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Editing gene: CPNE1 (CAeditome ID:8904)

Gene summary for CPNE1

Gene summary

Gene information	Gene symbol	CPNE1
	Gene ID	8904
	Gene name	copine 1
	Synonyms	COPN1\|CPN1
	Cytomap	20q11.22
	Type of gene	protein-coding
	Description	copine-1chromobindin 17copine I
	Modification date	20210518
	UniProtAcc	Q99829
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
CPNE1	GO:0001786	Copine-1	9430674
CPNE1	GO:0004175	Copine-1	18212740
CPNE1	GO:0043392	Copine-1	18212740
CPNE1	GO:0045666	Copine-1	23263657
CPNE1	GO:0051897	Copine-1	23263657
CPNE1	GO:1990138	Copine-1	23263657
CPNE1	GO:0005634	Copine-1	18212740
CPNE1	GO:0005634	Copine-1	21087455
CPNE1	GO:0005654	Copine-1	0000052
CPNE1	GO:0005737	Copine-1	21087455
CPNE1	GO:0005737	Copine-1	25450385
CPNE1	GO:0005829	Copine-1	12949241
CPNE1	GO:0005829	Copine-1	18212740
CPNE1	GO:0016020	Copine-1	25450385
CPNE1	GO:0031965	Copine-1	0000052

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RNA A-to-I events for CPNE1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000214078.10

RNA A-to-I editing events in Cancer.

CAediting_1420861(35626929, -), CAediting_1420862(35626943, -), CAediting_1420863(35626945, -), CAediting_1420864(35626953, -), CAediting_1420865(35626970, -), CAediting_1420866(35626971, -), CAediting_1420867(35626976, -), CAediting_1420868(35626985, -), CAediting_1420869(35626987, -), CAediting_1420870(35627005, -), CAediting_1420871(35627018, -), CAediting_1420872(35627022, -), CAediting_1420873(35627033, -), CAediting_1420874(35627039, -), CAediting_1420875(35627044, -), CAediting_1420876(35627050, -), CAediting_1420877(35627066, -), CAediting_1420878(35627076, -), CAediting_1420879(35627079, -), CAediting_1420880(35627088, -), CAediting_1420881(35627105, -), CAediting_1420882(35627106, -), CAediting_1420883(35627125, -), CAediting_1420884(35627126, -), CAediting_1420885(35627136, -), CAediting_1420886(35627146, -), CAediting_1420887(35627166, -), CAediting_1420888(35627186, -), CAediting_1420889(35627880, -), CAediting_1420890(35627901, -), CAediting_1420891(35627924, -), CAediting_1420892(35627927, -), CAediting_1420893(35627928, -), CAediting_1420894(35627940, -), CAediting_1420895(35627952, -), CAediting_1420896(35628163, -), CAediting_1420897(35628176, -), CAediting_1420898(35628185, -), CAediting_1420899(35628198, -), CAediting_1420900(35628238, -), CAediting_1420901(35628251, -), CAediting_1420902(35628263, -), CAediting_1420903(35628281, -), CAediting_1420904(35628283, -), CAediting_1420905(35628509, -), CAediting_1420906(35629589, -), CAediting_1420907(35629679, -), CAediting_1420908(35629688, -), CAediting_1420909(35629715, -), CAediting_1420910(35629748, -), CAediting_1420911(35629751, -), CAediting_1420912(35629756, -), CAediting_1420913(35629761, -), CAediting_1420914(35629774, -), CAediting_1420915(35629783, -), CAediting_1420916(35629787, -), CAediting_1420917(35629797, -), CAediting_1420918(35629807, -), CAediting_1420919(35629812, -), CAediting_1420920(35629818, -), CAediting_1420921(35629823, -), CAediting_1420922(35629826, -), CAediting_1420923(35629827, -), CAediting_1420924(35629828, -), CAediting_1420925(35629829, -), CAediting_1420926(35629830, -), CAediting_1420927(35629832, -), CAediting_1420928(35629835, -), CAediting_1420929(35629836, -), CAediting_1420930(35629837, -), CAediting_1420931(35629838, -), CAediting_1420932(35629852, -), CAediting_1420933(35629853, -), CAediting_1420934(35629854, -), CAediting_1420935(35629855, -), CAediting_1420936(35629862, -), CAediting_1420937(35629863, -), CAediting_1420938(35629864, -), CAediting_1420939(35629875, -), CAediting_1420940(35629882, -), CAediting_1420941(35629883, -), CAediting_1420942(35629886, -), CAediting_1420943(35629891, -), CAediting_1420944(35629909, -), CAediting_1420945(35629910, -), CAediting_1420946(35629915, -), CAediting_1420947(35629934, -), CAediting_1420948(35629957, -), CAediting_1420949(35629962, -), CAediting_1420950(35630013, -), CAediting_1420951(35630021, -), CAediting_1420952(35630037, -), CAediting_1420953(35630049, -), CAediting_1420954(35630077, -), CAediting_1420955(35630082, -), CAediting_1420956(35630124, -), CAediting_1420957(35630128, -), CAediting_1420958(35630131, -), CAediting_1420959(35630137, -), CAediting_1420960(35630145, -), CAediting_1420961(35630146, -), CAediting_1420962(35630170, -), CAediting_1420963(35630172, -), CAediting_1420964(35630182, -), CAediting_1420965(35630185, -), CAediting_1420966(35630194, -), CAediting_1420967(35630208, -), CAediting_1420968(35630211, -), CAediting_1420969(35630231, -), CAediting_1420970(35630238, -), CAediting_1420971(35630243, -), CAediting_1420972(35630249, -), CAediting_1420973(35630287, -), CAediting_1420974(35630289, -), CAediting_1420975(35630290, -), CAediting_1420976(35630291, -), CAediting_1420977(35630293, -), CAediting_1420978(35633843, -), CAediting_1420979(35633873, -), CAediting_1420980(35634431, -), CAediting_1420981(35634470, -), CAediting_1420982(35634472, -), CAediting_1420983(35634485, -), CAediting_1420984(35634511, -), CAediting_1420985(35634512, -), CAediting_1420986(35634525, -), CAediting_1420987(35634537, -), CAediting_1420988(35634590, -), CAediting_1420989(35634591, -), CAediting_1420990(35634791, -), CAediting_1420991(35634799, -), CAediting_1420992(35634811, -), CAediting_1420993(35634824, -), CAediting_1420994(35634830, -), CAediting_1420995(35634831, -), CAediting_1420996(35634835, -), CAediting_1420997(35634836, -), CAediting_1420998(35634872, -), CAediting_1420999(35634878, -), CAediting_1421000(35634884, -), CAediting_1421001(35634904, -), CAediting_1421002(35634906, -), CAediting_1421003(35634907, -), CAediting_1421004(35634908, -), CAediting_1421005(35634910, -), CAediting_1421006(35634913, -), CAediting_1421007(35634917, -), CAediting_1421008(35634926, -), CAediting_1421009(35634939, -), CAediting_1421010(35634943, -), CAediting_1421011(35634947, -), CAediting_1421012(35635000, -), CAediting_1421013(35635011, -), CAediting_1421014(35635019, -), CAediting_1421015(35636646, -), CAediting_1421016(35639415, -), CAediting_1421017(35639442, -), CAediting_1421018(35639451, -), CAediting_1421019(35639469, -), CAediting_1421020(35639505, -), CAediting_1421021(35639544, -), CAediting_1421022(35645986, -), CAediting_1421023(35645998, -), CAediting_1421024(35646229, -), CAediting_1421025(35646423, -), CAediting_1421026(35646466, -), CAediting_1421027(35646473, -), CAediting_1421028(35646479, -), CAediting_1421029(35646495, -), CAediting_1421030(35646496, -), CAediting_1421031(35646502, -), CAediting_1421032(35647810, -), CAediting_1421033(35647812, -), CAediting_1421034(35647890, -), CAediting_1421035(35656606, -), CAediting_1421036(35656646, -), CAediting_1421037(35656796, -), CAediting_1421038(35657816, -), CAediting_1421039(35660310, -), CAediting_1421040(35660390, -), CAediting_1421041(35660395, -), CAediting_1421042(35660417, -),

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RNA editing positional annotations for CPNE1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1420861	chr20_35626929_-	ncRNA_intronic
CAediting_1420862	chr20_35626943_-	ncRNA_intronic
CAediting_1420863	chr20_35626945_-	ncRNA_intronic
CAediting_1420864	chr20_35626953_-	ncRNA_intronic
CAediting_1420865	chr20_35626970_-	ncRNA_intronic
CAediting_1420866	chr20_35626971_-	ncRNA_intronic
CAediting_1420867	chr20_35626976_-	ncRNA_intronic
CAediting_1420868	chr20_35626985_-	ncRNA_intronic
CAediting_1420869	chr20_35626987_-	ncRNA_intronic
CAediting_1420870	chr20_35627005_-	ncRNA_intronic
CAediting_1420871	chr20_35627018_-	ncRNA_intronic
CAediting_1420872	chr20_35627022_-	ncRNA_intronic
CAediting_1420873	chr20_35627033_-	ncRNA_intronic
CAediting_1420874	chr20_35627039_-	ncRNA_intronic
CAediting_1420875	chr20_35627044_-	ncRNA_intronic
CAediting_1420876	chr20_35627050_-	ncRNA_intronic
CAediting_1420877	chr20_35627066_-	ncRNA_intronic
CAediting_1420878	chr20_35627076_-	ncRNA_intronic
CAediting_1420879	chr20_35627079_-	ncRNA_intronic
CAediting_1420880	chr20_35627088_-	ncRNA_intronic
CAediting_1420881	chr20_35627105_-	ncRNA_intronic
CAediting_1420882	chr20_35627106_-	ncRNA_intronic
CAediting_1420883	chr20_35627125_-	ncRNA_intronic
CAediting_1420884	chr20_35627126_-	ncRNA_intronic
CAediting_1420885	chr20_35627136_-	ncRNA_intronic
CAediting_1420886	chr20_35627146_-	ncRNA_intronic
CAediting_1420887	chr20_35627166_-	ncRNA_intronic
CAediting_1420888	chr20_35627186_-	ncRNA_intronic
CAediting_1420889	chr20_35627880_-	ncRNA_intronic
CAediting_1420890	chr20_35627901_-	ncRNA_intronic
CAediting_1420891	chr20_35627924_-	ncRNA_intronic
CAediting_1420892	chr20_35627927_-	ncRNA_intronic
CAediting_1420893	chr20_35627928_-	ncRNA_intronic
CAediting_1420894	chr20_35627940_-	ncRNA_intronic
CAediting_1420895	chr20_35627952_-	ncRNA_intronic
CAediting_1420896	chr20_35628163_-	ncRNA_intronic
CAediting_1420897	chr20_35628176_-	ncRNA_intronic
CAediting_1420898	chr20_35628185_-	ncRNA_intronic
CAediting_1420899	chr20_35628198_-	ncRNA_intronic
CAediting_1420900	chr20_35628238_-	ncRNA_intronic
CAediting_1420901	chr20_35628251_-	ncRNA_intronic
CAediting_1420902	chr20_35628263_-	ncRNA_intronic
CAediting_1420903	chr20_35628281_-	ncRNA_intronic
CAediting_1420904	chr20_35628283_-	ncRNA_intronic
CAediting_1420905	chr20_35628509_-	ncRNA_intronic
CAediting_1420906	chr20_35629589_-	ncRNA_intronic
CAediting_1420907	chr20_35629679_-	ncRNA_intronic
CAediting_1420908	chr20_35629688_-	ncRNA_intronic
CAediting_1420909	chr20_35629715_-	ncRNA_intronic
CAediting_1420910	chr20_35629748_-	ncRNA_intronic
CAediting_1420911	chr20_35629751_-	ncRNA_intronic
CAediting_1420912	chr20_35629756_-	ncRNA_intronic
CAediting_1420913	chr20_35629761_-	ncRNA_intronic
CAediting_1420914	chr20_35629774_-	ncRNA_intronic
CAediting_1420915	chr20_35629783_-	ncRNA_intronic
CAediting_1420916	chr20_35629787_-	ncRNA_intronic
CAediting_1420917	chr20_35629797_-	ncRNA_intronic
CAediting_1420918	chr20_35629807_-	ncRNA_intronic
CAediting_1420919	chr20_35629812_-	ncRNA_intronic
CAediting_1420920	chr20_35629818_-	ncRNA_intronic
CAediting_1420921	chr20_35629823_-	ncRNA_intronic
CAediting_1420922	chr20_35629826_-	ncRNA_intronic
CAediting_1420923	chr20_35629827_-	ncRNA_intronic
CAediting_1420924	chr20_35629828_-	ncRNA_intronic
CAediting_1420925	chr20_35629829_-	ncRNA_intronic
CAediting_1420926	chr20_35629830_-	ncRNA_intronic
CAediting_1420927	chr20_35629832_-	ncRNA_intronic
CAediting_1420928	chr20_35629835_-	ncRNA_intronic
CAediting_1420929	chr20_35629836_-	ncRNA_intronic
CAediting_1420930	chr20_35629837_-	ncRNA_intronic
CAediting_1420931	chr20_35629838_-	ncRNA_intronic
