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Editing gene: SQSTM1 (CAeditome ID:8878)

Gene summary for SQSTM1

Gene summary

Gene information	Gene symbol	SQSTM1
	Gene ID	8878
	Gene name	sequestosome 1
	Synonyms	A170\|DMRV\|FTDALS3\|NADGP\|OSIL\|PDB3\|ZIP3\|p60\|p62\|p62B
	Cytomap	5q35.3
	Type of gene	protein-coding
	Description	sequestosome-1EBI3-associated protein of 60 kDaEBI3-associated protein p60EBIAPautophagy receptor p62oxidative stress induced likephosphotyrosine independent ligand for the Lck SH2 domain p62phosphotyrosine-independent ligand for the Lck SH2 domain
	Modification date	20210531
	UniProtAcc	Q13501
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SQSTM1	GO:0019901	Sequestosome-1	8650207
SQSTM1	GO:0031625	Sequestosome-1	27368102
SQSTM1	GO:0042169	Sequestosome-1	8650207
SQSTM1	GO:0043130	Sequestosome-1	12857745
SQSTM1	GO:0070530	Sequestosome-1	28404643
SQSTM1	GO:0006914	Sequestosome-1	20452972
SQSTM1	GO:0007032	Sequestosome-1	27368102
SQSTM1	GO:0031397	Sequestosome-1	20452972
SQSTM1	GO:0061635	Sequestosome-1	25127057
SQSTM1	GO:1905719	Sequestosome-1	27368102
SQSTM1	GO:0000932	Sequestosome-1	20357094
SQSTM1	GO:0005737	Sequestosome-1	20168092
SQSTM1	GO:0005776	Sequestosome-1	17580304
SQSTM1	GO:0005776	Sequestosome-1	19640926
SQSTM1	GO:0005776	Sequestosome-1	20168092
SQSTM1	GO:0005776	Sequestosome-1	22948227
SQSTM1	GO:0005776	Sequestosome-1	24954904
SQSTM1	GO:0005829	Sequestosome-1	0000052
SQSTM1	GO:0016234	Sequestosome-1	20168092
SQSTM1	GO:0016605	Sequestosome-1	20168092
SQSTM1	GO:0043231	Sequestosome-1	0000052
SQSTM1	GO:0044753	Sequestosome-1	19640926
SQSTM1	GO:0044754	Sequestosome-1	19640926

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RNA A-to-I events for SQSTM1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000161011.18

RNA A-to-I editing events in Cancer.

CAediting_454364(179807716, +), CAediting_454365(179807757, +), CAediting_454366(179807792, +), CAediting_454367(179807855, +), CAediting_454368(179807862, +), CAediting_454369(179807912, +), CAediting_454370(179807913, +), CAediting_454371(179808562, +), CAediting_454372(179808654, +), CAediting_454373(179808664, +), CAediting_454374(179808665, +), CAediting_454375(179808668, +), CAediting_454376(179808697, +), CAediting_454377(179808698, +), CAediting_454378(179808712, +), CAediting_454379(179808719, +), CAediting_454380(179808919, +), CAediting_454381(179808975, +), CAediting_454382(179808997, +), CAediting_454383(179809042, +), CAediting_454384(179809064, +), CAediting_454385(179809119, +), CAediting_454386(179809120, +), CAediting_454387(179809131, +), CAediting_454388(179809220, +), CAediting_454389(179809259, +), CAediting_454390(179809276, +), CAediting_454391(179809288, +), CAediting_454392(179809466, +), CAediting_454393(179809476, +), CAediting_454394(179809522, +), CAediting_454395(179809539, +), CAediting_454396(179809589, +), CAediting_454397(179809744, +), CAediting_454398(179809773, +), CAediting_454399(179809778, +), CAediting_454400(179809783, +), CAediting_454401(179809844, +), CAediting_454402(179809906, +), CAediting_454403(179809964, +), CAediting_454404(179809967, +), CAediting_454405(179809984, +), CAediting_454406(179809993, +), CAediting_454407(179810023, +), CAediting_454408(179810058, +), CAediting_454409(179811004, +), CAediting_454410(179811012, +), CAediting_454411(179811023, +), CAediting_454412(179811026, +), CAediting_454413(179811031, +), CAediting_454414(179811040, +), CAediting_454415(179811050, +), CAediting_454416(179811054, +), CAediting_454417(179811055, +), CAediting_454418(179811057, +), CAediting_454419(179811065, +), CAediting_454420(179811083, +), CAediting_454421(179811086, +), CAediting_454422(179811106, +), CAediting_454423(179811112, +), CAediting_454424(179811118, +), CAediting_454425(179811135, +), CAediting_454426(179811139, +), CAediting_454427(179811142, +), CAediting_454428(179811147, +), CAediting_454429(179811161, +), CAediting_454430(179811183, +), CAediting_454431(179811190, +), CAediting_454432(179811193, +), CAediting_454433(179811215, +), CAediting_454434(179811217, +), CAediting_454435(179811922, +), CAediting_454436(179811944, +), CAediting_454437(179812066, +), CAediting_454438(179813546, +), CAediting_454439(179813552, +), CAediting_454440(179813554, +), CAediting_454441(179813557, +), CAediting_454442(179813571, +), CAediting_454443(179813623, +), CAediting_454444(179813627, +), CAediting_454445(179813635, +), CAediting_454446(179813645, +), CAediting_454447(179813659, +), CAediting_454448(179813674, +), CAediting_454449(179813739, +), CAediting_454450(179814040, +), CAediting_454451(179814055, +), CAediting_454452(179814070, +), CAediting_454453(179814097, +), CAediting_454454(179814137, +), CAediting_454455(179814783, +), CAediting_454456(179814801, +), CAediting_454457(179814817, +), CAediting_454458(179815162, +), CAediting_454459(179815296, +), CAediting_454460(179815297, +), CAediting_454461(179816372, +), CAediting_454462(179817824, +), CAediting_454463(179817888, +), CAediting_454464(179823210, +), CAediting_454465(179823227, +), CAediting_454466(179823246, +), CAediting_454467(179823265, +), CAediting_454468(179823301, +), CAediting_454469(179823304, +), CAediting_454470(179823305, +), CAediting_454471(179823306, +), CAediting_454472(179823307, +), CAediting_454473(179823308, +), CAediting_454474(179823310, +), CAediting_454475(179823315, +), CAediting_454476(179823316, +), CAediting_454477(179823319, +), CAediting_454478(179823359, +), CAediting_454479(179823379, +), CAediting_454480(179823383, +), CAediting_454481(179823385, +), CAediting_454482(179823393, +), CAediting_454483(179823406, +), CAediting_454484(179823415, +), CAediting_454485(179823419, +), CAediting_454486(179826215, +), CAediting_454487(179826264, +), CAediting_454488(179826265, +), CAediting_454489(179826306, +), CAediting_454490(179826623, +), CAediting_454491(179826625, +), CAediting_454492(179826631, +), CAediting_454493(179826675, +), CAediting_454494(179826700, +), CAediting_454495(179826701, +), CAediting_454496(179826718, +), CAediting_454497(179826727, +), CAediting_454498(179826730, +), CAediting_454499(179826750, +), CAediting_454500(179826762, +), CAediting_454501(179826766, +), CAediting_454502(179826784, +), CAediting_454503(179826786, +), CAediting_454504(179826810, +), CAediting_454505(179826843, +), CAediting_454506(179827402, +), CAediting_454507(179827414, +), CAediting_454508(179827424, +), CAediting_454509(179827426, +), CAediting_454510(179827434, +), CAediting_454511(179827460, +), CAediting_454512(179827469, +), CAediting_454513(179827545, +), CAediting_454514(179827546, +), CAediting_454515(179828451, +), CAediting_454516(179828474, +), CAediting_454517(179828516, +), CAediting_454518(179828520, +), CAediting_454519(179828540, +), CAediting_454520(179828636, +), CAediting_454521(179828637, +), CAediting_454522(179828648, +), CAediting_454523(179829822, +), CAediting_454524(179829832, +), CAediting_454525(179829840, +), CAediting_454526(179829846, +), CAediting_454527(179829862, +), CAediting_454528(179829863, +), CAediting_454529(179829867, +), CAediting_454530(179829871, +), CAediting_454531(179829881, +), CAediting_454532(179829897, +), CAediting_454533(179829900, +), CAediting_454534(179829910, +), CAediting_454535(179829914, +), CAediting_454536(179829945, +), CAediting_454537(179829954, +), CAediting_454538(179829959, +), CAediting_454539(179829960, +), CAediting_454540(179829967, +), CAediting_454541(179829971, +), CAediting_454542(179829983, +), CAediting_454543(179829987, +), CAediting_454544(179829995, +), CAediting_454545(179829999, +), CAediting_454546(179830006, +), CAediting_454547(179830029, +), CAediting_454548(179830037, +), CAediting_454549(179830041, +), CAediting_454550(179830050, +), CAediting_454551(179830054, +), CAediting_454552(179830066, +), CAediting_454553(179830069, +), CAediting_454554(179830074, +), CAediting_454555(179830091, +), CAediting_454556(179830094, +), CAediting_454557(179830428, +), CAediting_454558(179830434, +), CAediting_454559(179830481, +), CAediting_454560(179830482, +), CAediting_454561(179830499, +), CAediting_454562(179830511, +), CAediting_454563(179830633, +), CAediting_454564(179830645, +), CAediting_454565(179830662, +), CAediting_454566(179830675, +), CAediting_454567(179830697, +), CAediting_454568(179830699, +), CAediting_454569(179830703, +), CAediting_454570(179830818, +), CAediting_454571(179830918, +), CAediting_454572(179830937, +), CAediting_454573(179830964, +), CAediting_454574(179830970, +), CAediting_454575(179830976, +), CAediting_454576(179831379, +), CAediting_454577(179831406, +), CAediting_454578(179831407, +), CAediting_454579(179831412, +), CAediting_454580(179831460, +), CAediting_454581(179831497, +), CAediting_454582(179831577, +), CAediting_454583(179831582, +), CAediting_454584(179831583, +), CAediting_454585(179831612, +), CAediting_454586(179831644, +), CAediting_454587(179831646, +), CAediting_454588(179831648, +), CAediting_454589(179831675, +), CAediting_454590(179831858, +), CAediting_454591(179831883, +), CAediting_454592(179831884, +), CAediting_454593(179831888, +), CAediting_454594(179831913, +), CAediting_454595(179831923, +), CAediting_454596(179831925, +), CAediting_454597(179831965, +), CAediting_454598(179831968, +), CAediting_454599(179831987, +), CAediting_454600(179831990, +), CAediting_454601(179832045, +), CAediting_454602(179832057, +),

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RNA editing positional annotations for SQSTM1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_454364	chr5_179807716_+	ncRNA_exonic
CAediting_454365	chr5_179807757_+	ncRNA_exonic
CAediting_454366	chr5_179807792_+	ncRNA_exonic
CAediting_454367	chr5_179807855_+	ncRNA_exonic
CAediting_454368	chr5_179807862_+	ncRNA_exonic
CAediting_454369	chr5_179807912_+	ncRNA_exonic
CAediting_454370	chr5_179807913_+	ncRNA_exonic
CAediting_454371	chr5_179808562_+	ncRNA_intronic
CAediting_454372	chr5_179808654_+	ncRNA_intronic
CAediting_454373	chr5_179808664_+	ncRNA_intronic
CAediting_454374	chr5_179808665_+	ncRNA_intronic
CAediting_454375	chr5_179808668_+	ncRNA_intronic
CAediting_454376	chr5_179808697_+	ncRNA_intronic
CAediting_454377	chr5_179808698_+	ncRNA_intronic
CAediting_454378	chr5_179808712_+	ncRNA_intronic
CAediting_454379	chr5_179808719_+	ncRNA_intronic
CAediting_454380	chr5_179808919_+	ncRNA_intronic
CAediting_454381	chr5_179808975_+	ncRNA_intronic
CAediting_454382	chr5_179808997_+	ncRNA_intronic
CAediting_454383	chr5_179809042_+	ncRNA_intronic
CAediting_454384	chr5_179809064_+	ncRNA_intronic
CAediting_454385	chr5_179809119_+	ncRNA_intronic
CAediting_454386	chr5_179809120_+	ncRNA_intronic
CAediting_454387	chr5_179809131_+	ncRNA_intronic
CAediting_454388	chr5_179809220_+	ncRNA_intronic
CAediting_454389	chr5_179809259_+	ncRNA_intronic
CAediting_454390	chr5_179809276_+	ncRNA_intronic
CAediting_454391	chr5_179809288_+	ncRNA_intronic
CAediting_454392	chr5_179809466_+	ncRNA_intronic
CAediting_454393	chr5_179809476_+	ncRNA_intronic
CAediting_454394	chr5_179809522_+	ncRNA_intronic
CAediting_454395	chr5_179809539_+	ncRNA_intronic
CAediting_454396	chr5_179809589_+	ncRNA_intronic
CAediting_454397	chr5_179809744_+	ncRNA_intronic
CAediting_454398	chr5_179809773_+	ncRNA_intronic
CAediting_454399	chr5_179809778_+	ncRNA_intronic
CAediting_454400	chr5_179809783_+	ncRNA_intronic
CAediting_454401	chr5_179809844_+	ncRNA_intronic
CAediting_454402	chr5_179809906_+	ncRNA_intronic
CAediting_454403	chr5_179809964_+	ncRNA_intronic
CAediting_454404	chr5_179809967_+	ncRNA_intronic
CAediting_454405	chr5_179809984_+	ncRNA_intronic
CAediting_454406	chr5_179809993_+	ncRNA_intronic
CAediting_454407	chr5_179810023_+	ncRNA_intronic
CAediting_454408	chr5_179810058_+	ncRNA_intronic
CAediting_454409	chr5_179811004_+	ncRNA_intronic
CAediting_454410	chr5_179811012_+	ncRNA_intronic
CAediting_454411	chr5_179811023_+	ncRNA_intronic
CAediting_454412	chr5_179811026_+	ncRNA_intronic
CAediting_454413	chr5_179811031_+	ncRNA_intronic
CAediting_454414	chr5_179811040_+	ncRNA_intronic
CAediting_454415	chr5_179811050_+	ncRNA_intronic
CAediting_454416	chr5_179811054_+	ncRNA_intronic
CAediting_454417	chr5_179811055_+	ncRNA_intronic
CAediting_454418	chr5_179811057_+	ncRNA_intronic
CAediting_454419	chr5_179811065_+	ncRNA_intronic
CAediting_454420	chr5_179811083_+	ncRNA_intronic
CAediting_454421	chr5_179811086_+	ncRNA_intronic
CAediting_454422	chr5_179811106_+	ncRNA_intronic
CAediting_454423	chr5_179811112_+	ncRNA_intronic
CAediting_454424	chr5_179811118_+	ncRNA_intronic
CAediting_454425	chr5_179811135_+	ncRNA_intronic
CAediting_454426	chr5_179811139_+	ncRNA_intronic
CAediting_454427	chr5_179811142_+	ncRNA_intronic
CAediting_454428	chr5_179811147_+	ncRNA_intronic
CAediting_454429	chr5_179811161_+	ncRNA_intronic
CAediting_454430	chr5_179811183_+	ncRNA_intronic
CAediting_454431	chr5_179811190_+	ncRNA_intronic
CAediting_454432	chr5_179811193_+	ncRNA_intronic
CAediting_454433	chr5_179811215_+	ncRNA_intronic
CAediting_454434	chr5_179811217_+	ncRNA_intronic
CAediting_454435	chr5_179811922_+	ncRNA_intronic
CAediting_454436	chr5_179811944_+	ncRNA_intronic
CAediting_454437	chr5_179812066_+	ncRNA_exonic
CAediting_454438	chr5_179813546_+	ncRNA_exonic
CAediting_454439	chr5_179813552_+	ncRNA_exonic
CAediting_454440	chr5_179813554_+	ncRNA_exonic
CAediting_454441	chr5_179813557_+	ncRNA_exonic
CAediting_454442	chr5_179813571_+	ncRNA_exonic
CAediting_454443	chr5_179813623_+	ncRNA_exonic
CAediting_454444	chr5_179813627_+	ncRNA_exonic
CAediting_454445	chr5_179813635_+	ncRNA_exonic
CAediting_454446	chr5_179813645_+	intronic
CAediting_454447	chr5_179813659_+	intronic
CAediting_454448	chr5_179813674_+	intronic
CAediting_454449	chr5_179813739_+	intronic
CAediting_454450	chr5_179814040_+	intronic
CAediting_454451	chr5_179814055_+	intronic
CAediting_454452	chr5_179814070_+	intronic
CAediting_454453	chr5_179814097_+	intronic
CAediting_454454	chr5_179814137_+	intronic
CAediting_454455	chr5_179814783_+	intronic
CAediting_454456	chr5_179814801_+	intronic
CAediting_454457	chr5_179814817_+	intronic
CAediting_454458	chr5_179815162_+	intronic
CAediting_454459	chr5_179815296_+	intronic
CAediting_454460	chr5_179815297_+	intronic
CAediting_454461	chr5_179816372_+	intronic
CAediting_454462	chr5_179817824_+	intronic
CAediting_454463	chr5_179817888_+	intronic
CAediting_454464	chr5_179823210_+	ncRNA_intronic
CAediting_454465	chr5_179823227_+	ncRNA_intronic
CAediting_454466	chr5_179823246_+	ncRNA_intronic
CAediting_454467	chr5_179823265_+	ncRNA_intronic
CAediting_454468	chr5_179823301_+	ncRNA_intronic
CAediting_454469	chr5_179823304_+	ncRNA_intronic
CAediting_454470	chr5_179823305_+	ncRNA_intronic
CAediting_454471	chr5_179823306_+	ncRNA_intronic
CAediting_454472	chr5_179823307_+	ncRNA_intronic
CAediting_454473	chr5_179823308_+	ncRNA_intronic
CAediting_454474	chr5_179823310_+	ncRNA_intronic
CAediting_454475	chr5_179823315_+	ncRNA_intronic
CAediting_454476	chr5_179823316_+	ncRNA_intronic
CAediting_454477	chr5_179823319_+	ncRNA_intronic
CAediting_454478	chr5_179823359_+	ncRNA_intronic
CAediting_454479	chr5_179823379_+	ncRNA_intronic
CAediting_454480	chr5_179823383_+	ncRNA_intronic
CAediting_454481	chr5_179823385_+	ncRNA_intronic
CAediting_454482	chr5_179823393_+	ncRNA_intronic
CAediting_454483	chr5_179823406_+	ncRNA_intronic
CAediting_454484	chr5_179823415_+	ncRNA_intronic
CAediting_454485	chr5_179823419_+	ncRNA_intronic
CAediting_454486	chr5_179826215_+	ncRNA_intronic
CAediting_454487	chr5_179826264_+	ncRNA_intronic
CAediting_454488	chr5_179826265_+	ncRNA_intronic
CAediting_454489	chr5_179826306_+	ncRNA_intronic
CAediting_454490	chr5_179826623_+	ncRNA_intronic
CAediting_454491	chr5_179826625_+	ncRNA_intronic
CAediting_454492	chr5_179826631_+	ncRNA_intronic
CAediting_454493	chr5_179826675_+	ncRNA_intronic
CAediting_454494	chr5_179826700_+	ncRNA_intronic
CAediting_454495	chr5_179826701_+	ncRNA_intronic
CAediting_454496	chr5_179826718_+	ncRNA_intronic
CAediting_454497	chr5_179826727_+	ncRNA_intronic
CAediting_454498	chr5_179826730_+	ncRNA_intronic
CAediting_454499	chr5_179826750_+	ncRNA_intronic
CAediting_454500	chr5_179826762_+	ncRNA_intronic
CAediting_454501	chr5_179826766_+	ncRNA_intronic
CAediting_454502	chr5_179826784_+	ncRNA_intronic
CAediting_454503	chr5_179826786_+	ncRNA_intronic
CAediting_454504	chr5_179826810_+	ncRNA_intronic
CAediting_454505	chr5_179826843_+	ncRNA_intronic
CAediting_454506	chr5_179827402_+	ncRNA_intronic
CAediting_454507	chr5_179827414_+	ncRNA_intronic
CAediting_454508	chr5_179827424_+	ncRNA_intronic
CAediting_454509	chr5_179827426_+	ncRNA_intronic
CAediting_454510	chr5_179827434_+	ncRNA_intronic
CAediting_454511	chr5_179827460_+	ncRNA_intronic
CAediting_454512	chr5_179827469_+	ncRNA_intronic
CAediting_454513	chr5_179827545_+	ncRNA_intronic
CAediting_454514	chr5_179827546_+	ncRNA_intronic
CAediting_454515	chr5_179828451_+	ncRNA_intronic
CAediting_454516	chr5_179828474_+	ncRNA_intronic
CAediting_454517	chr5_179828516_+	ncRNA_intronic
CAediting_454518	chr5_179828520_+	ncRNA_intronic
CAediting_454519	chr5_179828540_+	ncRNA_intronic
CAediting_454520	chr5_179828636_+	ncRNA_intronic
CAediting_454521	chr5_179828637_+	ncRNA_intronic
CAediting_454522	chr5_179828648_+	ncRNA_intronic
CAediting_454523	chr5_179829822_+	ncRNA_intronic
CAediting_454524	chr5_179829832_+	ncRNA_intronic
CAediting_454525	chr5_179829840_+	ncRNA_intronic
CAediting_454526	chr5_179829846_+	ncRNA_intronic
CAediting_454527	chr5_179829862_+	ncRNA_intronic
CAediting_454528	chr5_179829863_+	ncRNA_intronic
CAediting_454529	chr5_179829867_+	ncRNA_intronic
CAediting_454530	chr5_179829871_+	ncRNA_intronic
CAediting_454531	chr5_179829881_+	ncRNA_intronic
CAediting_454532	chr5_179829897_+	ncRNA_intronic
CAediting_454533	chr5_179829900_+	ncRNA_intronic
CAediting_454534	chr5_179829910_+	ncRNA_intronic
CAediting_454535	chr5_179829914_+	ncRNA_intronic
CAediting_454536	chr5_179829945_+	ncRNA_intronic
CAediting_454537	chr5_179829954_+	ncRNA_intronic
CAediting_454538	chr5_179829959_+	ncRNA_intronic
CAediting_454539	chr5_179829960_+	ncRNA_intronic
CAediting_454540	chr5_179829967_+	ncRNA_intronic
CAediting_454541	chr5_179829971_+	ncRNA_intronic
CAediting_454542	chr5_179829983_+	ncRNA_intronic
CAediting_454543	chr5_179829987_+	ncRNA_intronic
CAediting_454544	chr5_179829995_+	ncRNA_intronic
CAediting_454545	chr5_179829999_+	ncRNA_intronic
CAediting_454546	chr5_179830006_+	ncRNA_intronic
CAediting_454547	chr5_179830029_+	ncRNA_intronic
CAediting_454548	chr5_179830037_+	ncRNA_intronic
CAediting_454549	chr5_179830041_+	ncRNA_intronic
CAediting_454550	chr5_179830050_+	ncRNA_intronic
CAediting_454551	chr5_179830054_+	ncRNA_intronic
CAediting_454552	chr5_179830066_+	ncRNA_intronic
CAediting_454553	chr5_179830069_+	ncRNA_intronic
CAediting_454554	chr5_179830074_+	ncRNA_intronic
CAediting_454555	chr5_179830091_+	ncRNA_intronic
CAediting_454556	chr5_179830094_+	ncRNA_intronic
CAediting_454557	chr5_179830428_+	ncRNA_intronic
CAediting_454558	chr5_179830434_+	ncRNA_intronic
CAediting_454559	chr5_179830481_+	ncRNA_intronic
CAediting_454560	chr5_179830482_+	ncRNA_intronic
CAediting_454561	chr5_179830499_+	ncRNA_intronic
CAediting_454562	chr5_179830511_+	ncRNA_intronic
CAediting_454563	chr5_179830633_+	ncRNA_intronic
CAediting_454564	chr5_179830645_+	ncRNA_intronic
CAediting_454565	chr5_179830662_+	ncRNA_intronic
CAediting_454566	chr5_179830675_+	ncRNA_intronic
CAediting_454567	chr5_179830697_+	ncRNA_intronic
CAediting_454568	chr5_179830699_+	ncRNA_intronic
CAediting_454569	chr5_179830703_+	ncRNA_intronic
CAediting_454570	chr5_179830818_+	ncRNA_intronic
CAediting_454571	chr5_179830918_+	ncRNA_intronic
CAediting_454572	chr5_179830937_+	ncRNA_intronic
CAediting_454573	chr5_179830964_+	ncRNA_intronic
CAediting_454574	chr5_179830970_+	ncRNA_intronic
CAediting_454575	chr5_179830976_+	ncRNA_intronic
CAediting_454576	chr5_179831379_+	ncRNA_intronic
CAediting_454577	chr5_179831406_+	ncRNA_intronic
CAediting_454578	chr5_179831407_+	ncRNA_intronic
CAediting_454579	chr5_179831412_+	ncRNA_intronic
CAediting_454580	chr5_179831460_+	ncRNA_intronic
CAediting_454581	chr5_179831497_+	ncRNA_intronic
CAediting_454582	chr5_179831577_+	ncRNA_intronic
CAediting_454583	chr5_179831582_+	ncRNA_intronic
CAediting_454584	chr5_179831583_+	ncRNA_intronic
CAediting_454585	chr5_179831612_+	ncRNA_intronic
CAediting_454586	chr5_179831644_+	ncRNA_intronic
CAediting_454587	chr5_179831646_+	ncRNA_intronic
CAediting_454588	chr5_179831648_+	ncRNA_intronic
CAediting_454589	chr5_179831675_+	ncRNA_intronic
CAediting_454590	chr5_179831858_+	ncRNA_intronic
CAediting_454591	chr5_179831883_+	ncRNA_intronic
CAediting_454592	chr5_179831884_+	ncRNA_intronic
CAediting_454593	chr5_179831888_+	ncRNA_intronic
CAediting_454594	chr5_179831913_+	ncRNA_intronic
CAediting_454595	chr5_179831923_+	ncRNA_intronic
CAediting_454596	chr5_179831925_+	ncRNA_intronic
CAediting_454597	chr5_179831965_+	ncRNA_intronic
CAediting_454598	chr5_179831968_+	ncRNA_intronic
CAediting_454599	chr5_179831987_+	ncRNA_intronic
CAediting_454600	chr5_179831990_+	ncRNA_intronic
CAediting_454601	chr5_179832045_+	ncRNA_intronic
CAediting_454602	chr5_179832057_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_454364	chr5_179807716_+	SINE	Alu	AluSx4
CAediting_454365	chr5_179807757_+	SINE	Alu	AluSx4
CAediting_454366	chr5_179807792_+	SINE	Alu	AluSx4
CAediting_454367	chr5_179807855_+	SINE	Alu	AluSx4
CAediting_454368	chr5_179807862_+	SINE	Alu	AluSx4
CAediting_454369	chr5_179807912_+	SINE	Alu	AluSx4
CAediting_454370	chr5_179807913_+	SINE	Alu	AluSx4
CAediting_454371	chr5_179808562_+	SINE	Alu	AluSc8
CAediting_454372	chr5_179808654_+	SINE	Alu	AluSc8
CAediting_454373	chr5_179808664_+	SINE	Alu	AluSc8
CAediting_454374	chr5_179808665_+	SINE	Alu	AluSc8
CAediting_454375	chr5_179808668_+	SINE	Alu	AluSc8
CAediting_454376	chr5_179808697_+	SINE	Alu	AluSc8
CAediting_454377	chr5_179808698_+	SINE	Alu	AluSc8
CAediting_454378	chr5_179808712_+	SINE	Alu	AluSc8
CAediting_454379	chr5_179808719_+	SINE	Alu	AluSc8
CAediting_454380	chr5_179808919_+	SINE	Alu	AluY
CAediting_454381	chr5_179808975_+	SINE	Alu	AluY
CAediting_454382	chr5_179808997_+	SINE	Alu	AluY
CAediting_454383	chr5_179809042_+	SINE	Alu	AluY
CAediting_454384	chr5_179809064_+	SINE	Alu	AluY
CAediting_454385	chr5_179809119_+	SINE	Alu	AluY
CAediting_454386	chr5_179809120_+	SINE	Alu	AluY
CAediting_454387	chr5_179809131_+	SINE	Alu	AluY
CAediting_454388	chr5_179809220_+	SINE	Alu	AluSx1
CAediting_454389	chr5_179809259_+	SINE	Alu	AluSx1
CAediting_454390	chr5_179809276_+	SINE	Alu	AluSx1
CAediting_454391	chr5_179809288_+	SINE	Alu	AluSx1
CAediting_454392	chr5_179809466_+	SINE	Alu	AluSx3
CAediting_454393	chr5_179809476_+	SINE	Alu	AluSx3
CAediting_454394	chr5_179809522_+	SINE	Alu	AluSx3
CAediting_454395	chr5_179809539_+	SINE	Alu	AluSx3
CAediting_454396	chr5_179809589_+	SINE	Alu	AluSx3
CAediting_454397	chr5_179809744_+	SINE	Alu	AluSx
CAediting_454398	chr5_179809773_+	SINE	Alu	AluSx
CAediting_454399	chr5_179809778_+	SINE	Alu	AluSx
CAediting_454400	chr5_179809783_+	SINE	Alu	AluSx
CAediting_454401	chr5_179809844_+	SINE	Alu	AluSx
CAediting_454402	chr5_179809906_+	SINE	Alu	AluSx
CAediting_454403	chr5_179809964_+	SINE	Alu	AluSx1
CAediting_454404	chr5_179809967_+	SINE	Alu	AluSx1
CAediting_454405	chr5_179809984_+	SINE	Alu	AluSx1
CAediting_454406	chr5_179809993_+	SINE	Alu	AluSx1
CAediting_454407	chr5_179810023_+	SINE	Alu	AluSx1
CAediting_454408	chr5_179810058_+	SINE	Alu	AluSx1
CAediting_454409	chr5_179811004_+	SINE	Alu	AluY
CAediting_454410	chr5_179811012_+	SINE	Alu	AluY
CAediting_454411	chr5_179811023_+	SINE	Alu	AluY
CAediting_454412	chr5_179811026_+	SINE	Alu	AluY
CAediting_454413	chr5_179811031_+	SINE	Alu	AluY
CAediting_454414	chr5_179811040_+	SINE	Alu	AluY
CAediting_454415	chr5_179811050_+	SINE	Alu	AluY
CAediting_454416	chr5_179811054_+	SINE	Alu	AluY
CAediting_454417	chr5_179811055_+	SINE	Alu	AluY
CAediting_454418	chr5_179811057_+	SINE	Alu	AluY
CAediting_454419	chr5_179811065_+	SINE	Alu	AluY
CAediting_454420	chr5_179811083_+	SINE	Alu	AluY
CAediting_454421	chr5_179811086_+	SINE	Alu	AluY
CAediting_454422	chr5_179811106_+	SINE	Alu	AluY
CAediting_454423	chr5_179811112_+	SINE	Alu	AluY
CAediting_454424	chr5_179811118_+	SINE	Alu	AluY
CAediting_454425	chr5_179811135_+	SINE	Alu	AluY
CAediting_454426	chr5_179811139_+	SINE	Alu	AluY
CAediting_454427	chr5_179811142_+	SINE	Alu	AluY
CAediting_454428	chr5_179811147_+	SINE	Alu	AluY
CAediting_454429	chr5_179811161_+	SINE	Alu	AluY
CAediting_454430	chr5_179811183_+	SINE	Alu	AluY
CAediting_454431	chr5_179811190_+	SINE	Alu	AluY
CAediting_454432	chr5_179811193_+	SINE	Alu	AluY
CAediting_454433	chr5_179811215_+	SINE	Alu	AluY
CAediting_454434	chr5_179811217_+	SINE	Alu	AluY
CAediting_454435	chr5_179811922_+	SINE	Alu	AluY
CAediting_454436	chr5_179811944_+	SINE	Alu	AluY
CAediting_454437	chr5_179812066_+	SINE	Alu	AluY
CAediting_454438	chr5_179813546_+	SINE	Alu	AluJr4
CAediting_454439	chr5_179813552_+	SINE	Alu	AluJr4
CAediting_454440	chr5_179813554_+	SINE	Alu	AluJr4
CAediting_454441	chr5_179813557_+	SINE	Alu	AluJr4
CAediting_454442	chr5_179813571_+	SINE	Alu	AluJr4
CAediting_454443	chr5_179813623_+	SINE	Alu	AluJr4
CAediting_454444	chr5_179813627_+	SINE	Alu	AluJr4
CAediting_454445	chr5_179813635_+	SINE	Alu	AluJr4
CAediting_454446	chr5_179813645_+	SINE	Alu	AluJr4
CAediting_454447	chr5_179813659_+	SINE	Alu	AluJr4
CAediting_454448	chr5_179813674_+	SINE	Alu	AluJr4
CAediting_454449	chr5_179813739_+	SINE	Alu	AluJr4
CAediting_454450	chr5_179814040_+	SINE	Alu	FLAM_A
CAediting_454451	chr5_179814055_+	SINE	Alu	FLAM_A
CAediting_454452	chr5_179814070_+	SINE	Alu	FLAM_A
CAediting_454453	chr5_179814097_+	SINE	Alu	FLAM_A
CAediting_454454	chr5_179814137_+	SINE	Alu	FLAM_A
CAediting_454455	chr5_179814783_+	SINE	Alu	AluJr
CAediting_454456	chr5_179814801_+	SINE	Alu	AluJr
CAediting_454457	chr5_179814817_+	SINE	Alu	AluJr
CAediting_454458	chr5_179815162_+	SINE	Alu	AluSz6
CAediting_454459	chr5_179815296_+	SINE	Alu	AluSz6
CAediting_454460	chr5_179815297_+	SINE	Alu	AluSz6
CAediting_454461	chr5_179816372_+	SINE	Alu	AluSx3
CAediting_454462	chr5_179817824_+	SINE	Alu	AluSx1
CAediting_454463	chr5_179817888_+	SINE	Alu	AluSx1
CAediting_454464	chr5_179823210_+	SINE	Alu	AluSx
CAediting_454465	chr5_179823227_+	SINE	Alu	AluSx
CAediting_454466	chr5_179823246_+	SINE	Alu	AluSx
CAediting_454467	chr5_179823265_+	SINE	Alu	AluSx
CAediting_454468	chr5_179823301_+	SINE	Alu	AluSx
CAediting_454469	chr5_179823304_+	SINE	Alu	AluSx
CAediting_454470	chr5_179823305_+	SINE	Alu	AluSx
CAediting_454471	chr5_179823306_+	SINE	Alu	AluSx
CAediting_454472	chr5_179823307_+	SINE	Alu	AluSx
CAediting_454473	chr5_179823308_+	SINE	Alu	AluSx
CAediting_454474	chr5_179823310_+	SINE	Alu	AluSx
CAediting_454475	chr5_179823315_+	SINE	Alu	AluSx
CAediting_454476	chr5_179823316_+	SINE	Alu	AluSx
CAediting_454477	chr5_179823319_+	SINE	Alu	AluSx
CAediting_454478	chr5_179823359_+	SINE	Alu	AluSx
CAediting_454479	chr5_179823379_+	SINE	Alu	AluSx
CAediting_454480	chr5_179823383_+	SINE	Alu	AluSx
CAediting_454481	chr5_179823385_+	SINE	Alu	AluSx
CAediting_454482	chr5_179823393_+	SINE	Alu	AluSx
CAediting_454483	chr5_179823406_+	SINE	Alu	AluSx
CAediting_454484	chr5_179823415_+	SINE	Alu	AluSx
CAediting_454485	chr5_179823419_+	SINE	Alu	AluSx
CAediting_454486	chr5_179826215_+	SINE	Alu	AluSx1
CAediting_454487	chr5_179826264_+	SINE	Alu	AluSx1
CAediting_454488	chr5_179826265_+	SINE	Alu	AluSx1
CAediting_454489	chr5_179826306_+	SINE	Alu	AluSx1
CAediting_454490	chr5_179826623_+	SINE	Alu	AluSq2
CAediting_454491	chr5_179826625_+	SINE	Alu	AluSq2
CAediting_454492	chr5_179826631_+	SINE	Alu	AluSq2
CAediting_454493	chr5_179826675_+	SINE	Alu	AluSq2
CAediting_454494	chr5_179826700_+	SINE	Alu	AluSq2
CAediting_454495	chr5_179826701_+	SINE	Alu	AluSq2
CAediting_454496	chr5_179826718_+	SINE	Alu	AluSq2
CAediting_454497	chr5_179826727_+	SINE	Alu	AluSq2
CAediting_454498	chr5_179826730_+	SINE	Alu	AluSq2
CAediting_454499	chr5_179826750_+	SINE	Alu	AluSq2
CAediting_454500	chr5_179826762_+	SINE	Alu	AluSq2
CAediting_454501	chr5_179826766_+	SINE	Alu	AluSq2
CAediting_454502	chr5_179826784_+	SINE	Alu	AluSq2
CAediting_454503	chr5_179826786_+	SINE	Alu	AluSq2
CAediting_454504	chr5_179826810_+	SINE	Alu	AluSq2
CAediting_454505	chr5_179826843_+	SINE	Alu	AluSq2
CAediting_454506	chr5_179827402_+	SINE	Alu	AluY
CAediting_454507	chr5_179827414_+	SINE	Alu	AluY
CAediting_454508	chr5_179827424_+	SINE	Alu	AluY
CAediting_454509	chr5_179827426_+	SINE	Alu	AluY
CAediting_454510	chr5_179827434_+	SINE	Alu	AluY
CAediting_454511	chr5_179827460_+	SINE	Alu	AluY
CAediting_454512	chr5_179827469_+	SINE	Alu	AluY
CAediting_454513	chr5_179827545_+	SINE	Alu	AluY
CAediting_454514	chr5_179827546_+	SINE	Alu	AluY
CAediting_454515	chr5_179828451_+	SINE	Alu	AluSp
CAediting_454516	chr5_179828474_+	SINE	Alu	AluSp
CAediting_454517	chr5_179828516_+	SINE	Alu	AluSp
CAediting_454518	chr5_179828520_+	SINE	Alu	AluSp
CAediting_454519	chr5_179828540_+	SINE	Alu	AluSp
CAediting_454520	chr5_179828636_+	SINE	Alu	AluSp
CAediting_454521	chr5_179828637_+	SINE	Alu	AluSp
CAediting_454522	chr5_179828648_+	SINE	Alu	AluSp
CAediting_454523	chr5_179829822_+	SINE	Alu	AluJb
CAediting_454524	chr5_179829832_+	SINE	Alu	AluJb
CAediting_454525	chr5_179829840_+	SINE	Alu	AluJb
CAediting_454526	chr5_179829846_+	SINE	Alu	AluJb
CAediting_454527	chr5_179829862_+	SINE	Alu	AluJb
CAediting_454528	chr5_179829863_+	SINE	Alu	AluJb
CAediting_454529	chr5_179829867_+	SINE	Alu	AluJb
CAediting_454530	chr5_179829871_+	SINE	Alu	AluJb
CAediting_454531	chr5_179829881_+	SINE	Alu	AluJb
CAediting_454532	chr5_179829897_+	SINE	Alu	AluJb
CAediting_454533	chr5_179829900_+	SINE	Alu	AluJb
CAediting_454534	chr5_179829910_+	SINE	Alu	AluJb
CAediting_454535	chr5_179829914_+	SINE	Alu	AluJb
CAediting_454536	chr5_179829945_+	SINE	Alu	AluJb
CAediting_454537	chr5_179829954_+	SINE	Alu	AluJb
CAediting_454538	chr5_179829959_+	SINE	Alu	AluJb
CAediting_454539	chr5_179829960_+	SINE	Alu	AluJb
CAediting_454540	chr5_179829967_+	SINE	Alu	AluJb
CAediting_454541	chr5_179829971_+	SINE	Alu	AluJb
CAediting_454542	chr5_179829983_+	SINE	Alu	AluJb
CAediting_454543	chr5_179829987_+	SINE	Alu	AluJb
CAediting_454544	chr5_179829995_+	SINE	Alu	AluJb
CAediting_454545	chr5_179829999_+	SINE	Alu	AluJb
CAediting_454546	chr5_179830006_+	SINE	Alu	AluJb
CAediting_454547	chr5_179830029_+	SINE	Alu	AluJb
CAediting_454548	chr5_179830037_+	SINE	Alu	AluJb
CAediting_454549	chr5_179830041_+	SINE	Alu	AluJb
CAediting_454550	chr5_179830050_+	SINE	Alu	AluJb
CAediting_454551	chr5_179830054_+	SINE	Alu	AluJb
CAediting_454552	chr5_179830066_+	SINE	Alu	AluJb
CAediting_454553	chr5_179830069_+	SINE	Alu	AluJb
CAediting_454554	chr5_179830074_+	SINE	Alu	AluJb
CAediting_454555	chr5_179830091_+	SINE	Alu	AluJb
CAediting_454556	chr5_179830094_+	SINE	Alu	AluJb
CAediting_454557	chr5_179830428_+	SINE	Alu	AluJo
CAediting_454558	chr5_179830434_+	SINE	Alu	AluJo
CAediting_454559	chr5_179830481_+	SINE	Alu	AluJo
CAediting_454560	chr5_179830482_+	SINE	Alu	AluJo
CAediting_454561	chr5_179830499_+	SINE	Alu	AluJo
CAediting_454562	chr5_179830511_+	SINE	Alu	AluJo
CAediting_454563	chr5_179830633_+	SINE	Alu	AluSg7
CAediting_454564	chr5_179830645_+	SINE	Alu	AluSg7
CAediting_454565	chr5_179830662_+	SINE	Alu	AluSg7
CAediting_454566	chr5_179830675_+	SINE	Alu	AluSg7
CAediting_454567	chr5_179830697_+	SINE	Alu	AluSg7
CAediting_454568	chr5_179830699_+	SINE	Alu	AluSg7
CAediting_454569	chr5_179830703_+	SINE	Alu	AluSg7
CAediting_454570	chr5_179830818_+	SINE	Alu	AluSg7
CAediting_454571	chr5_179830918_+	SINE	Alu	AluJo
CAediting_454572	chr5_179830937_+	SINE	Alu	AluJo
CAediting_454573	chr5_179830964_+	SINE	Alu	AluJo
CAediting_454574	chr5_179830970_+	SINE	Alu	AluJo
CAediting_454575	chr5_179830976_+	SINE	Alu	AluJo
CAediting_454576	chr5_179831379_+	LINE	L1	HAL1
CAediting_454577	chr5_179831406_+	SINE	Alu	AluSx
CAediting_454578	chr5_179831407_+	SINE	Alu	AluSx
CAediting_454579	chr5_179831412_+	SINE	Alu	AluSx
CAediting_454580	chr5_179831460_+	SINE	Alu	AluSx
CAediting_454581	chr5_179831497_+	SINE	Alu	AluSx
CAediting_454582	chr5_179831577_+	SINE	Alu	AluSx
CAediting_454583	chr5_179831582_+	SINE	Alu	AluSx
CAediting_454584	chr5_179831583_+	SINE	Alu	AluSx
CAediting_454585	chr5_179831612_+	SINE	Alu	AluSx
CAediting_454586	chr5_179831644_+	SINE	Alu	AluSx
CAediting_454587	chr5_179831646_+	SINE	Alu	AluSx
CAediting_454588	chr5_179831648_+	SINE	Alu	AluSx
CAediting_454589	chr5_179831675_+	SINE	Alu	AluSx
CAediting_454590	chr5_179831858_+	SINE	Alu	AluSc8
CAediting_454591	chr5_179831883_+	SINE	Alu	AluSc8
CAediting_454592	chr5_179831884_+	SINE	Alu	AluSc8
CAediting_454593	chr5_179831888_+	SINE	Alu	AluSc8
CAediting_454594	chr5_179831913_+	SINE	Alu	AluSc8
CAediting_454595	chr5_179831923_+	SINE	Alu	AluSc8
CAediting_454596	chr5_179831925_+	SINE	Alu	AluSc8
CAediting_454597	chr5_179831965_+	SINE	Alu	AluSc8
CAediting_454598	chr5_179831968_+	SINE	Alu	AluSc8
CAediting_454599	chr5_179831987_+	SINE	Alu	AluSc8
CAediting_454600	chr5_179831990_+	SINE	Alu	AluSc8
CAediting_454601	chr5_179832045_+	SINE	Alu	AluSc8
CAediting_454602	chr5_179832057_+	SINE	Alu	AluSc8

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RNA A-to-I editing events in the alternative splicing sites for SQSTM1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000161011.18.SQSTM1.

Correlation between RNA A-to-I editing and PSI for ENSG00000161011.18.SQSTM1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SQSTM1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SQSTM1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SQSTM1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000161011.18	ENST00000389805	hsa-miR-605-3p	179837904	179837910	7mer-m8	179837890	179837911	140	-13.96
CAediting_980496	chr14_31014685_-	ENSG00000161011.18	ENST00000389805	hsa-miR-624-3p	179837338	179837344	7mer-m8	179837325	179837345	143	-13.45
CAediting_1229413	chr17_67471544_+	ENSG00000161011.18	ENST00000389805	hsa-miR-548aa	179837105	179837112	8mer-1a	179837088	179837112	159	-14.86
CAediting_1229415	chr17_67471547_+	ENSG00000161011.18	ENST00000389805	hsa-miR-548aa	179836910	179836916	7mer-m8	179836893	179836917	140	-8.86
CAediting_524911	chr7_5495852_-	ENSG00000161011.18	ENST00000389805	hsa-miR-589-3p	179837615	179837621	7mer-m8	179837599	179837622	154	-18.21
CAediting_1229413	chr17_67471544_+	ENSG00000161011.18	ENST00000510187	hsa-miR-548aa	179837105	179837112	8mer-1a	179837088	179837112	159	-14.86
CAediting_1229415	chr17_67471547_+	ENSG00000161011.18	ENST00000510187	hsa-miR-548aa	179836910	179836916	7mer-m8	179836893	179836917	140	-8.86
CAediting_1229413	chr17_67471544_+	ENSG00000161011.18	ENST00000360718	hsa-miR-548aa	179837105	179837112	8mer-1a	179837088	179837112	159	-14.86
CAediting_1229415	chr17_67471547_+	ENSG00000161011.18	ENST00000360718	hsa-miR-548aa	179836910	179836916	7mer-m8	179836893	179836917	140	-8.86

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000161011.18	ENST00000389805	hsa-miR-605-3p	179838057	179838063	7mer-m8	179838042	179838064	154	-10.8
CAediting_748296	chr10_51299626_+	ENSG00000161011.18	ENST00000389805	hsa-miR-605-3p	179836688	179836694	7mer-m8	179836676	179836695	146	-16.34

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SQSTM1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000506690.1	processed_transcript
ENST00000512234.1	processed_transcript

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_454364	ENST00000506690.1	chr5_179807716_+	-986.10	-984.30	-1001.60
CAediting_454365	ENST00000506690.1	chr5_179807757_+	-984.30	-984.30	-1001.60
CAediting_454366	ENST00000506690.1	chr5_179807792_+	-985.50	-984.30	-1001.60
CAediting_454367	ENST00000506690.1	chr5_179807855_+	-990.30	-984.30	-1001.60
CAediting_454368	ENST00000506690.1	chr5_179807862_+	-983.60	-984.30	-1001.60
CAediting_454369	ENST00000506690.1	chr5_179807912_+	-984.30	-984.30	-1001.60
CAediting_454370	ENST00000506690.1	chr5_179807913_+	-986.70	-984.30	-1001.60
CAediting_454438	ENST00000506690.1	chr5_179813546_+	-983.40	-984.30	-1001.60
CAediting_454439	ENST00000506690.1	chr5_179813552_+	-985.80	-984.30	-1001.60
CAediting_454440	ENST00000506690.1	chr5_179813554_+	-983.70	-984.30	-1001.60
CAediting_454441	ENST00000506690.1	chr5_179813557_+	-983.60	-984.30	-1001.60
CAediting_454442	ENST00000506690.1	chr5_179813571_+	-990.30	-984.30	-1001.60
CAediting_454437	ENST00000512234.1	chr5_179812066_+	-637.20	-637.30	-641.20
CAediting_454438	ENST00000512234.1	chr5_179813546_+	-636.40	-637.30	-641.20
CAediting_454439	ENST00000512234.1	chr5_179813552_+	-638.80	-637.30	-641.20
CAediting_454440	ENST00000512234.1	chr5_179813554_+	-636.70	-637.30	-641.20
CAediting_454441	ENST00000512234.1	chr5_179813557_+	-636.30	-637.30	-641.20
CAediting_454442	ENST00000512234.1	chr5_179813571_+	-643.50	-637.30	-641.20
CAediting_454443	ENST00000512234.1	chr5_179813623_+	-637.30	-637.30	-641.20
CAediting_454444	ENST00000512234.1	chr5_179813627_+	-636.90	-637.30	-641.20
CAediting_454445	ENST00000512234.1	chr5_179813635_+	-636.60	-637.30	-641.20

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Relation with ADAR for SQSTM1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_454446	chr5_179813645_+	.	.	.	.	0.0292929789515883	0.231157861255073
ESCA	CAediting_454542	chr5_179829983_+	.	.	0.0243751865952179	0.306112389552109	.	.

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Relation with cancer stages for SQSTM1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for SQSTM1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SQSTM1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SQSTM1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
SQSTM1	C4085252	PAGET DISEASE OF BONE 3	9	GENOMICS_ENGLAND;UNIPROT
SQSTM1	C0002736	Amyotrophic Lateral Sclerosis	5	CTD_human;ORPHANET
SQSTM1	C4225326	FRONTOTEMPORAL DEMENTIA AND/OR AMYOTROPHIC LATERAL SCLEROSIS 3	4	CTD_human;UNIPROT
SQSTM1	C0029463	Osteosarcoma	2	GENOMICS_ENGLAND
SQSTM1	C0221054	Welander Distal Myopathy	1	ORPHANET
SQSTM1	C0242383	Age related macular degeneration	1	CTD_human
SQSTM1	C0393554	Amyotrophic Lateral Sclerosis With Dementia	1	CTD_human
SQSTM1	C0543859	Amyotrophic Lateral Sclerosis, Guam Form	1	CTD_human
SQSTM1	C1853926	NONAKA MYOPATHY	1	CTD_human;GENOMICS_ENGLAND
SQSTM1	C2931290	Welander distal myopathy, Swedish type	1	ORPHANET
SQSTM1	C3888102	Frontotemporal Dementia With Motor Neuron Disease	1	ORPHANET
SQSTM1	C4011788	Behavioral variant of frontotemporal dementia	1	ORPHANET

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene