediting_1025053chr15_28257940_-intronic
CAediting_1025054chr15_28258350_-intronic
CAediting_1025055chr15_28258453_-intronic
CAediting_1025056chr15_28259129_-intronic
CAediting_1025057chr15_28259376_-intronic
CAediting_1025058chr15_28279103_-intronic
CAediting_1025059chr15_28287791_-ncRNA_intronic
CAediting_1025060chr15_28287796_-ncRNA_intronic
CAediting_1025061chr15_28287844_-ncRNA_intronic
CAediting_1025062chr15_28287852_-ncRNA_intronic
CAediting_1025063chr15_28287862_-ncRNA_intronic
CAediting_1025064chr15_28287896_-ncRNA_intronic
CAediting_1025065chr15_28287899_-ncRNA_intronic
CAediting_1025066chr15_28287903_-ncRNA_intronic
CAediting_1025067chr15_28287904_-ncRNA_intronic
CAediting_1025068chr15_28287905_-ncRNA_intronic
CAediting_1025069chr15_28287942_-ncRNA_intronic
CAediting_1025070chr15_28287953_-ncRNA_intronic
CAediting_1025071chr15_28287991_-ncRNA_intronic
CAediting_1025072chr15_28293250_-ncRNA_intronic
CAediting_1025073chr15_28304397_-intronic
CAediting_1025074chr15_28304398_-intronic
CAediting_1025075chr15_28304457_-intronic
CAediting_1025076chr15_28304465_-intronic
CAediting_1025077chr15_28304470_-intronic
CAediting_1025078chr15_28304479_-intronic
CAediting_1025079chr15_28304496_-intronic
CAediting_1025080chr15_28304532_-intronic
CAediting_1025081chr15_28304535_-intronic
CAediting_1025082chr15_28304536_-intronic
CAediting_1025083chr15_28304538_-intronic
CAediting_1025084chr15_28304539_-intronic
CAediting_1025085chr15_28304541_-intronic
CAediting_1025086chr15_28304543_-intronic
CAediting_1025087chr15_28304544_-intronic
CAediting_1025088chr15_28304545_-intronic
CAediting_1025089chr15_28304546_-intronic
CAediting_1025090chr15_28304547_-intronic
CAediting_1025091chr15_28304569_-intronic
CAediting_1025092chr15_28304571_-intronic
CAediting_1025093chr15_28304572_-intronic
CAediting_1025094chr15_28304609_-intronic
CAediting_1025095chr15_28304637_-intronic
CAediting_1025096chr15_28304643_-intronic
CAediting_1025097chr15_28313342_-intronic
CAediting_1025098chr15_28313384_-intronic
CAediting_1025099chr15_28313385_-intronic
CAediting_1025100chr15_28315638_-intronic
CAediting_1025101chr15_28316422_-intronic
CAediting_1025102chr15_28316438_-intronic
CAediting_1025103chr15_28316472_-intronic
CAediting_1025104chr15_28316849_-intronic
CAediting_1025105chr15_28316869_-intronic
CAediting_1025106chr15_28316925_-intronic
CAediting_1025107chr15_28316970_-intronic
CAediting_1025108chr15_28320142_-ncRNA_exonic
CAediting_1025109chr15_28320143_-ncRNA_exonic
CAediting_1025110chr15_28320144_-ncRNA_exonic
CAediting_1025111chr15_28320162_-ncRNA_exonic
CAediting_1025112chr15_28320211_-ncRNA_exonic
CAediting_1025113chr15_28320226_-ncRNA_exonic
CAediting_1025114chr15_28320243_-ncRNA_exonic
CAediting_1025115chr15_28320247_-ncRNA_exonic
CAediting_1025116chr15_28320252_-ncRNA_exonic
CAediting_1025117chr15_28320253_-ncRNA_exonic
CAediting_1025118chr15_28320307_-ncRNA_exonic
CAediting_1025119chr15_28320317_-ncRNA_exonic
CAediting_1025120chr15_28320386_-ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1025023chr15_28119033_-SINEAluAluSx
CAediting_1025024chr15_28119278_-SINEAluAluSx
CAediting_1025025chr15_28119314_-SINEAluAluSx
CAediting_1025026chr15_28119551_-SINEAluAluJb
CAediting_1025027chr15_28119627_-SINEAluAluJb
CAediting_1025028chr15_28119633_-SINEAluAluJb
CAediting_1025029chr15_28119672_-SINEAluAluJb
CAediting_1025031chr15_28183245_-SINEAluAluJb
CAediting_1025032chr15_28183272_-SINEAluAluJb
CAediting_1025033chr15_28183281_-SINEAluAluJb
CAediting_1025034chr15_28183472_-SINEAluAluJb
CAediting_1025035chr15_28188830_-SINEAluAluSx1
CAediting_1025036chr15_28188956_-SINEAluAluSx1
CAediting_1025037chr15_28188964_-SINEAluAluSx1
CAediting_1025038chr15_28189005_-SINEAluAluSx1
CAediting_1025039chr15_28189036_-SINEAluAluSx1
CAediting_1025040chr15_28190105_-SINEAluAluY
CAediting_1025041chr15_28190137_-SINEAluAluY
CAediting_1025042chr15_28190141_-SINEAluAluY
CAediting_1025043chr15_28190153_-SINEAluAluY
CAediting_1025044chr15_28190253_-SINEAluAluY
CAediting_1025045chr15_28190256_-SINEAluAluY
CAediting_1025046chr15_28190292_-SINEAluAluY
CAediting_1025047chr15_28206925_-SINEAluAluSc5
CAediting_1025048chr15_28210064_-SINEAluAluSx1
CAediting_1025049chr15_28210272_-SINEAluAluY
CAediting_1025050chr15_28210304_-SINEAluAluY
CAediting_1025051chr15_28249758_-SINEAluAluSc5
CAediting_1025052chr15_28254207_-SINEAluAluSp
CAediting_1025053chr15_28257940_-SINEAluAluY
CAediting_1025054chr15_28258350_-SINEAluAluSp
CAediting_1025055chr15_28258453_-SINEAluAluSp
CAediting_1025056chr15_28259129_-SINEAluAluSq2
CAediting_1025057chr15_28259376_-SINEAluAluSq2
CAediting_1025058chr15_28279103_-SINEAluAluSp
CAediting_1025059chr15_28287791_-SINEAluAluY
CAediting_1025060chr15_28287796_-SINEAluAluY
CAediting_1025061chr15_28287844_-SINEAluAluY
CAediting_1025062chr15_28287852_-SINEAluAluY
CAediting_1025063chr15_28287862_-SINEAluAluY
CAediting_1025064chr15_28287896_-SINEAluAluY
CAediting_1025065chr15_28287899_-SINEAluAluY
CAediting_1025066chr15_28287903_-SINEAluAluY
CAediting_1025067chr15_28287904_-SINEAluAluY
CAediting_1025068chr15_28287905_-SINEAluAluY
CAediting_1025069chr15_28287942_-SINEAluAluY
CAediting_1025070chr15_28287953_-SINEAluAluY
CAediting_1025071chr15_28287991_-SINEAluAluY
CAediting_1025072chr15_28293250_-SINEAluAluY
CAediting_1025073chr15_28304397_-SINEAluAluSx1
CAediting_1025074chr15_28304398_-SINEAluAluSx1
CAediting_1025075chr15_28304457_-SINEAluAluSx1
CAediting_1025076chr15_28304465_-SINEAluAluSx1
CAediting_1025077chr15_28304470_-SINEAluAluSx1
CAediting_1025078chr15_28304479_-SINEAluAluSx1
CAediting_1025079chr15_28304496_-SINEAluAluSx1
CAediting_1025080chr15_28304532_-SINEAluAluSx1
CAediting_1025081chr15_28304535_-SINEAluAluSx1
CAediting_1025082chr15_28304536_-SINEAluAluSx1
CAediting_1025083chr15_28304538_-SINEAluAluSx1
CAediting_1025084chr15_28304539_-SINEAluAluSx1
CAediting_1025085chr15_28304541_-SINEAluAluSx1
CAediting_1025086chr15_28304543_-SINEAluAluSx1
CAediting_1025087chr15_28304544_-SINEAluAluSx1
CAediting_1025088chr15_28304545_-SINEAluAluSx1
CAediting_1025089chr15_28304546_-SINEAluAluSx1
CAediting_1025090chr15_28304547_-SINEAluAluSx1
CAediting_1025091chr15_28304569_-SINEAluAluSx1
CAediting_1025092chr15_28304571_-SINEAluAluSx1
CAediting_1025093chr15_28304572_-SINEAluAluSx1
CAediting_1025094chr15_28304609_-SINEAluAluSx1
CAediting_1025095chr15_28304637_-SINEAluAluSx1
CAediting_1025096chr15_28304643_-SINEAluAluSx1
CAediting_1025097chr15_28313342_-SINEAluAluY
CAediting_1025098chr15_28313384_-SINEAluAluY
CAediting_1025099chr15_28313385_-SINEAluAluY
CAediting_1025100chr15_28315638_-SINEAluAluSx
CAediting_1025101chr15_28316422_-SINEAluAluJo
CAediting_1025102chr15_28316438_-SINEAluAluJo
CAediting_1025103chr15_28316472_-SINEAluAluJo
CAediting_1025104chr15_28316849_-SINEAluAluSc
CAediting_1025105chr15_28316869_-SINEAluAluSc
CAediting_1025106chr15_28316925_-SINEAluAluSc
CAediting_1025107chr15_28316970_-SINEAluAluSc
CAediting_1025108chr15_28320142_-SINEAluAluSq2
CAediting_1025109chr15_28320143_-SINEAluAluSq2
CAediting_1025110chr15_28320144_-SINEAluAluSq2
CAediting_1025111chr15_28320162_-SINEAluAluSq2
CAediting_1025112chr15_28320211_-SINEAluAluSq2
CAediting_1025113chr15_28320226_-SINEAluAluSq2
CAediting_1025114chr15_28320243_-SINEAluAluSq2
CAediting_1025115chr15_28320247_-SINEAluAluSq2
CAediting_1025116chr15_28320252_-SINEAluAluSq2
CAediting_1025117chr15_28320253_-SINEAluAluSq2
CAediting_1025118chr15_28320307_-SINEAluAluSq2
CAediting_1025119chr15_28320317_-SINEAluAluSq2
CAediting_1025120chr15_28320386_-SINEAluAluSq2

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RNA A-to-I editing events in the alternative splicing sites for HERC2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000128731.14.HERC2.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000128731.14.HERC2.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HERC2

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for HERC2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for HERC2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_846604chr11_93733708_-ENSG00000128731.14ENST00000564734hsa-miR-1304-3p28260906282609127mer-m82826090528260924153-23.3
CAediting_393chr1_1167164_+ENSG00000128731.14ENST00000564734hsa-miR-200b-3p28260829282608357mer-m82826082828260848152-18.19
CAediting_1160181chr17_7017644_-ENSG00000128731.14ENST00000564734hsa-miR-195-3p28268577282685837mer-m82826857628268596143-12.71
CAediting_228905chr2_188297554_+ENSG00000128731.14ENST00000564734hsa-miR-561-3p28262933282629397mer-m82826293228262952150-12.07
CAediting_86358chr1_109598906_+ENSG00000128731.14ENST00000564734hsa-miR-197-5p28260934282609418mer-1a2826093428260956157-26.23

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_573001chr7_92204086_-ENSG00000128731.14ENST00000261609hsa-miR-1285-5p28111739281117457mer-m82811173828111761145-18.91

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HERC2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for HERC2

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for HERC2

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for HERC2

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for HERC2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for HERC2

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
HERC2C3809753MENTAL RETARDATION, AUTOSOMAL RECESSIVE 382CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
HERC2C0009324Ulcerative Colitis1CTD_human
HERC2C0264423Asthma, Occupational1CTD_human