CAediting_1420932	chr20_35629852_-	ncRNA_intronic
CAediting_1420933	chr20_35629853_-	ncRNA_intronic
CAediting_1420934	chr20_35629854_-	ncRNA_intronic
CAediting_1420935	chr20_35629855_-	ncRNA_intronic
CAediting_1420936	chr20_35629862_-	ncRNA_intronic
CAediting_1420937	chr20_35629863_-	ncRNA_intronic
CAediting_1420938	chr20_35629864_-	ncRNA_intronic
CAediting_1420939	chr20_35629875_-	ncRNA_intronic
CAediting_1420940	chr20_35629882_-	ncRNA_intronic
CAediting_1420941	chr20_35629883_-	ncRNA_intronic
CAediting_1420942	chr20_35629886_-	ncRNA_intronic
CAediting_1420943	chr20_35629891_-	ncRNA_intronic
CAediting_1420944	chr20_35629909_-	ncRNA_intronic
CAediting_1420945	chr20_35629910_-	ncRNA_intronic
CAediting_1420946	chr20_35629915_-	ncRNA_intronic
CAediting_1420947	chr20_35629934_-	ncRNA_intronic
CAediting_1420948	chr20_35629957_-	ncRNA_intronic
CAediting_1420949	chr20_35629962_-	ncRNA_intronic
CAediting_1420950	chr20_35630013_-	ncRNA_intronic
CAediting_1420951	chr20_35630021_-	ncRNA_intronic
CAediting_1420952	chr20_35630037_-	ncRNA_intronic
CAediting_1420953	chr20_35630049_-	ncRNA_intronic
CAediting_1420954	chr20_35630077_-	ncRNA_intronic
CAediting_1420955	chr20_35630082_-	ncRNA_intronic
CAediting_1420956	chr20_35630124_-	ncRNA_intronic
CAediting_1420957	chr20_35630128_-	ncRNA_intronic
CAediting_1420958	chr20_35630131_-	ncRNA_intronic
CAediting_1420959	chr20_35630137_-	ncRNA_intronic
CAediting_1420960	chr20_35630145_-	ncRNA_intronic
CAediting_1420961	chr20_35630146_-	ncRNA_intronic
CAediting_1420962	chr20_35630170_-	ncRNA_intronic
CAediting_1420963	chr20_35630172_-	ncRNA_intronic
CAediting_1420964	chr20_35630182_-	ncRNA_intronic
CAediting_1420965	chr20_35630185_-	ncRNA_intronic
CAediting_1420966	chr20_35630194_-	ncRNA_intronic
CAediting_1420967	chr20_35630208_-	ncRNA_intronic
CAediting_1420968	chr20_35630211_-	ncRNA_intronic
CAediting_1420969	chr20_35630231_-	ncRNA_intronic
CAediting_1420970	chr20_35630238_-	ncRNA_intronic
CAediting_1420971	chr20_35630243_-	ncRNA_intronic
CAediting_1420972	chr20_35630249_-	ncRNA_intronic
CAediting_1420973	chr20_35630287_-	ncRNA_intronic
CAediting_1420974	chr20_35630289_-	ncRNA_intronic
CAediting_1420975	chr20_35630290_-	ncRNA_intronic
CAediting_1420976	chr20_35630291_-	ncRNA_intronic
CAediting_1420977	chr20_35630293_-	ncRNA_intronic
CAediting_1420978	chr20_35633843_-	ncRNA_intronic
CAediting_1420979	chr20_35633873_-	ncRNA_intronic
CAediting_1420980	chr20_35634431_-	ncRNA_intronic
CAediting_1420981	chr20_35634470_-	ncRNA_intronic
CAediting_1420982	chr20_35634472_-	ncRNA_intronic
CAediting_1420983	chr20_35634485_-	ncRNA_intronic
CAediting_1420984	chr20_35634511_-	ncRNA_intronic
CAediting_1420985	chr20_35634512_-	ncRNA_intronic
CAediting_1420986	chr20_35634525_-	ncRNA_intronic
CAediting_1420987	chr20_35634537_-	ncRNA_intronic
CAediting_1420988	chr20_35634590_-	ncRNA_intronic
CAediting_1420989	chr20_35634591_-	ncRNA_intronic
CAediting_1420990	chr20_35634791_-	ncRNA_intronic
CAediting_1420991	chr20_35634799_-	ncRNA_intronic
CAediting_1420992	chr20_35634811_-	ncRNA_intronic
CAediting_1420993	chr20_35634824_-	ncRNA_intronic
CAediting_1420994	chr20_35634830_-	ncRNA_intronic
CAediting_1420995	chr20_35634831_-	ncRNA_intronic
CAediting_1420996	chr20_35634835_-	ncRNA_intronic
CAediting_1420997	chr20_35634836_-	ncRNA_intronic
CAediting_1420998	chr20_35634872_-	ncRNA_intronic
CAediting_1420999	chr20_35634878_-	ncRNA_intronic
CAediting_1421000	chr20_35634884_-	ncRNA_intronic
CAediting_1421001	chr20_35634904_-	ncRNA_intronic
CAediting_1421002	chr20_35634906_-	ncRNA_intronic
CAediting_1421003	chr20_35634907_-	ncRNA_intronic
CAediting_1421004	chr20_35634908_-	ncRNA_intronic
CAediting_1421005	chr20_35634910_-	ncRNA_intronic
CAediting_1421006	chr20_35634913_-	ncRNA_intronic
CAediting_1421007	chr20_35634917_-	ncRNA_intronic
CAediting_1421008	chr20_35634926_-	ncRNA_intronic
CAediting_1421009	chr20_35634939_-	ncRNA_intronic
CAediting_1421010	chr20_35634943_-	ncRNA_intronic
CAediting_1421011	chr20_35634947_-	ncRNA_intronic
CAediting_1421012	chr20_35635000_-	ncRNA_intronic
CAediting_1421013	chr20_35635011_-	ncRNA_intronic
CAediting_1421014	chr20_35635019_-	ncRNA_intronic
CAediting_1421015	chr20_35636646_-	ncRNA_intronic
CAediting_1421016	chr20_35639415_-	ncRNA_intronic
CAediting_1421017	chr20_35639442_-	ncRNA_intronic
CAediting_1421018	chr20_35639451_-	ncRNA_intronic
CAediting_1421019	chr20_35639469_-	ncRNA_intronic
CAediting_1421020	chr20_35639505_-	ncRNA_intronic
CAediting_1421021	chr20_35639544_-	ncRNA_intronic
CAediting_1421022	chr20_35645986_-	ncRNA_intronic
CAediting_1421023	chr20_35645998_-	ncRNA_intronic
CAediting_1421024	chr20_35646229_-	ncRNA_intronic
CAediting_1421025	chr20_35646423_-	ncRNA_intronic
CAediting_1421026	chr20_35646466_-	ncRNA_intronic
CAediting_1421027	chr20_35646473_-	ncRNA_intronic
CAediting_1421028	chr20_35646479_-	ncRNA_intronic
CAediting_1421029	chr20_35646495_-	ncRNA_intronic
CAediting_1421030	chr20_35646496_-	ncRNA_intronic
CAediting_1421031	chr20_35646502_-	ncRNA_intronic
CAediting_1421032	chr20_35647810_-	ncRNA_intronic
CAediting_1421033	chr20_35647812_-	ncRNA_intronic
CAediting_1421034	chr20_35647890_-	ncRNA_intronic
CAediting_1421035	chr20_35656606_-	ncRNA_intronic
CAediting_1421036	chr20_35656646_-	ncRNA_intronic
CAediting_1421037	chr20_35656796_-	ncRNA_intronic
CAediting_1421038	chr20_35657816_-	ncRNA_intronic
CAediting_1421039	chr20_35660310_-	ncRNA_intronic
CAediting_1421040	chr20_35660390_-	ncRNA_intronic
CAediting_1421041	chr20_35660395_-	ncRNA_intronic
CAediting_1421042	chr20_35660417_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1420861	chr20_35626929_-	SINE	Alu	AluSz
CAediting_1420862	chr20_35626943_-	SINE	Alu	AluSz
CAediting_1420863	chr20_35626945_-	SINE	Alu	AluSz
CAediting_1420864	chr20_35626953_-	SINE	Alu	AluSz
CAediting_1420865	chr20_35626970_-	SINE	Alu	AluSz
CAediting_1420866	chr20_35626971_-	SINE	Alu	AluSz
CAediting_1420867	chr20_35626976_-	SINE	Alu	AluSz
CAediting_1420868	chr20_35626985_-	SINE	Alu	AluSz
CAediting_1420869	chr20_35626987_-	SINE	Alu	AluSz
CAediting_1420870	chr20_35627005_-	SINE	Alu	AluSz
CAediting_1420871	chr20_35627018_-	SINE	Alu	AluSz
CAediting_1420872	chr20_35627022_-	SINE	Alu	AluSz
CAediting_1420873	chr20_35627033_-	SINE	Alu	AluSz
CAediting_1420874	chr20_35627039_-	SINE	Alu	AluSz
CAediting_1420875	chr20_35627044_-	SINE	Alu	AluSz
CAediting_1420876	chr20_35627050_-	SINE	Alu	AluSz
CAediting_1420877	chr20_35627066_-	SINE	Alu	AluSz
CAediting_1420878	chr20_35627076_-	SINE	Alu	AluSz
CAediting_1420879	chr20_35627079_-	SINE	Alu	AluSz
CAediting_1420880	chr20_35627088_-	SINE	Alu	AluSz
CAediting_1420881	chr20_35627105_-	SINE	Alu	AluSz
CAediting_1420882	chr20_35627106_-	SINE	Alu	AluSz
CAediting_1420883	chr20_35627125_-	SINE	Alu	AluSz
CAediting_1420884	chr20_35627126_-	SINE	Alu	AluSz
CAediting_1420885	chr20_35627136_-	SINE	Alu	AluSz
CAediting_1420886	chr20_35627146_-	SINE	Alu	AluSz
CAediting_1420887	chr20_35627166_-	SINE	Alu	AluSz
CAediting_1420888	chr20_35627186_-	SINE	Alu	AluSz
CAediting_1420889	chr20_35627880_-	SINE	Alu	FLAM_A
CAediting_1420890	chr20_35627901_-	SINE	Alu	FLAM_A
CAediting_1420891	chr20_35627924_-	SINE	Alu	FLAM_A
CAediting_1420892	chr20_35627927_-	SINE	Alu	FLAM_A
CAediting_1420893	chr20_35627928_-	SINE	Alu	FLAM_A
CAediting_1420894	chr20_35627940_-	SINE	Alu	FLAM_A
CAediting_1420895	chr20_35627952_-	SINE	Alu	FLAM_A
CAediting_1420896	chr20_35628163_-	SINE	Alu	AluYm1
CAediting_1420897	chr20_35628176_-	SINE	Alu	AluYm1
CAediting_1420898	chr20_35628185_-	SINE	Alu	AluYm1
CAediting_1420899	chr20_35628198_-	SINE	Alu	AluYm1
CAediting_1420900	chr20_35628238_-	SINE	Alu	AluYm1
CAediting_1420901	chr20_35628251_-	SINE	Alu	AluYm1
CAediting_1420902	chr20_35628263_-	SINE	Alu	AluYm1
CAediting_1420903	chr20_35628281_-	SINE	Alu	AluYm1
CAediting_1420904	chr20_35628283_-	SINE	Alu	AluYm1
CAediting_1420905	chr20_35628509_-	LINE	L1	L1MC4
CAediting_1420906	chr20_35629589_-	SINE	MIR	MIR
CAediting_1420907	chr20_35629679_-	SINE	Alu	AluJb
CAediting_1420908	chr20_35629688_-	SINE	Alu	AluJb
CAediting_1420909	chr20_35629715_-	SINE	Alu	AluJb
CAediting_1420910	chr20_35629748_-	SINE	Alu	AluJb
CAediting_1420911	chr20_35629751_-	SINE	Alu	AluJb
CAediting_1420912	chr20_35629756_-	SINE	Alu	AluJb
CAediting_1420913	chr20_35629761_-	SINE	Alu	AluJb
CAediting_1420914	chr20_35629774_-	SINE	Alu	AluJb
CAediting_1420915	chr20_35629783_-	SINE	Alu	AluJb
CAediting_1420916	chr20_35629787_-	SINE	Alu	AluJb
CAediting_1420917	chr20_35629797_-	SINE	Alu	AluJb
CAediting_1420918	chr20_35629807_-	SINE	Alu	AluJb
CAediting_1420919	chr20_35629812_-	SINE	Alu	AluJb
CAediting_1420920	chr20_35629818_-	SINE	Alu	AluJb
CAediting_1420921	chr20_35629823_-	SINE	Alu	AluJb
CAediting_1420922	chr20_35629826_-	SINE	Alu	AluJb
CAediting_1420923	chr20_35629827_-	SINE	Alu	AluJb
CAediting_1420924	chr20_35629828_-	SINE	Alu	AluJb
CAediting_1420925	chr20_35629829_-	SINE	Alu	AluJb
CAediting_1420926	chr20_35629830_-	SINE	Alu	AluJb
CAediting_1420927	chr20_35629832_-	SINE	Alu	AluJb
CAediting_1420928	chr20_35629835_-	SINE	Alu	AluJb
CAediting_1420929	chr20_35629836_-	SINE	Alu	AluJb
CAediting_1420930	chr20_35629837_-	SINE	Alu	AluJb
CAediting_1420931	chr20_35629838_-	SINE	Alu	AluJb
CAediting_1420932	chr20_35629852_-	SINE	Alu	AluJb
CAediting_1420933	chr20_35629853_-	SINE	Alu	AluJb
CAediting_1420934	chr20_35629854_-	SINE	Alu	AluJb
CAediting_1420935	chr20_35629855_-	SINE	Alu	AluJb
CAediting_1420936	chr20_35629862_-	SINE	Alu	AluJb
CAediting_1420937	chr20_35629863_-	SINE	Alu	AluJb
CAediting_1420938	chr20_35629864_-	SINE	Alu	AluJb
CAediting_1420939	chr20_35629875_-	SINE	Alu	AluJb
CAediting_1420940	chr20_35629882_-	SINE	Alu	AluJb
CAediting_1420941	chr20_35629883_-	SINE	Alu	AluJb
CAediting_1420942	chr20_35629886_-	SINE	Alu	AluJb
CAediting_1420943	chr20_35629891_-	SINE	Alu	AluJb
CAediting_1420944	chr20_35629909_-	SINE	Alu	AluJb
CAediting_1420945	chr20_35629910_-	SINE	Alu	AluJb
CAediting_1420946	chr20_35629915_-	SINE	Alu	AluJb
CAediting_1420947	chr20_35629934_-	SINE	Alu	AluJb
CAediting_1420948	chr20_35629957_-	SINE	Alu	AluJb
CAediting_1420949	chr20_35629962_-	SINE	MIR	MIR
CAediting_1420950	chr20_35630013_-	SINE	Alu	AluSx1
CAediting_1420951	chr20_35630021_-	SINE	Alu	AluSx1
CAediting_1420952	chr20_35630037_-	SINE	Alu	AluSx1
CAediting_1420953	chr20_35630049_-	SINE	Alu	AluSx1
CAediting_1420954	chr20_35630077_-	SINE	Alu	AluSx1
CAediting_1420955	chr20_35630082_-	SINE	Alu	AluSx1
CAediting_1420956	chr20_35630124_-	SINE	Alu	AluSx1
CAediting_1420957	chr20_35630128_-	SINE	Alu	AluSx1
CAediting_1420958	chr20_35630131_-	SINE	Alu	AluSx1
CAediting_1420959	chr20_35630137_-	SINE	Alu	AluSx1
CAediting_1420960	chr20_35630145_-	SINE	Alu	AluSx1
CAediting_1420961	chr20_35630146_-	SINE	Alu	AluSx1
CAediting_1420962	chr20_35630170_-	SINE	Alu	AluSx1
CAediting_1420963	chr20_35630172_-	SINE	Alu	AluSx1
CAediting_1420964	chr20_35630182_-	SINE	Alu	AluSx1
CAediting_1420965	chr20_35630185_-	SINE	Alu	AluSx1
CAediting_1420966	chr20_35630194_-	SINE	Alu	AluSx1
CAediting_1420967	chr20_35630208_-	SINE	Alu	AluSx1
CAediting_1420968	chr20_35630211_-	SINE	Alu	AluSx1
CAediting_1420969	chr20_35630231_-	SINE	Alu	AluSx1
CAediting_1420970	chr20_35630238_-	SINE	Alu	AluSx1
CAediting_1420971	chr20_35630243_-	SINE	Alu	AluSx1
CAediting_1420972	chr20_35630249_-	SINE	Alu	AluSx1
CAediting_1420973	chr20_35630287_-	SINE	Alu	AluSx1
CAediting_1420974	chr20_35630289_-	SINE	Alu	AluSx1
CAediting_1420975	chr20_35630290_-	SINE	Alu	AluSx1
CAediting_1420976	chr20_35630291_-	SINE	Alu	AluSx1
CAediting_1420977	chr20_35630293_-	SINE	Alu	AluSx1
CAediting_1420978	chr20_35633843_-	SINE	Alu	AluSq
CAediting_1420979	chr20_35633873_-	SINE	Alu	AluSq
CAediting_1420980	chr20_35634431_-	SINE	Alu	AluSx1
CAediting_1420981	chr20_35634470_-	SINE	Alu	AluSx1
CAediting_1420982	chr20_35634472_-	SINE	Alu	AluSx1
CAediting_1420983	chr20_35634485_-	SINE	Alu	AluSx1
CAediting_1420984	chr20_35634511_-	SINE	Alu	AluSx1
CAediting_1420985	chr20_35634512_-	SINE	Alu	AluSx1
CAediting_1420986	chr20_35634525_-	SINE	Alu	AluSx1
CAediting_1420987	chr20_35634537_-	SINE	Alu	AluSx1
CAediting_1420988	chr20_35634590_-	SINE	Alu	AluSx1
CAediting_1420989	chr20_35634591_-	SINE	Alu	AluSx1
CAediting_1420990	chr20_35634791_-	SINE	Alu	AluJo
CAediting_1420991	chr20_35634799_-	SINE	Alu	AluJo
CAediting_1420992	chr20_35634811_-	SINE	Alu	AluJo
CAediting_1420993	chr20_35634824_-	SINE	Alu	AluJo
CAediting_1420994	chr20_35634830_-	SINE	Alu	AluJo
CAediting_1420995	chr20_35634831_-	SINE	Alu	AluJo
CAediting_1420996	chr20_35634835_-	SINE	Alu	AluJo
CAediting_1420997	chr20_35634836_-	SINE	Alu	AluJo
CAediting_1420998	chr20_35634872_-	SINE	Alu	AluJo
CAediting_1420999	chr20_35634878_-	SINE	Alu	AluJo
CAediting_1421000	chr20_35634884_-	SINE	Alu	AluJo
CAediting_1421001	chr20_35634904_-	SINE	Alu	AluJo
CAediting_1421002	chr20_35634906_-	SINE	Alu	AluJo
CAediting_1421003	chr20_35634907_-	SINE	Alu	AluJo
CAediting_1421004	chr20_35634908_-	SINE	Alu	AluJo
CAediting_1421005	chr20_35634910_-	SINE	Alu	AluJo
CAediting_1421006	chr20_35634913_-	SINE	Alu	AluJo
CAediting_1421007	chr20_35634917_-	SINE	Alu	AluJo
CAediting_1421008	chr20_35634926_-	SINE	Alu	AluJo
CAediting_1421009	chr20_35634939_-	SINE	Alu	AluJo
CAediting_1421010	chr20_35634943_-	SINE	Alu	AluJo
CAediting_1421011	chr20_35634947_-	SINE	Alu	AluJo
CAediting_1421012	chr20_35635000_-	SINE	Alu	AluJo
CAediting_1421013	chr20_35635011_-	SINE	Alu	AluJo
CAediting_1421014	chr20_35635019_-	SINE	Alu	AluJo
CAediting_1421015	chr20_35636646_-	SINE	Alu	AluSz
CAediting_1421016	chr20_35639415_-	SINE	Alu	AluSx1
CAediting_1421017	chr20_35639442_-	SINE	Alu	AluSx1
CAediting_1421018	chr20_35639451_-	SINE	Alu	AluSx1
CAediting_1421019	chr20_35639469_-	SINE	Alu	AluSx1
CAediting_1421020	chr20_35639505_-	SINE	Alu	AluSx1
CAediting_1421021	chr20_35639544_-	SINE	Alu	AluSx1
CAediting_1421022	chr20_35645986_-	SINE	Alu	AluJb
CAediting_1421023	chr20_35645998_-	SINE	Alu	AluJb
CAediting_1421024	chr20_35646229_-	SINE	Alu	AluJb
CAediting_1421025	chr20_35646423_-	SINE	Alu	FLAM_C
CAediting_1421026	chr20_35646466_-	SINE	Alu	FLAM_C
CAediting_1421027	chr20_35646473_-	SINE	Alu	FLAM_C
CAediting_1421028	chr20_35646479_-	SINE	Alu	FLAM_C
CAediting_1421029	chr20_35646495_-	SINE	Alu	FLAM_C
CAediting_1421030	chr20_35646496_-	SINE	Alu	FLAM_C
CAediting_1421031	chr20_35646502_-	SINE	Alu	FLAM_C
CAediting_1421032	chr20_35647810_-	SINE	Alu	AluSc8
CAediting_1421033	chr20_35647812_-	SINE	Alu	AluSc8
CAediting_1421034	chr20_35647890_-	SINE	Alu	AluSc8
CAediting_1421035	chr20_35656606_-	SINE	Alu	AluSq2
CAediting_1421036	chr20_35656646_-	SINE	Alu	AluSq2
CAediting_1421037	chr20_35656796_-	SINE	Alu	AluSq2
CAediting_1421038	chr20_35657816_-	SINE	Alu	AluSq
CAediting_1421039	chr20_35660310_-	SINE	Alu	AluSz
CAediting_1421040	chr20_35660390_-	SINE	Alu	AluSz
CAediting_1421041	chr20_35660395_-	SINE	Alu	AluSz
CAediting_1421042	chr20_35660417_-	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for CPNE1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000214078.10.CPNE1.

Correlation between RNA A-to-I editing and PSI for ENSG00000214078.10.CPNE1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CPNE1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

BLCA.CAediting_1420948.ENSG00000214078.CPNE1.png
Soverview

PAAD.CAediting_1420975.ENSG00000214078.CPNE1.png
Soverview

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Protein coding region RNA A-to-I editings for CPNE1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CPNE1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688080	chr9_63819626_+	ENSG00000214078.10	ENST00000352393	hsa-miR-4477b	35626211	35626217	7mer-m8	35626210	35626229	153	-16.66
CAediting_688080	chr9_63819626_+	ENSG00000214078.10	ENST00000317677	hsa-miR-4477b	35626211	35626217	7mer-m8	35626210	35626229	153	-16.66
CAediting_688080	chr9_63819626_+	ENSG00000214078.10	ENST00000397442	hsa-miR-4477b	35626211	35626217	7mer-m8	35626210	35626229	153	-16.66
CAediting_688080	chr9_63819626_+	ENSG00000214078.10	ENST00000401607	hsa-miR-4477b	35626211	35626217	7mer-m8	35626210	35626229	153	-16.66
CAediting_393	chr1_1167164_+	ENSG00000214078.10	ENST00000439669	hsa-miR-200b-3p	35631720	35631726	7mer-m8	35631719	35631741	154	-15.74
CAediting_1054808	chr15_66496985_-	ENSG00000214078.10	ENST00000401607	hsa-miR-4512	35626251	35626257	7mer-m8	35626250	35626272	144	-18.4
CAediting_86358	chr1_109598906_+	ENSG00000214078.10	ENST00000401607	hsa-miR-197-5p	35626277	35626283	7mer-m8	35626276	35626301	159	-32.06
CAediting_77128	chr1_85133844_+	ENSG00000214078.10	ENST00000401607	hsa-miR-4423-3p	35626336	35626342	7mer-m8	35626335	35626355	140	-15.1
CAediting_468389	chr6_31355314_-	ENSG00000214078.10	ENST00000352393	hsa-miR-6891-5p	35626156	35626162	7mer-1a	35626156	35626174	149	-29.99
CAediting_468389	chr6_31355314_-	ENSG00000214078.10	ENST00000317677	hsa-miR-6891-5p	35626156	35626162	7mer-1a	35626156	35626174	149	-29.99
CAediting_468389	chr6_31355314_-	ENSG00000214078.10	ENST00000397442	hsa-miR-6891-5p	35626156	35626162	7mer-1a	35626156	35626174	149	-29.99

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CPNE1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for CPNE1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LUSC	CAediting_1420913	chr20_35629761_-	0.0294791724986737	0.288581194734233	.	.	.	.
ESCA	CAediting_1420915	chr20_35629783_-	.	.	0.0454305672318811	0.215085237433968	.	.
COAD	CAediting_1420917	chr20_35629797_-	.	.	0.0229324008078462	0.178649484481871	.	.
LUSC	CAediting_1420917	chr20_35629797_-	.	.	.	.	0.0117197223157692	0.168521554346319
BRCA	CAediting_1420921	chr20_35629823_-	0.00166911137891738	0.184129217186923	.	.	.	.
CESC	CAediting_1420921	chr20_35629823_-	0.00266608058089739	0.372201427143649	.	.	0.00971681796738632	0.323442687056772
STAD	CAediting_1420921	chr20_35629823_-	.	.	0.0373991078953317	0.184924968983279	.	.
KIRC	CAediting_1420921	chr20_35629823_-	0.0166091566557736	0.158844397592701	.	.	.	.
KIRP	CAediting_1420921	chr20_35629823_-	0.000290234471838369	0.414915274603074	.	.	.	.
ESCA	CAediting_1420921	chr20_35629823_-	.	.	0.00729091843923749	0.285782723826372	.	.
OV	CAediting_1420921	chr20_35629823_-	0.0402590128079343	0.157489636640338	.	.	.	.
LUAD	CAediting_1420923	chr20_35629827_-	0.00706868774596751	0.341508573093969	.	.	.	.
LUSC	CAediting_1420944	chr20_35629909_-	0.0415588568286084	0.237543895235896	.	.	.	.
BRCA	CAediting_1420954	chr20_35630077_-	0.0361047126697815	0.177944523745602	.	.	.	.
LUAD	CAediting_1420954	chr20_35630077_-	0.0479431004438768	0.202422439519786	.	.	.	.
LUSC	CAediting_1420954	chr20_35630077_-	0.0447776466994714	0.173016511677626	.	.	.	.
LUSC	CAediting_1420963	chr20_35630172_-	0.0431582911472025	0.17975195787307	.	.	.	.
LUSC	CAediting_1420971	chr20_35630243_-	0.00486339029461006	0.206200408426948	.	.	.	.
LUAD	CAediting_1420975	chr20_35630290_-	0.020392222524908	0.209774832025595	.	.	.	.

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Relation with cancer stages for CPNE1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_1420975	chr20_35630290_-	0.0236698596906795	0.280406990755647
BRCA	pathologic_stage	CAediting_1420929	chr20_35629836_-	0.0333227811656063	0.239755468730705
BRCA	pathologic_stage	CAediting_1420971	chr20_35630243_-	0.0225366377401075	-0.179717684078607
CESC	clinical_stage	CAediting_1420921	chr20_35629823_-	0.0465503425299234	-0.253786786403969
ESCA	pathologic_stage	CAediting_1420917	chr20_35629797_-	0.0121051465028298	0.247604616316109
ESCA	pathologic_stage	CAediting_1420921	chr20_35629823_-	0.0118415457112994	0.280140564234248
ESCA	pathologic_stage	CAediting_1420971	chr20_35630243_-	0.0263194855992572	0.291667581468434
KIRC	pathologic_stage	CAediting_1420915	chr20_35629783_-	0.000153524721976535	0.347254401950817
KIRC	pathologic_stage	CAediting_1420917	chr20_35629797_-	0.000132167160292407	0.266383735177608
KIRC	pathologic_stage	CAediting_1420948	chr20_35629957_-	4.98350174976215e-06	0.363010450229615
KIRC	pathologic_stage	CAediting_1420971	chr20_35630243_-	0.000336105447671504	0.274196191013547
KIRC	pathologic_stage	CAediting_1420975	chr20_35630290_-	0.000963517008264066	0.245353723026361
KIRP	clinical_stage	CAediting_1420921	chr20_35629823_-	0.00134190486711226	0.489661094213341
LUSC	pathologic_stage	CAediting_1420921	chr20_35629823_-	0.0019018973056482	0.200705215883903
LUSC	pathologic_stage	CAediting_1420948	chr20_35629957_-	0.00260743234245164	0.27586882162285
LUSC	pathologic_stage	CAediting_1420963	chr20_35630172_-	0.0292411338968169	0.194310797278921
SKCM	pathologic_stage	CAediting_1420963	chr20_35630172_-	0.00152318717221677	0.449570153674267

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Relation with survival for CPNE1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LGG	CAediting_1420948	chr20_35629957_-	0.000149822261463761	0.0128329	0.0021481
LGG	CAediting_1420963	chr20_35630172_-	0.00228575320591962	0.0219976	0.00134894
GBM	CAediting_1420954	chr20_35630077_-	0.0081010123443388	0.00215693	0.0132658
KIRC	CAediting_1420948	chr20_35629957_-	0.0158078190259334	0.000695295	15.1948

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RelatedDrugs for CPNE1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene	UniProtAcc	DrugBank ID	Drug name	Drug activity	Drug type	Drug status
CPNE1	Q99829	DB00277	Theophylline	Copine-1	SmallMoleculeDrug	approved

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RelatedDiseases for CPNE1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene